proteus  1.5.1
C/C++/Fortran libraries
subsurfaceTransportFunctions.c
Go to the documentation of this file.
1 /* Generated by Cython 0.25.2 */
2 
3 #define PY_SSIZE_T_CLEAN
4 #include "Python.h"
5 #ifndef Py_PYTHON_H
6  #error Python headers needed to compile C extensions, please install development version of Python.
7 #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000)
8  #error Cython requires Python 2.6+ or Python 3.2+.
9 #else
10 #define CYTHON_ABI "0_25_2"
11 #include <stddef.h>
12 #ifndef offsetof
13  #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
14 #endif
15 #if !defined(WIN32) && !defined(MS_WINDOWS)
16  #ifndef __stdcall
17  #define __stdcall
18  #endif
19  #ifndef __cdecl
20  #define __cdecl
21  #endif
22  #ifndef __fastcall
23  #define __fastcall
24  #endif
25 #endif
26 #ifndef DL_IMPORT
27  #define DL_IMPORT(t) t
28 #endif
29 #ifndef DL_EXPORT
30  #define DL_EXPORT(t) t
31 #endif
32 #ifndef HAVE_LONG_LONG
33  #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000)
34  #define HAVE_LONG_LONG
35  #endif
36 #endif
37 #ifndef PY_LONG_LONG
38  #define PY_LONG_LONG LONG_LONG
39 #endif
40 #ifndef Py_HUGE_VAL
41  #define Py_HUGE_VAL HUGE_VAL
42 #endif
43 #ifdef PYPY_VERSION
44  #define CYTHON_COMPILING_IN_PYPY 1
45  #define CYTHON_COMPILING_IN_PYSTON 0
46  #define CYTHON_COMPILING_IN_CPYTHON 0
47  #undef CYTHON_USE_TYPE_SLOTS
48  #define CYTHON_USE_TYPE_SLOTS 0
49  #undef CYTHON_USE_ASYNC_SLOTS
50  #define CYTHON_USE_ASYNC_SLOTS 0
51  #undef CYTHON_USE_PYLIST_INTERNALS
52  #define CYTHON_USE_PYLIST_INTERNALS 0
53  #undef CYTHON_USE_UNICODE_INTERNALS
54  #define CYTHON_USE_UNICODE_INTERNALS 0
55  #undef CYTHON_USE_UNICODE_WRITER
56  #define CYTHON_USE_UNICODE_WRITER 0
57  #undef CYTHON_USE_PYLONG_INTERNALS
58  #define CYTHON_USE_PYLONG_INTERNALS 0
59  #undef CYTHON_AVOID_BORROWED_REFS
60  #define CYTHON_AVOID_BORROWED_REFS 1
61  #undef CYTHON_ASSUME_SAFE_MACROS
62  #define CYTHON_ASSUME_SAFE_MACROS 0
63  #undef CYTHON_UNPACK_METHODS
64  #define CYTHON_UNPACK_METHODS 0
65  #undef CYTHON_FAST_THREAD_STATE
66  #define CYTHON_FAST_THREAD_STATE 0
67  #undef CYTHON_FAST_PYCALL
68  #define CYTHON_FAST_PYCALL 0
69 #elif defined(PYSTON_VERSION)
70  #define CYTHON_COMPILING_IN_PYPY 0
71  #define CYTHON_COMPILING_IN_PYSTON 1
72  #define CYTHON_COMPILING_IN_CPYTHON 0
73  #ifndef CYTHON_USE_TYPE_SLOTS
74  #define CYTHON_USE_TYPE_SLOTS 1
75  #endif
76  #undef CYTHON_USE_ASYNC_SLOTS
77  #define CYTHON_USE_ASYNC_SLOTS 0
78  #undef CYTHON_USE_PYLIST_INTERNALS
79  #define CYTHON_USE_PYLIST_INTERNALS 0
80  #ifndef CYTHON_USE_UNICODE_INTERNALS
81  #define CYTHON_USE_UNICODE_INTERNALS 1
82  #endif
83  #undef CYTHON_USE_UNICODE_WRITER
84  #define CYTHON_USE_UNICODE_WRITER 0
85  #undef CYTHON_USE_PYLONG_INTERNALS
86  #define CYTHON_USE_PYLONG_INTERNALS 0
87  #ifndef CYTHON_AVOID_BORROWED_REFS
88  #define CYTHON_AVOID_BORROWED_REFS 0
89  #endif
90  #ifndef CYTHON_ASSUME_SAFE_MACROS
91  #define CYTHON_ASSUME_SAFE_MACROS 1
92  #endif
93  #ifndef CYTHON_UNPACK_METHODS
94  #define CYTHON_UNPACK_METHODS 1
95  #endif
96  #undef CYTHON_FAST_THREAD_STATE
97  #define CYTHON_FAST_THREAD_STATE 0
98  #undef CYTHON_FAST_PYCALL
99  #define CYTHON_FAST_PYCALL 0
100 #else
101  #define CYTHON_COMPILING_IN_PYPY 0
102  #define CYTHON_COMPILING_IN_PYSTON 0
103  #define CYTHON_COMPILING_IN_CPYTHON 1
104  #ifndef CYTHON_USE_TYPE_SLOTS
105  #define CYTHON_USE_TYPE_SLOTS 1
106  #endif
107  #if PY_MAJOR_VERSION < 3
108  #undef CYTHON_USE_ASYNC_SLOTS
109  #define CYTHON_USE_ASYNC_SLOTS 0
110  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
111  #define CYTHON_USE_ASYNC_SLOTS 1
112  #endif
113  #if PY_VERSION_HEX < 0x02070000
114  #undef CYTHON_USE_PYLONG_INTERNALS
115  #define CYTHON_USE_PYLONG_INTERNALS 0
116  #elif !defined(CYTHON_USE_PYLONG_INTERNALS)
117  #define CYTHON_USE_PYLONG_INTERNALS 1
118  #endif
119  #ifndef CYTHON_USE_PYLIST_INTERNALS
120  #define CYTHON_USE_PYLIST_INTERNALS 1
121  #endif
122  #ifndef CYTHON_USE_UNICODE_INTERNALS
123  #define CYTHON_USE_UNICODE_INTERNALS 1
124  #endif
125  #if PY_VERSION_HEX < 0x030300F0
126  #undef CYTHON_USE_UNICODE_WRITER
127  #define CYTHON_USE_UNICODE_WRITER 0
128  #elif !defined(CYTHON_USE_UNICODE_WRITER)
129  #define CYTHON_USE_UNICODE_WRITER 1
130  #endif
131  #ifndef CYTHON_AVOID_BORROWED_REFS
132  #define CYTHON_AVOID_BORROWED_REFS 0
133  #endif
134  #ifndef CYTHON_ASSUME_SAFE_MACROS
135  #define CYTHON_ASSUME_SAFE_MACROS 1
136  #endif
137  #ifndef CYTHON_UNPACK_METHODS
138  #define CYTHON_UNPACK_METHODS 1
139  #endif
140  #ifndef CYTHON_FAST_THREAD_STATE
141  #define CYTHON_FAST_THREAD_STATE 1
142  #endif
143  #ifndef CYTHON_FAST_PYCALL
144  #define CYTHON_FAST_PYCALL 1
145  #endif
146 #endif
147 #if !defined(CYTHON_FAST_PYCCALL)
148 #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
149 #endif
150 #if CYTHON_USE_PYLONG_INTERNALS
151  #include "longintrepr.h"
152  #undef SHIFT
153  #undef BASE
154  #undef MASK
155 #endif
156 #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
157  #define Py_OptimizeFlag 0
158 #endif
159 #define __PYX_BUILD_PY_SSIZE_T "n"
160 #define CYTHON_FORMAT_SSIZE_T "z"
161 #if PY_MAJOR_VERSION < 3
162  #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
163  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
164  PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
165  #define __Pyx_DefaultClassType PyClass_Type
166 #else
167  #define __Pyx_BUILTIN_MODULE_NAME "builtins"
168  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
169  PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
170  #define __Pyx_DefaultClassType PyType_Type
171 #endif
172 #ifndef Py_TPFLAGS_CHECKTYPES
173  #define Py_TPFLAGS_CHECKTYPES 0
174 #endif
175 #ifndef Py_TPFLAGS_HAVE_INDEX
176  #define Py_TPFLAGS_HAVE_INDEX 0
177 #endif
178 #ifndef Py_TPFLAGS_HAVE_NEWBUFFER
179  #define Py_TPFLAGS_HAVE_NEWBUFFER 0
180 #endif
181 #ifndef Py_TPFLAGS_HAVE_FINALIZE
182  #define Py_TPFLAGS_HAVE_FINALIZE 0
183 #endif
184 #ifndef METH_FASTCALL
185  #define METH_FASTCALL 0x80
186  typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args,
187  Py_ssize_t nargs, PyObject *kwnames);
188 #else
189  #define __Pyx_PyCFunctionFast _PyCFunctionFast
190 #endif
191 #if CYTHON_FAST_PYCCALL
192 #define __Pyx_PyFastCFunction_Check(func)\
193  ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST)))))
194 #else
195 #define __Pyx_PyFastCFunction_Check(func) 0
196 #endif
197 #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
198  #define CYTHON_PEP393_ENABLED 1
199  #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\
200  0 : _PyUnicode_Ready((PyObject *)(op)))
201  #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
202  #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
203  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u)
204  #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u)
205  #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u)
206  #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i)
207  #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch)
208  #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
209 #else
210  #define CYTHON_PEP393_ENABLED 0
211  #define PyUnicode_1BYTE_KIND 1
212  #define PyUnicode_2BYTE_KIND 2
213  #define PyUnicode_4BYTE_KIND 4
214  #define __Pyx_PyUnicode_READY(op) (0)
215  #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
216  #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
217  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
218  #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE))
219  #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u))
220  #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
221  #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
222  #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u))
223 #endif
224 #if CYTHON_COMPILING_IN_PYPY
225  #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b)
226  #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b)
227 #else
228  #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b)
229  #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
230  PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
231 #endif
232 #if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
233  #define PyUnicode_Contains(u, s) PySequence_Contains(u, s)
234 #endif
235 #if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
236  #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type)
237 #endif
238 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
239  #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt)
240 #endif
241 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
242  #define PyObject_Malloc(s) PyMem_Malloc(s)
243  #define PyObject_Free(p) PyMem_Free(p)
244  #define PyObject_Realloc(p) PyMem_Realloc(p)
245 #endif
246 #if CYTHON_COMPILING_IN_PYSTON
247  #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co)
248  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
249 #else
250  #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0)
251  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno)
252 #endif
253 #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
254 #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
255 #if PY_MAJOR_VERSION >= 3
256  #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b)
257 #else
258  #define __Pyx_PyString_Format(a, b) PyString_Format(a, b)
259 #endif
260 #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
261  #define PyObject_ASCII(o) PyObject_Repr(o)
262 #endif
263 #if PY_MAJOR_VERSION >= 3
264  #define PyBaseString_Type PyUnicode_Type
265  #define PyStringObject PyUnicodeObject
266  #define PyString_Type PyUnicode_Type
267  #define PyString_Check PyUnicode_Check
268  #define PyString_CheckExact PyUnicode_CheckExact
269 #endif
270 #if PY_MAJOR_VERSION >= 3
271  #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
272  #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
273 #else
274  #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
275  #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
276 #endif
277 #ifndef PySet_CheckExact
278  #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
279 #endif
280 #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
281 #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception)
282 #if PY_MAJOR_VERSION >= 3
283  #define PyIntObject PyLongObject
284  #define PyInt_Type PyLong_Type
285  #define PyInt_Check(op) PyLong_Check(op)
286  #define PyInt_CheckExact(op) PyLong_CheckExact(op)
287  #define PyInt_FromString PyLong_FromString
288  #define PyInt_FromUnicode PyLong_FromUnicode
289  #define PyInt_FromLong PyLong_FromLong
290  #define PyInt_FromSize_t PyLong_FromSize_t
291  #define PyInt_FromSsize_t PyLong_FromSsize_t
292  #define PyInt_AsLong PyLong_AsLong
293  #define PyInt_AS_LONG PyLong_AS_LONG
294  #define PyInt_AsSsize_t PyLong_AsSsize_t
295  #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask
296  #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
297  #define PyNumber_Int PyNumber_Long
298 #endif
299 #if PY_MAJOR_VERSION >= 3
300  #define PyBoolObject PyLongObject
301 #endif
302 #if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
303  #ifndef PyUnicode_InternFromString
304  #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
305  #endif
306 #endif
307 #if PY_VERSION_HEX < 0x030200A4
308  typedef long Py_hash_t;
309  #define __Pyx_PyInt_FromHash_t PyInt_FromLong
310  #define __Pyx_PyInt_AsHash_t PyInt_AsLong
311 #else
312  #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
313  #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t
314 #endif
315 #if PY_MAJOR_VERSION >= 3
316  #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func))
317 #else
318  #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
319 #endif
320 #if CYTHON_USE_ASYNC_SLOTS
321  #if PY_VERSION_HEX >= 0x030500B1
322  #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
323  #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
324  #else
325  typedef struct {
326  unaryfunc am_await;
327  unaryfunc am_aiter;
328  unaryfunc am_anext;
329  } __Pyx_PyAsyncMethodsStruct;
330  #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
331  #endif
332 #else
333  #define __Pyx_PyType_AsAsync(obj) NULL
334 #endif
335 #ifndef CYTHON_RESTRICT
336  #if defined(__GNUC__)
337  #define CYTHON_RESTRICT __restrict__
338  #elif defined(_MSC_VER) && _MSC_VER >= 1400
339  #define CYTHON_RESTRICT __restrict
340  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
341  #define CYTHON_RESTRICT restrict
342  #else
343  #define CYTHON_RESTRICT
344  #endif
345 #endif
346 #ifndef CYTHON_UNUSED
347 # if defined(__GNUC__)
348 # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
349 # define CYTHON_UNUSED __attribute__ ((__unused__))
350 # else
351 # define CYTHON_UNUSED
352 # endif
353 # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
354 # define CYTHON_UNUSED __attribute__ ((__unused__))
355 # else
356 # define CYTHON_UNUSED
357 # endif
358 #endif
359 #ifndef CYTHON_MAYBE_UNUSED_VAR
360 # if defined(__cplusplus)
361  template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { }
362 # else
363 # define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x)
364 # endif
365 #endif
366 #ifndef CYTHON_NCP_UNUSED
367 # if CYTHON_COMPILING_IN_CPYTHON
368 # define CYTHON_NCP_UNUSED
369 # else
370 # define CYTHON_NCP_UNUSED CYTHON_UNUSED
371 # endif
372 #endif
373 #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
374 
375 #ifndef CYTHON_INLINE
376  #if defined(__clang__)
377  #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
378  #elif defined(__GNUC__)
379  #define CYTHON_INLINE __inline__
380  #elif defined(_MSC_VER)
381  #define CYTHON_INLINE __inline
382  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
383  #define CYTHON_INLINE inline
384  #else
385  #define CYTHON_INLINE
386  #endif
387 #endif
388 
389 #if defined(WIN32) || defined(MS_WINDOWS)
390  #define _USE_MATH_DEFINES
391 #endif
392 #include <math.h>
393 #ifdef NAN
394 #define __PYX_NAN() ((float) NAN)
395 #else
396 static CYTHON_INLINE float __PYX_NAN() {
397  float value;
398  memset(&value, 0xFF, sizeof(value));
399  return value;
400 }
401 #endif
402 #if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
403 #define __Pyx_truncl trunc
404 #else
405 #define __Pyx_truncl truncl
406 #endif
407 
408 
409 #define __PYX_ERR(f_index, lineno, Ln_error) \
410 { \
411  __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \
412 }
413 
414 #if PY_MAJOR_VERSION >= 3
415  #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
416  #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
417 #else
418  #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
419  #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
420 #endif
421 
422 #ifndef __PYX_EXTERN_C
423  #ifdef __cplusplus
424  #define __PYX_EXTERN_C extern "C"
425  #else
426  #define __PYX_EXTERN_C extern
427  #endif
428 #endif
429 
430 #define __PYX_HAVE__subsurfaceTransportFunctions
431 #define __PYX_HAVE_API__subsurfaceTransportFunctions
432 #include <string.h>
433 #include <stdio.h>
434 #include <stdlib.h>
435 #include "numpy/arrayobject.h"
436 #include "numpy/ufuncobject.h"
437 #include "math.h"
438 #ifdef _OPENMP
439 #include <omp.h>
440 #endif /* _OPENMP */
441 
442 #ifdef PYREX_WITHOUT_ASSERTIONS
443 #define CYTHON_WITHOUT_ASSERTIONS
444 #endif
445 
446 typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
447  const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;
448 
449 #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
450 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0
451 #define __PYX_DEFAULT_STRING_ENCODING ""
452 #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
453 #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
454 #define __Pyx_uchar_cast(c) ((unsigned char)c)
455 #define __Pyx_long_cast(x) ((long)x)
456 #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\
457  (sizeof(type) < sizeof(Py_ssize_t)) ||\
458  (sizeof(type) > sizeof(Py_ssize_t) &&\
459  likely(v < (type)PY_SSIZE_T_MAX ||\
460  v == (type)PY_SSIZE_T_MAX) &&\
461  (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
462  v == (type)PY_SSIZE_T_MIN))) ||\
463  (sizeof(type) == sizeof(Py_ssize_t) &&\
464  (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
465  v == (type)PY_SSIZE_T_MAX))) )
466 #if defined (__cplusplus) && __cplusplus >= 201103L
467  #include <cstdlib>
468  #define __Pyx_sst_abs(value) std::abs(value)
469 #elif SIZEOF_INT >= SIZEOF_SIZE_T
470  #define __Pyx_sst_abs(value) abs(value)
471 #elif SIZEOF_LONG >= SIZEOF_SIZE_T
472  #define __Pyx_sst_abs(value) labs(value)
473 #elif defined (_MSC_VER) && defined (_M_X64)
474  #define __Pyx_sst_abs(value) _abs64(value)
475 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
476  #define __Pyx_sst_abs(value) llabs(value)
477 #elif defined (__GNUC__)
478  #define __Pyx_sst_abs(value) __builtin_llabs(value)
479 #else
480  #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
481 #endif
482 static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*);
483 static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
484 #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
485 #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
486 #define __Pyx_PyBytes_FromString PyBytes_FromString
487 #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
488 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
489 #if PY_MAJOR_VERSION < 3
490  #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString
491  #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
492 #else
493  #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString
494  #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
495 #endif
496 #define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s))
497 #define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s))
498 #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s)
499 #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s)
500 #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s)
501 #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s)
502 #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
503 #if PY_MAJOR_VERSION < 3
504 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
505 {
506  const Py_UNICODE *u_end = u;
507  while (*u_end++) ;
508  return (size_t)(u_end - u - 1);
509 }
510 #else
511 #define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen
512 #endif
513 #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
514 #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
515 #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
516 #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
517 #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
518 #define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False))
519 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
520 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
521 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
522 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
523 #if CYTHON_ASSUME_SAFE_MACROS
524 #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
525 #else
526 #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
527 #endif
528 #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
529 #if PY_MAJOR_VERSION >= 3
530 #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
531 #else
532 #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
533 #endif
534 #define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
535 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
536 static int __Pyx_sys_getdefaultencoding_not_ascii;
537 static int __Pyx_init_sys_getdefaultencoding_params(void) {
538  PyObject* sys;
539  PyObject* default_encoding = NULL;
540  PyObject* ascii_chars_u = NULL;
541  PyObject* ascii_chars_b = NULL;
542  const char* default_encoding_c;
543  sys = PyImport_ImportModule("sys");
544  if (!sys) goto bad;
545  default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
546  Py_DECREF(sys);
547  if (!default_encoding) goto bad;
548  default_encoding_c = PyBytes_AsString(default_encoding);
549  if (!default_encoding_c) goto bad;
550  if (strcmp(default_encoding_c, "ascii") == 0) {
551  __Pyx_sys_getdefaultencoding_not_ascii = 0;
552  } else {
553  char ascii_chars[128];
554  int c;
555  for (c = 0; c < 128; c++) {
556  ascii_chars[c] = c;
557  }
558  __Pyx_sys_getdefaultencoding_not_ascii = 1;
559  ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
560  if (!ascii_chars_u) goto bad;
561  ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
562  if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
563  PyErr_Format(
564  PyExc_ValueError,
565  "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
566  default_encoding_c);
567  goto bad;
568  }
569  Py_DECREF(ascii_chars_u);
570  Py_DECREF(ascii_chars_b);
571  }
572  Py_DECREF(default_encoding);
573  return 0;
574 bad:
575  Py_XDECREF(default_encoding);
576  Py_XDECREF(ascii_chars_u);
577  Py_XDECREF(ascii_chars_b);
578  return -1;
579 }
580 #endif
581 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
582 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
583 #else
584 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
585 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
586 static char* __PYX_DEFAULT_STRING_ENCODING;
587 static int __Pyx_init_sys_getdefaultencoding_params(void) {
588  PyObject* sys;
589  PyObject* default_encoding = NULL;
590  char* default_encoding_c;
591  sys = PyImport_ImportModule("sys");
592  if (!sys) goto bad;
593  default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
594  Py_DECREF(sys);
595  if (!default_encoding) goto bad;
596  default_encoding_c = PyBytes_AsString(default_encoding);
597  if (!default_encoding_c) goto bad;
598  __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c));
599  if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
600  strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
601  Py_DECREF(default_encoding);
602  return 0;
603 bad:
604  Py_XDECREF(default_encoding);
605  return -1;
606 }
607 #endif
608 #endif
609 
610 
611 /* Test for GCC > 2.95 */
612 #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
613  #define likely(x) __builtin_expect(!!(x), 1)
614  #define unlikely(x) __builtin_expect(!!(x), 0)
615 #else /* !__GNUC__ or GCC < 2.95 */
616  #define likely(x) (x)
617  #define unlikely(x) (x)
618 #endif /* __GNUC__ */
619 
620 static PyObject *__pyx_m;
621 static PyObject *__pyx_d;
622 static PyObject *__pyx_b;
623 static PyObject *__pyx_empty_tuple;
624 static PyObject *__pyx_empty_bytes;
625 static PyObject *__pyx_empty_unicode;
626 static int __pyx_lineno;
627 static int __pyx_clineno = 0;
628 static const char * __pyx_cfilenm= __FILE__;
629 static const char *__pyx_filename;
630 
631 /* Header.proto */
632 #if !defined(CYTHON_CCOMPLEX)
633  #if defined(__cplusplus)
634  #define CYTHON_CCOMPLEX 1
635  #elif defined(_Complex_I)
636  #define CYTHON_CCOMPLEX 1
637  #else
638  #define CYTHON_CCOMPLEX 0
639  #endif
640 #endif
641 #if CYTHON_CCOMPLEX
642  #ifdef __cplusplus
643  #include <complex>
644  #else
645  #include <complex.h>
646  #endif
647 #endif
648 #if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
649  #undef _Complex_I
650  #define _Complex_I 1.0fj
651 #endif
652 
653 
654 static const char *__pyx_f[] = {
655  "proteus/subsurfaceTransportFunctions.pyx",
656  "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd",
657  "linux2/lib/python2.7/site-packages/Cython/Includes/cpython/type.pxd",
658 };
659 /* BufferFormatStructs.proto */
660 #define IS_UNSIGNED(type) (((type) -1) > 0)
661 struct __Pyx_StructField_;
662 #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0)
663 typedef struct {
664  const char* name;
665  struct __Pyx_StructField_* fields;
666  size_t size;
667  size_t arraysize[8];
668  int ndim;
669  char typegroup;
670  char is_unsigned;
671  int flags;
672 } __Pyx_TypeInfo;
673 typedef struct __Pyx_StructField_ {
674  __Pyx_TypeInfo* type;
675  const char* name;
676  size_t offset;
677 } __Pyx_StructField;
678 typedef struct {
679  __Pyx_StructField* field;
680  size_t parent_offset;
681 } __Pyx_BufFmt_StackElem;
682 typedef struct {
683  __Pyx_StructField root;
684  __Pyx_BufFmt_StackElem* head;
685  size_t fmt_offset;
686  size_t new_count, enc_count;
687  size_t struct_alignment;
688  int is_complex;
689  char enc_type;
690  char new_packmode;
691  char enc_packmode;
692  char is_valid_array;
693 } __Pyx_BufFmt_Context;
694 
695 
696 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":725
697  * # in Cython to enable them only on the right systems.
698  *
699  * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
700  * ctypedef npy_int16 int16_t
701  * ctypedef npy_int32 int32_t
702  */
703 typedef npy_int8 __pyx_t_5numpy_int8_t;
704 
705 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":726
706  *
707  * ctypedef npy_int8 int8_t
708  * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
709  * ctypedef npy_int32 int32_t
710  * ctypedef npy_int64 int64_t
711  */
712 typedef npy_int16 __pyx_t_5numpy_int16_t;
713 
714 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":727
715  * ctypedef npy_int8 int8_t
716  * ctypedef npy_int16 int16_t
717  * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
718  * ctypedef npy_int64 int64_t
719  * #ctypedef npy_int96 int96_t
720  */
721 typedef npy_int32 __pyx_t_5numpy_int32_t;
722 
723 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":728
724  * ctypedef npy_int16 int16_t
725  * ctypedef npy_int32 int32_t
726  * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
727  * #ctypedef npy_int96 int96_t
728  * #ctypedef npy_int128 int128_t
729  */
730 typedef npy_int64 __pyx_t_5numpy_int64_t;
731 
732 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":732
733  * #ctypedef npy_int128 int128_t
734  *
735  * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
736  * ctypedef npy_uint16 uint16_t
737  * ctypedef npy_uint32 uint32_t
738  */
739 typedef npy_uint8 __pyx_t_5numpy_uint8_t;
740 
741 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":733
742  *
743  * ctypedef npy_uint8 uint8_t
744  * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
745  * ctypedef npy_uint32 uint32_t
746  * ctypedef npy_uint64 uint64_t
747  */
748 typedef npy_uint16 __pyx_t_5numpy_uint16_t;
749 
750 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":734
751  * ctypedef npy_uint8 uint8_t
752  * ctypedef npy_uint16 uint16_t
753  * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
754  * ctypedef npy_uint64 uint64_t
755  * #ctypedef npy_uint96 uint96_t
756  */
757 typedef npy_uint32 __pyx_t_5numpy_uint32_t;
758 
759 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":735
760  * ctypedef npy_uint16 uint16_t
761  * ctypedef npy_uint32 uint32_t
762  * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
763  * #ctypedef npy_uint96 uint96_t
764  * #ctypedef npy_uint128 uint128_t
765  */
766 typedef npy_uint64 __pyx_t_5numpy_uint64_t;
767 
768 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":739
769  * #ctypedef npy_uint128 uint128_t
770  *
771  * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
772  * ctypedef npy_float64 float64_t
773  * #ctypedef npy_float80 float80_t
774  */
775 typedef npy_float32 __pyx_t_5numpy_float32_t;
776 
777 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":740
778  *
779  * ctypedef npy_float32 float32_t
780  * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
781  * #ctypedef npy_float80 float80_t
782  * #ctypedef npy_float128 float128_t
783  */
784 typedef npy_float64 __pyx_t_5numpy_float64_t;
785 
786 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":749
787  * # The int types are mapped a bit surprising --
788  * # numpy.int corresponds to 'l' and numpy.long to 'q'
789  * ctypedef npy_long int_t # <<<<<<<<<<<<<<
790  * ctypedef npy_longlong long_t
791  * ctypedef npy_longlong longlong_t
792  */
793 typedef npy_long __pyx_t_5numpy_int_t;
794 
795 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":750
796  * # numpy.int corresponds to 'l' and numpy.long to 'q'
797  * ctypedef npy_long int_t
798  * ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
799  * ctypedef npy_longlong longlong_t
800  *
801  */
802 typedef npy_longlong __pyx_t_5numpy_long_t;
803 
804 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":751
805  * ctypedef npy_long int_t
806  * ctypedef npy_longlong long_t
807  * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
808  *
809  * ctypedef npy_ulong uint_t
810  */
811 typedef npy_longlong __pyx_t_5numpy_longlong_t;
812 
813 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":753
814  * ctypedef npy_longlong longlong_t
815  *
816  * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
817  * ctypedef npy_ulonglong ulong_t
818  * ctypedef npy_ulonglong ulonglong_t
819  */
820 typedef npy_ulong __pyx_t_5numpy_uint_t;
821 
822 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":754
823  *
824  * ctypedef npy_ulong uint_t
825  * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
826  * ctypedef npy_ulonglong ulonglong_t
827  *
828  */
829 typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
830 
831 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":755
832  * ctypedef npy_ulong uint_t
833  * ctypedef npy_ulonglong ulong_t
834  * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
835  *
836  * ctypedef npy_intp intp_t
837  */
838 typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
839 
840 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":757
841  * ctypedef npy_ulonglong ulonglong_t
842  *
843  * ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
844  * ctypedef npy_uintp uintp_t
845  *
846  */
847 typedef npy_intp __pyx_t_5numpy_intp_t;
848 
849 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":758
850  *
851  * ctypedef npy_intp intp_t
852  * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
853  *
854  * ctypedef npy_double float_t
855  */
856 typedef npy_uintp __pyx_t_5numpy_uintp_t;
857 
858 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":760
859  * ctypedef npy_uintp uintp_t
860  *
861  * ctypedef npy_double float_t # <<<<<<<<<<<<<<
862  * ctypedef npy_double double_t
863  * ctypedef npy_longdouble longdouble_t
864  */
865 typedef npy_double __pyx_t_5numpy_float_t;
866 
867 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":761
868  *
869  * ctypedef npy_double float_t
870  * ctypedef npy_double double_t # <<<<<<<<<<<<<<
871  * ctypedef npy_longdouble longdouble_t
872  *
873  */
874 typedef npy_double __pyx_t_5numpy_double_t;
875 
876 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":762
877  * ctypedef npy_double float_t
878  * ctypedef npy_double double_t
879  * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
880  *
881  * ctypedef npy_cfloat cfloat_t
882  */
883 typedef npy_longdouble __pyx_t_5numpy_longdouble_t;
884 
885 /* "subsurfaceTransportFunctions.pyx":14
886  * cdef inline double double_min(double a, double b): return a if a <= b else b
887  *
888  * ctypedef numpy.double_t DTYPE_t # <<<<<<<<<<<<<<
889  * #numpy.intc_t not in cython's numpy.pxd
890  * ctypedef int ITYPE_t
891  */
892 typedef __pyx_t_5numpy_double_t __pyx_t_28subsurfaceTransportFunctions_DTYPE_t;
893 
894 /* "subsurfaceTransportFunctions.pyx":16
895  * ctypedef numpy.double_t DTYPE_t
896  * #numpy.intc_t not in cython's numpy.pxd
897  * ctypedef int ITYPE_t # <<<<<<<<<<<<<<
898  *
899  * def setExteriorElementBoundaryTypes(int nExteriorElementBoundaries_global,
900  */
901 typedef int __pyx_t_28subsurfaceTransportFunctions_ITYPE_t;
902 /* Declarations.proto */
903 #if CYTHON_CCOMPLEX
904  #ifdef __cplusplus
905  typedef ::std::complex< float > __pyx_t_float_complex;
906  #else
907  typedef float _Complex __pyx_t_float_complex;
908  #endif
909 #else
910  typedef struct { float real, imag; } __pyx_t_float_complex;
911 #endif
912 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float);
913 
914 /* Declarations.proto */
915 #if CYTHON_CCOMPLEX
916  #ifdef __cplusplus
917  typedef ::std::complex< double > __pyx_t_double_complex;
918  #else
919  typedef double _Complex __pyx_t_double_complex;
920  #endif
921 #else
922  typedef struct { double real, imag; } __pyx_t_double_complex;
923 #endif
924 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double);
925 
926 
927 /*--- Type declarations ---*/
928 
929 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":764
930  * ctypedef npy_longdouble longdouble_t
931  *
932  * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
933  * ctypedef npy_cdouble cdouble_t
934  * ctypedef npy_clongdouble clongdouble_t
935  */
936 typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
937 
938 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":765
939  *
940  * ctypedef npy_cfloat cfloat_t
941  * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
942  * ctypedef npy_clongdouble clongdouble_t
943  *
944  */
945 typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
946 
947 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":766
948  * ctypedef npy_cfloat cfloat_t
949  * ctypedef npy_cdouble cdouble_t
950  * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
951  *
952  * ctypedef npy_cdouble complex_t
953  */
954 typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
955 
956 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":768
957  * ctypedef npy_clongdouble clongdouble_t
958  *
959  * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
960  *
961  * cdef inline object PyArray_MultiIterNew1(a):
962  */
963 typedef npy_cdouble __pyx_t_5numpy_complex_t;
964 
965 /* --- Runtime support code (head) --- */
966 /* Refnanny.proto */
967 #ifndef CYTHON_REFNANNY
968  #define CYTHON_REFNANNY 0
969 #endif
970 #if CYTHON_REFNANNY
971  typedef struct {
972  void (*INCREF)(void*, PyObject*, int);
973  void (*DECREF)(void*, PyObject*, int);
974  void (*GOTREF)(void*, PyObject*, int);
975  void (*GIVEREF)(void*, PyObject*, int);
976  void* (*SetupContext)(const char*, int, const char*);
977  void (*FinishContext)(void**);
978  } __Pyx_RefNannyAPIStruct;
979  static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL;
980  static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname);
981  #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL;
982 #ifdef WITH_THREAD
983  #define __Pyx_RefNannySetupContext(name, acquire_gil)\
984  if (acquire_gil) {\
985  PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\
986  __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\
987  PyGILState_Release(__pyx_gilstate_save);\
988  } else {\
989  __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\
990  }
991 #else
992  #define __Pyx_RefNannySetupContext(name, acquire_gil)\
993  __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__)
994 #endif
995  #define __Pyx_RefNannyFinishContext()\
996  __Pyx_RefNanny->FinishContext(&__pyx_refnanny)
997  #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
998  #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
999  #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1000  #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1001  #define __Pyx_XINCREF(r) do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0)
1002  #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0)
1003  #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0)
1004  #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0)
1005 #else
1006  #define __Pyx_RefNannyDeclarations
1007  #define __Pyx_RefNannySetupContext(name, acquire_gil)
1008  #define __Pyx_RefNannyFinishContext()
1009  #define __Pyx_INCREF(r) Py_INCREF(r)
1010  #define __Pyx_DECREF(r) Py_DECREF(r)
1011  #define __Pyx_GOTREF(r)
1012  #define __Pyx_GIVEREF(r)
1013  #define __Pyx_XINCREF(r) Py_XINCREF(r)
1014  #define __Pyx_XDECREF(r) Py_XDECREF(r)
1015  #define __Pyx_XGOTREF(r)
1016  #define __Pyx_XGIVEREF(r)
1017 #endif
1018 #define __Pyx_XDECREF_SET(r, v) do {\
1019  PyObject *tmp = (PyObject *) r;\
1020  r = v; __Pyx_XDECREF(tmp);\
1021  } while (0)
1022 #define __Pyx_DECREF_SET(r, v) do {\
1023  PyObject *tmp = (PyObject *) r;\
1024  r = v; __Pyx_DECREF(tmp);\
1025  } while (0)
1026 #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
1027 #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)
1028 
1029 /* PyObjectGetAttrStr.proto */
1030 #if CYTHON_USE_TYPE_SLOTS
1031 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
1032  PyTypeObject* tp = Py_TYPE(obj);
1033  if (likely(tp->tp_getattro))
1034  return tp->tp_getattro(obj, attr_name);
1035 #if PY_MAJOR_VERSION < 3
1036  if (likely(tp->tp_getattr))
1037  return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
1038 #endif
1039  return PyObject_GetAttr(obj, attr_name);
1040 }
1041 #else
1042 #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
1043 #endif
1044 
1045 /* GetBuiltinName.proto */
1046 static PyObject *__Pyx_GetBuiltinName(PyObject *name);
1047 
1048 /* RaiseArgTupleInvalid.proto */
1049 static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
1050  Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);
1051 
1052 /* RaiseDoubleKeywords.proto */
1053 static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);
1054 
1055 /* ParseKeywords.proto */
1056 static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\
1057  PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\
1058  const char* function_name);
1059 
1060 /* ArgTypeTest.proto */
1061 static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
1062  const char *name, int exact);
1063 
1064 /* BufferFormatCheck.proto */
1065 static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj,
1066  __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack);
1067 static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info);
1068 static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts);
1069 static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
1070  __Pyx_BufFmt_StackElem* stack,
1071  __Pyx_TypeInfo* type); // PROTO
1072 
1073 /* BufferIndexError.proto */
1074 static void __Pyx_RaiseBufferIndexError(int axis);
1075 
1076 #define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0)
1077 #define __Pyx_BufPtrStrided2d(type, buf, i0, s0, i1, s1) (type)((char*)buf + i0 * s0 + i1 * s1)
1078 /* PyThreadStateGet.proto */
1079 #if CYTHON_FAST_THREAD_STATE
1080 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
1081 #define __Pyx_PyThreadState_assign __pyx_tstate = PyThreadState_GET();
1082 #else
1083 #define __Pyx_PyThreadState_declare
1084 #define __Pyx_PyThreadState_assign
1085 #endif
1086 
1087 /* PyErrFetchRestore.proto */
1088 #if CYTHON_FAST_THREAD_STATE
1089 #define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb)
1090 #define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb)
1091 #define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb)
1092 #define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb)
1093 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1094 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1095 #else
1096 #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb)
1097 #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb)
1098 #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb)
1099 #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb)
1100 #endif
1101 
1102 /* DictGetItem.proto */
1103 #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
1104 static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) {
1105  PyObject *value;
1106  value = PyDict_GetItemWithError(d, key);
1107  if (unlikely(!value)) {
1108  if (!PyErr_Occurred()) {
1109  PyObject* args = PyTuple_Pack(1, key);
1110  if (likely(args))
1111  PyErr_SetObject(PyExc_KeyError, args);
1112  Py_XDECREF(args);
1113  }
1114  return NULL;
1115  }
1116  Py_INCREF(value);
1117  return value;
1118 }
1119 #else
1120  #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key)
1121 #endif
1122 
1123 #define __Pyx_BufPtrStrided3d(type, buf, i0, s0, i1, s1, i2, s2) (type)((char*)buf + i0 * s0 + i1 * s1 + i2 * s2)
1124 /* PyFloatBinop.proto */
1125 #if !CYTHON_COMPILING_IN_PYPY
1126 static PyObject* __Pyx_PyFloat_AddObjC(PyObject *op1, PyObject *op2, double floatval, int inplace);
1127 #else
1128 #define __Pyx_PyFloat_AddObjC(op1, op2, floatval, inplace)\
1129  (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2))
1130 #endif
1131 
1132 #define __Pyx_BufPtrStrided4d(type, buf, i0, s0, i1, s1, i2, s2, i3, s3) (type)((char*)buf + i0 * s0 + i1 * s1 + i2 * s2 + i3 * s3)
1133 /* PyFunctionFastCall.proto */
1134 #if CYTHON_FAST_PYCALL
1135 #define __Pyx_PyFunction_FastCall(func, args, nargs)\
1136  __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL)
1137 #if 1 || PY_VERSION_HEX < 0x030600B1
1138 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs);
1139 #else
1140 #define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs)
1141 #endif
1142 #endif
1143 
1144 /* PyCFunctionFastCall.proto */
1145 #if CYTHON_FAST_PYCCALL
1146 static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs);
1147 #else
1148 #define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL)
1149 #endif
1150 
1151 /* PyObjectCall.proto */
1152 #if CYTHON_COMPILING_IN_CPYTHON
1153 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
1154 #else
1155 #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
1156 #endif
1157 
1158 /* GetModuleGlobalName.proto */
1159 static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name);
1160 
1161 /* ExtTypeTest.proto */
1162 static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);
1163 
1164 /* GetItemInt.proto */
1165 #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1166  (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1167  __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\
1168  (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\
1169  __Pyx_GetItemInt_Generic(o, to_py_func(i))))
1170 #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1171  (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1172  __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1173  (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
1174 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
1175  int wraparound, int boundscheck);
1176 #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1177  (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1178  __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1179  (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
1180 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
1181  int wraparound, int boundscheck);
1182 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
1183 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
1184  int is_list, int wraparound, int boundscheck);
1185 
1186 /* PyObjectCallMethO.proto */
1187 #if CYTHON_COMPILING_IN_CPYTHON
1188 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
1189 #endif
1190 
1191 /* PyObjectCallOneArg.proto */
1192 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);
1193 
1194 /* pyobject_as_double.proto */
1195 static double __Pyx__PyObject_AsDouble(PyObject* obj);
1196 #if CYTHON_COMPILING_IN_PYPY
1197 #define __Pyx_PyObject_AsDouble(obj)\
1198 (likely(PyFloat_CheckExact(obj)) ? PyFloat_AS_DOUBLE(obj) :\
1199  likely(PyInt_CheckExact(obj)) ?\
1200  PyFloat_AsDouble(obj) : __Pyx__PyObject_AsDouble(obj))
1201 #else
1202 #define __Pyx_PyObject_AsDouble(obj)\
1203 ((likely(PyFloat_CheckExact(obj))) ?\
1204  PyFloat_AS_DOUBLE(obj) : __Pyx__PyObject_AsDouble(obj))
1205 #endif
1206 
1207 /* RaiseException.proto */
1208 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);
1209 
1210 /* RaiseTooManyValuesToUnpack.proto */
1211 static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
1212 
1213 /* RaiseNeedMoreValuesToUnpack.proto */
1214 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
1215 
1216 /* RaiseNoneIterError.proto */
1217 static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);
1218 
1219 /* SaveResetException.proto */
1220 #if CYTHON_FAST_THREAD_STATE
1221 #define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
1222 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1223 #define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
1224 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1225 #else
1226 #define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb)
1227 #define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb)
1228 #endif
1229 
1230 /* PyErrExceptionMatches.proto */
1231 #if CYTHON_FAST_THREAD_STATE
1232 #define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
1233 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
1234 #else
1235 #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err)
1236 #endif
1237 
1238 /* GetException.proto */
1239 #if CYTHON_FAST_THREAD_STATE
1240 #define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb)
1241 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1242 #else
1243 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
1244 #endif
1245 
1246 /* Import.proto */
1247 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);
1248 
1249 /* CodeObjectCache.proto */
1250 typedef struct {
1251  PyCodeObject* code_object;
1252  int code_line;
1253 } __Pyx_CodeObjectCacheEntry;
1254 struct __Pyx_CodeObjectCache {
1255  int count;
1256  int max_count;
1257  __Pyx_CodeObjectCacheEntry* entries;
1258 };
1259 static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
1260 static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
1261 static PyCodeObject *__pyx_find_code_object(int code_line);
1262 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);
1263 
1264 /* AddTraceback.proto */
1265 static void __Pyx_AddTraceback(const char *funcname, int c_line,
1266  int py_line, const char *filename);
1267 
1268 /* BufferStructDeclare.proto */
1269 typedef struct {
1270  Py_ssize_t shape, strides, suboffsets;
1271 } __Pyx_Buf_DimInfo;
1272 typedef struct {
1273  size_t refcount;
1274  Py_buffer pybuffer;
1275 } __Pyx_Buffer;
1276 typedef struct {
1277  __Pyx_Buffer *rcbuffer;
1278  char *data;
1279  __Pyx_Buf_DimInfo diminfo[8];
1280 } __Pyx_LocalBuf_ND;
1281 
1282 #if PY_MAJOR_VERSION < 3
1283  static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags);
1284  static void __Pyx_ReleaseBuffer(Py_buffer *view);
1285 #else
1286  #define __Pyx_GetBuffer PyObject_GetBuffer
1287  #define __Pyx_ReleaseBuffer PyBuffer_Release
1288 #endif
1289 
1290 
1291 /* None.proto */
1292 static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0};
1293 static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1};
1294 
1295 /* CIntToPy.proto */
1296 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
1297 
1298 /* CIntToPy.proto */
1299 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value);
1300 
1301 /* CIntToPy.proto */
1302 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
1303 
1304 /* RealImag.proto */
1305 #if CYTHON_CCOMPLEX
1306  #ifdef __cplusplus
1307  #define __Pyx_CREAL(z) ((z).real())
1308  #define __Pyx_CIMAG(z) ((z).imag())
1309  #else
1310  #define __Pyx_CREAL(z) (__real__(z))
1311  #define __Pyx_CIMAG(z) (__imag__(z))
1312  #endif
1313 #else
1314  #define __Pyx_CREAL(z) ((z).real)
1315  #define __Pyx_CIMAG(z) ((z).imag)
1316 #endif
1317 #if defined(__cplusplus) && CYTHON_CCOMPLEX\
1318  && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103)
1319  #define __Pyx_SET_CREAL(z,x) ((z).real(x))
1320  #define __Pyx_SET_CIMAG(z,y) ((z).imag(y))
1321 #else
1322  #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x)
1323  #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y)
1324 #endif
1325 
1326 /* Arithmetic.proto */
1327 #if CYTHON_CCOMPLEX
1328  #define __Pyx_c_eq_float(a, b) ((a)==(b))
1329  #define __Pyx_c_sum_float(a, b) ((a)+(b))
1330  #define __Pyx_c_diff_float(a, b) ((a)-(b))
1331  #define __Pyx_c_prod_float(a, b) ((a)*(b))
1332  #define __Pyx_c_quot_float(a, b) ((a)/(b))
1333  #define __Pyx_c_neg_float(a) (-(a))
1334  #ifdef __cplusplus
1335  #define __Pyx_c_is_zero_float(z) ((z)==(float)0)
1336  #define __Pyx_c_conj_float(z) (::std::conj(z))
1337  #if 1
1338  #define __Pyx_c_abs_float(z) (::std::abs(z))
1339  #define __Pyx_c_pow_float(a, b) (::std::pow(a, b))
1340  #endif
1341  #else
1342  #define __Pyx_c_is_zero_float(z) ((z)==0)
1343  #define __Pyx_c_conj_float(z) (conjf(z))
1344  #if 1
1345  #define __Pyx_c_abs_float(z) (cabsf(z))
1346  #define __Pyx_c_pow_float(a, b) (cpowf(a, b))
1347  #endif
1348  #endif
1349 #else
1350  static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex);
1351  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex);
1352  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex);
1353  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex);
1354  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex);
1355  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex);
1356  static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex);
1357  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex);
1358  #if 1
1359  static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex);
1360  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex);
1361  #endif
1362 #endif
1363 
1364 /* Arithmetic.proto */
1365 #if CYTHON_CCOMPLEX
1366  #define __Pyx_c_eq_double(a, b) ((a)==(b))
1367  #define __Pyx_c_sum_double(a, b) ((a)+(b))
1368  #define __Pyx_c_diff_double(a, b) ((a)-(b))
1369  #define __Pyx_c_prod_double(a, b) ((a)*(b))
1370  #define __Pyx_c_quot_double(a, b) ((a)/(b))
1371  #define __Pyx_c_neg_double(a) (-(a))
1372  #ifdef __cplusplus
1373  #define __Pyx_c_is_zero_double(z) ((z)==(double)0)
1374  #define __Pyx_c_conj_double(z) (::std::conj(z))
1375  #if 1
1376  #define __Pyx_c_abs_double(z) (::std::abs(z))
1377  #define __Pyx_c_pow_double(a, b) (::std::pow(a, b))
1378  #endif
1379  #else
1380  #define __Pyx_c_is_zero_double(z) ((z)==0)
1381  #define __Pyx_c_conj_double(z) (conj(z))
1382  #if 1
1383  #define __Pyx_c_abs_double(z) (cabs(z))
1384  #define __Pyx_c_pow_double(a, b) (cpow(a, b))
1385  #endif
1386  #endif
1387 #else
1388  static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex);
1389  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex);
1390  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex);
1391  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex);
1392  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex);
1393  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex);
1394  static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex);
1395  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex);
1396  #if 1
1397  static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex);
1398  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex);
1399  #endif
1400 #endif
1401 
1402 /* CIntToPy.proto */
1403 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value);
1404 
1405 /* CIntFromPy.proto */
1406 static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
1407 
1408 /* CIntFromPy.proto */
1409 static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_As_Py_intptr_t(PyObject *);
1410 
1411 /* CIntFromPy.proto */
1412 static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
1413 
1414 /* CheckBinaryVersion.proto */
1415 static int __Pyx_check_binary_version(void);
1416 
1417 /* PyIdentifierFromString.proto */
1418 #if !defined(__Pyx_PyIdentifier_FromString)
1419 #if PY_MAJOR_VERSION < 3
1420  #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s)
1421 #else
1422  #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s)
1423 #endif
1424 #endif
1425 
1426 /* ModuleImport.proto */
1427 static PyObject *__Pyx_ImportModule(const char *name);
1428 
1429 /* TypeImport.proto */
1430 static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict);
1431 
1432 /* InitStrings.proto */
1433 static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
1434 
1435 
1436 /* Module declarations from 'cpython.buffer' */
1437 
1438 /* Module declarations from 'libc.string' */
1439 
1440 /* Module declarations from 'libc.stdio' */
1441 
1442 /* Module declarations from '__builtin__' */
1443 
1444 /* Module declarations from 'cpython.type' */
1445 static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0;
1446 
1447 /* Module declarations from 'cpython' */
1448 
1449 /* Module declarations from 'cpython.object' */
1450 
1451 /* Module declarations from 'cpython.ref' */
1452 
1453 /* Module declarations from 'libc.stdlib' */
1454 
1455 /* Module declarations from 'numpy' */
1456 
1457 /* Module declarations from 'numpy' */
1458 static PyTypeObject *__pyx_ptype_5numpy_dtype = 0;
1459 static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0;
1460 static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0;
1461 static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0;
1462 static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0;
1463 static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/
1464 
1465 /* Module declarations from 'subsurfaceTransportFunctions' */
1466 static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_ITYPE_t = { "ITYPE_t", NULL, sizeof(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t), 0 };
1467 static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_DTYPE_t = { "DTYPE_t", NULL, sizeof(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t), { 0 }, 0, 'R', 0, 0 };
1468 #define __Pyx_MODULE_NAME "subsurfaceTransportFunctions"
1469 int __pyx_module_is_main_subsurfaceTransportFunctions = 0;
1470 
1471 /* Implementation of 'subsurfaceTransportFunctions' */
1472 static PyObject *__pyx_builtin_range;
1473 static PyObject *__pyx_builtin_ValueError;
1474 static PyObject *__pyx_builtin_RuntimeError;
1475 static PyObject *__pyx_builtin_ImportError;
1476 static const char __pyx_k_I[] = "I";
1477 static const char __pyx_k_J[] = "J";
1478 static const char __pyx_k_d[] = "d";
1479 static const char __pyx_k_i[] = "i";
1480 static const char __pyx_k_j[] = "j";
1481 static const char __pyx_k_k[] = "k";
1482 static const char __pyx_k_m[] = "m";
1483 static const char __pyx_k_n[] = "n";
1484 static const char __pyx_k_q[] = "q";
1485 static const char __pyx_k_t[] = "t";
1486 static const char __pyx_k_v[] = "v";
1487 static const char __pyx_k_w[] = "w";
1488 static const char __pyx_k_x[] = "x";
1489 static const char __pyx_k_dS[] = "dS";
1490 static const char __pyx_k_dV[] = "dV";
1491 static const char __pyx_k_df[] = "df";
1492 static const char __pyx_k_dm[] = "dm";
1493 static const char __pyx_k_eN[] = "eN";
1494 static const char __pyx_k_ii[] = "ii";
1495 static const char __pyx_k_kb[] = "kb";
1496 static const char __pyx_k_mt[] = "mt";
1497 static const char __pyx_k_nd[] = "nd";
1498 static const char __pyx_k_pi[] = "pi";
1499 static const char __pyx_k_xc[] = "xc";
1500 static const char __pyx_k_yc[] = "yc";
1501 static const char __pyx_k_KWr[] = "KWr";
1502 static const char __pyx_k_KWs[] = "KWs";
1503 static const char __pyx_k_dmt[] = "dmt";
1504 static const char __pyx_k_dot[] = "dot";
1505 static const char __pyx_k_ebN[] = "ebN";
1506 static const char __pyx_k_l2g[] = "l2g";
1507 static const char __pyx_k_nnz[] = "nnz";
1508 static const char __pyx_k_q_m[] = "q_m";
1509 static const char __pyx_k_q_r[] = "q_r";
1510 static const char __pyx_k_q_u[] = "q_u";
1511 static const char __pyx_k_q_x[] = "q_x";
1512 static const char __pyx_k_rho[] = "rho";
1513 static const char __pyx_k_sum[] = "sum";
1514 static const char __pyx_k_u_j[] = "u_j";
1515 static const char __pyx_k_vol[] = "vol";
1516 static const char __pyx_k_a_eN[] = "a_eN";
1517 static const char __pyx_k_a_up[] = "a_up";
1518 static const char __pyx_k_beta[] = "beta";
1519 static const char __pyx_k_ebNE[] = "ebNE";
1520 static const char __pyx_k_f_up[] = "f_up";
1521 static const char __pyx_k_flat[] = "flat";
1522 static const char __pyx_k_flux[] = "flux";
1523 static const char __pyx_k_main[] = "__main__";
1524 static const char __pyx_k_one8[] = "one8";
1525 static const char __pyx_k_psiC[] = "psiC";
1526 static const char __pyx_k_q_dm[] = "q_dm";
1527 static const char __pyx_k_q_kr[] = "q_kr";
1528 static const char __pyx_k_q_mt[] = "q_mt";
1529 static const char __pyx_k_rho2[] = "rho2";
1530 static const char __pyx_k_rhom[] = "rhom";
1531 static const char __pyx_k_sBar[] = "sBar";
1532 static const char __pyx_k_test[] = "__test__";
1533 static const char __pyx_k_u_eN[] = "u_eN";
1534 static const char __pyx_k_vBar[] = "vBar";
1535 static const char __pyx_k_a_avg[] = "a_avg";
1536 static const char __pyx_k_alpha[] = "alpha";
1537 static const char __pyx_k_clock[] = "clock";
1538 static const char __pyx_k_denom[] = "denom";
1539 static const char __pyx_k_drhom[] = "drhom";
1540 static const char __pyx_k_kr_eN[] = "kr_eN";
1541 static const char __pyx_k_matID[] = "matID";
1542 static const char __pyx_k_numer[] = "numer";
1543 static const char __pyx_k_numpy[] = "numpy";
1544 static const char __pyx_k_pcBar[] = "pcBar";
1545 static const char __pyx_k_q_dkr[] = "q_dkr";
1546 static const char __pyx_k_q_dmt[] = "q_dmt";
1547 static const char __pyx_k_range[] = "range";
1548 static const char __pyx_k_shape[] = "shape";
1549 static const char __pyx_k_u_dof[] = "u_dof";
1550 static const char __pyx_k_u_l2g[] = "u_l2g";
1551 static const char __pyx_k_vBar2[] = "vBar2";
1552 static const char __pyx_k_vol_e[] = "vol_e";
1553 static const char __pyx_k_zeros[] = "zeros";
1554 static const char __pyx_k_a_neig[] = "a_neig";
1555 static const char __pyx_k_colind[] = "colind";
1556 static const char __pyx_k_dkr_up[] = "dkr_up";
1557 static const char __pyx_k_import[] = "__import__";
1558 static const char __pyx_k_mt_avg[] = "mt_avg";
1559 static const char __pyx_k_nSpace[] = "nSpace";
1560 static const char __pyx_k_phi_eN[] = "phi_eN";
1561 static const char __pyx_k_picard[] = "picard";
1562 static const char __pyx_k_q_alin[] = "q_alin";
1563 static const char __pyx_k_q_detJ[] = "q_detJ";
1564 static const char __pyx_k_q_flin[] = "q_flin";
1565 static const char __pyx_k_q_mass[] = "q_mass";
1566 static const char __pyx_k_q_vals[] = "q_vals";
1567 static const char __pyx_k_rowptr[] = "rowptr";
1568 static const char __pyx_k_thetaR[] = "thetaR";
1569 static const char __pyx_k_thetaS[] = "thetaS";
1570 static const char __pyx_k_thetaW[] = "thetaW";
1571 static const char __pyx_k_u_neig[] = "u_neig";
1572 static const char __pyx_k_volume[] = "volume";
1573 static const char __pyx_k_weight[] = "weight";
1574 static const char __pyx_k_df_dofs[] = "df_dofs";
1575 static const char __pyx_k_eN_left[] = "eN_left";
1576 static const char __pyx_k_gravity[] = "gravity";
1577 static const char __pyx_k_kr_neig[] = "kr_neig";
1578 static const char __pyx_k_nSpace2[] = "nSpace2";
1579 static const char __pyx_k_omega_e[] = "omega_e";
1580 static const char __pyx_k_pcBar_n[] = "pcBar_n";
1581 static const char __pyx_k_q_dmass[] = "q_dmass";
1582 static const char __pyx_k_q_kr_up[] = "q_kr_up";
1583 static const char __pyx_k_thetaSR[] = "thetaSR";
1584 static const char __pyx_k_dmtj_avg[] = "dmtj_avg";
1585 static const char __pyx_k_eN_right[] = "eN_right";
1586 static const char __pyx_k_ebq_vals[] = "ebq_vals";
1587 static const char __pyx_k_integral[] = "integral";
1588 static const char __pyx_k_material[] = "material";
1589 static const char __pyx_k_phi_neig[] = "phi_neig";
1590 static const char __pyx_k_q_grad_u[] = "q_grad_u";
1591 static const char __pyx_k_q_grad_v[] = "q_grad_v";
1592 static const char __pyx_k_q_grad_w[] = "q_grad_w";
1593 static const char __pyx_k_ebN_local[] = "ebN_local";
1594 static const char __pyx_k_pcBar_nM1[] = "pcBar_nM1";
1595 static const char __pyx_k_pcBar_nM2[] = "pcBar_nM2";
1596 static const char __pyx_k_sqrt_sBar[] = "sqrt_sBar";
1597 static const char __pyx_k_transient[] = "transient";
1598 static const char __pyx_k_volFactor[] = "volFactor";
1599 static const char __pyx_k_zVelocity[] = "zVelocity";
1600 static const char __pyx_k_zvelocity[] = "zvelocity";
1601 static const char __pyx_k_DKWr_DpsiC[] = "DKWr_DpsiC";
1602 static const char __pyx_k_ValueError[] = "ValueError";
1603 static const char __pyx_k_matID_neig[] = "matID_neig";
1604 static const char __pyx_k_nAvgWeight[] = "nAvgWeight";
1605 static const char __pyx_k_upwindFlag[] = "upwindFlag";
1606 static const char __pyx_k_DsBar_DpsiC[] = "DsBar_DpsiC";
1607 static const char __pyx_k_DvBar_DpsiC[] = "DvBar_DpsiC";
1608 static const char __pyx_k_ImportError[] = "ImportError";
1609 static const char __pyx_k_eN_neighbor[] = "eN_neighbor";
1610 static const char __pyx_k_RuntimeError[] = "RuntimeError";
1611 static const char __pyx_k_tForReversal[] = "tForReversal";
1612 static const char __pyx_k_DthetaW_DpsiC[] = "DthetaW_DpsiC";
1613 static const char __pyx_k_material_left[] = "material_left";
1614 static const char __pyx_k_weak_residual[] = "weak_residual";
1615 static const char __pyx_k_material_right[] = "material_right";
1616 static const char __pyx_k_ebq_global_vals[] = "ebq_global_vals";
1617 static const char __pyx_k_elementJacobian[] = "elementJacobian";
1618 static const char __pyx_k_elementResidual[] = "elementResidual";
1619 static const char __pyx_k_onePlus_pcBar_n[] = "onePlus_pcBar_n";
1620 static const char __pyx_k_nElements_global[] = "nElements_global";
1621 static const char __pyx_k_nDOF_test_element[] = "nDOF_test_element";
1622 static const char __pyx_k_material_functions[] = "material_functions";
1623 static const char __pyx_k_nDOF_trial_element[] = "nDOF_trial_element";
1624 static const char __pyx_k_updateMass_weakAvg[] = "updateMass_weakAvg";
1625 static const char __pyx_k_calculateNormalFlux[] = "calculateNormalFlux";
1626 static const char __pyx_k_thisElementIsUpwind[] = "thisElementIsUpwind";
1627 static const char __pyx_k_elementBoundaryTypes[] = "elementBoundaryTypes";
1628 static const char __pyx_k_elementMaterialTypes[] = "elementMaterialTypes";
1629 static const char __pyx_k_elementNeighborsArray[] = "elementNeighborsArray";
1630 static const char __pyx_k_elementBoundariesArray[] = "elementBoundariesArray";
1631 static const char __pyx_k_jacobian_weak_residual[] = "jacobian_weak_residual";
1632 static const char __pyx_k_characteristic_velocity[] = "characteristic_velocity";
1633 static const char __pyx_k_elementBarycentersArray[] = "elementBarycentersArray";
1634 static const char __pyx_k_nElementBoundaries_global[] = "nElementBoundaries_global";
1635 static const char __pyx_k_setElementBoundariesArray[] = "setElementBoundariesArray";
1636 static const char __pyx_k_RE_NCP1_getElementJacobian[] = "RE_NCP1_getElementJacobian";
1637 static const char __pyx_k_RE_NCP1_getElementResidual[] = "RE_NCP1_getElementResidual";
1638 static const char __pyx_k_nElementBoundaries_element[] = "nElementBoundaries_element";
1639 static const char __pyx_k_updateMassJacobian_weakAvg[] = "updateMassJacobian_weakAvg";
1640 static const char __pyx_k_vortexElementVelocityEval3[] = "vortexElementVelocityEval3";
1641 static const char __pyx_k_vortexElementVelocityEval4[] = "vortexElementVelocityEval4";
1642 static const char __pyx_k_helicalElementVelocityEval3[] = "helicalElementVelocityEval3";
1643 static const char __pyx_k_helicalElementVelocityEval4[] = "helicalElementVelocityEval4";
1644 static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous";
1645 static const char __pyx_k_characteristic_velocity_dofs[] = "characteristic_velocity_dofs";
1646 static const char __pyx_k_elementBoundaryElementsArray[] = "elementBoundaryElementsArray";
1647 static const char __pyx_k_elementBoundaryMaterialTypes[] = "elementBoundaryMaterialTypes";
1648 static const char __pyx_k_subsurfaceTransportFunctions[] = "subsurfaceTransportFunctions";
1649 static const char __pyx_k_exteriorElementBoundariesArray[] = "exteriorElementBoundariesArray";
1650 static const char __pyx_k_home_cekees_proteus_proteus_sub[] = "/home/cekees/proteus/proteus/subsurfaceTransportFunctions.pyx";
1651 static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import";
1652 static const char __pyx_k_setExteriorElementBoundaryTypes[] = "setExteriorElementBoundaryTypes";
1653 static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)";
1654 static const char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd";
1655 static const char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported";
1656 static const char __pyx_k_RE_NCP1_evaluateElementCoefficie[] = "RE_NCP1_evaluateElementCoefficients_Linear";
1657 static const char __pyx_k_computeSimpleCharacteristicVeloc[] = "computeSimpleCharacteristicVelocityFromElementVelocity";
1658 static const char __pyx_k_evaluateScalarMaterialFunctionOv[] = "evaluateScalarMaterialFunctionOverElements";
1659 static const char __pyx_k_evaluateSparseTensorMaterialFunc[] = "evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage";
1660 static const char __pyx_k_evaluateVectorMaterialFunctionOv[] = "evaluateVectorMaterialFunctionOverElements";
1661 static const char __pyx_k_exteriorElementBoundaryMaterialT[] = "exteriorElementBoundaryMaterialTypes";
1662 static const char __pyx_k_nExteriorElementBoundaries_globa[] = "nExteriorElementBoundaries_global";
1663 static const char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous";
1664 static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import";
1665 static const char __pyx_k_rotatingGaussianElementVelocityE[] = "rotatingGaussianElementVelocityEval3";
1666 static const char __pyx_k_setScalarMaterialFunctionOverEle[] = "setScalarMaterialFunctionOverElements";
1667 static const char __pyx_k_setScalarMaterialFunctionOverGlo[] = "setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage";
1668 static const char __pyx_k_setSparseTensorMaterialFunctionO[] = "setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage";
1669 static const char __pyx_k_setVectorMaterialFunctionOverEle[] = "setVectorMaterialFunctionOverElements";
1670 static const char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short.";
1671 static const char __pyx_k_RE_NCP1_evaluateElementCoefficie_2[] = "RE_NCP1_evaluateElementCoefficients_VGM";
1672 static const char __pyx_k_computeSimpleCharacteristicVeloc_2[] = "computeSimpleCharacteristicVelocityFromVelocityDOFs";
1673 static const char __pyx_k_evaluateScalarMaterialFunctionOv_2[] = "evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage";
1674 static const char __pyx_k_evaluateScalarMaterialFunctionOv_3[] = "evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage";
1675 static const char __pyx_k_evaluateSparseTensorMaterialFunc_2[] = "evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage";
1676 static const char __pyx_k_rotatingGaussianElementVelocityE_2[] = "rotatingGaussianElementVelocityEval4";
1677 static const char __pyx_k_setScalarMaterialFunctionOverEle_2[] = "setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage";
1678 static const char __pyx_k_setSparseTensorMaterialFunctionO_2[] = "setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage";
1679 static PyObject *__pyx_n_s_DKWr_DpsiC;
1680 static PyObject *__pyx_n_s_DsBar_DpsiC;
1681 static PyObject *__pyx_n_s_DthetaW_DpsiC;
1682 static PyObject *__pyx_n_s_DvBar_DpsiC;
1683 static PyObject *__pyx_kp_u_Format_string_allocated_too_shor;
1684 static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2;
1685 static PyObject *__pyx_n_s_I;
1686 static PyObject *__pyx_n_s_ImportError;
1687 static PyObject *__pyx_n_s_J;
1688 static PyObject *__pyx_n_s_KWr;
1689 static PyObject *__pyx_n_s_KWs;
1690 static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor;
1691 static PyObject *__pyx_n_s_RE_NCP1_evaluateElementCoefficie;
1692 static PyObject *__pyx_n_s_RE_NCP1_evaluateElementCoefficie_2;
1693 static PyObject *__pyx_n_s_RE_NCP1_getElementJacobian;
1694 static PyObject *__pyx_n_s_RE_NCP1_getElementResidual;
1695 static PyObject *__pyx_n_s_RuntimeError;
1696 static PyObject *__pyx_n_s_ValueError;
1697 static PyObject *__pyx_n_s_a_avg;
1698 static PyObject *__pyx_n_s_a_eN;
1699 static PyObject *__pyx_n_s_a_neig;
1700 static PyObject *__pyx_n_s_a_up;
1701 static PyObject *__pyx_n_s_alpha;
1702 static PyObject *__pyx_n_s_beta;
1703 static PyObject *__pyx_n_s_calculateNormalFlux;
1704 static PyObject *__pyx_n_s_characteristic_velocity;
1705 static PyObject *__pyx_n_s_characteristic_velocity_dofs;
1706 static PyObject *__pyx_n_s_clock;
1707 static PyObject *__pyx_n_s_colind;
1708 static PyObject *__pyx_n_s_computeSimpleCharacteristicVeloc;
1709 static PyObject *__pyx_n_s_computeSimpleCharacteristicVeloc_2;
1710 static PyObject *__pyx_n_s_d;
1711 static PyObject *__pyx_n_s_dS;
1712 static PyObject *__pyx_n_s_dV;
1713 static PyObject *__pyx_n_s_denom;
1714 static PyObject *__pyx_n_s_df;
1715 static PyObject *__pyx_n_s_df_dofs;
1716 static PyObject *__pyx_n_s_dkr_up;
1717 static PyObject *__pyx_n_s_dm;
1718 static PyObject *__pyx_n_s_dmt;
1719 static PyObject *__pyx_n_s_dmtj_avg;
1720 static PyObject *__pyx_n_s_dot;
1721 static PyObject *__pyx_n_s_drhom;
1722 static PyObject *__pyx_n_s_eN;
1723 static PyObject *__pyx_n_s_eN_left;
1724 static PyObject *__pyx_n_s_eN_neighbor;
1725 static PyObject *__pyx_n_s_eN_right;
1726 static PyObject *__pyx_n_s_ebN;
1727 static PyObject *__pyx_n_s_ebNE;
1728 static PyObject *__pyx_n_s_ebN_local;
1729 static PyObject *__pyx_n_s_ebq_global_vals;
1730 static PyObject *__pyx_n_s_ebq_vals;
1731 static PyObject *__pyx_n_s_elementBarycentersArray;
1732 static PyObject *__pyx_n_s_elementBoundariesArray;
1733 static PyObject *__pyx_n_s_elementBoundaryElementsArray;
1734 static PyObject *__pyx_n_s_elementBoundaryMaterialTypes;
1735 static PyObject *__pyx_n_s_elementBoundaryTypes;
1736 static PyObject *__pyx_n_s_elementJacobian;
1737 static PyObject *__pyx_n_s_elementMaterialTypes;
1738 static PyObject *__pyx_n_s_elementNeighborsArray;
1739 static PyObject *__pyx_n_s_elementResidual;
1740 static PyObject *__pyx_n_s_evaluateScalarMaterialFunctionOv;
1741 static PyObject *__pyx_n_s_evaluateScalarMaterialFunctionOv_2;
1742 static PyObject *__pyx_n_s_evaluateScalarMaterialFunctionOv_3;
1743 static PyObject *__pyx_n_s_evaluateSparseTensorMaterialFunc;
1744 static PyObject *__pyx_n_s_evaluateSparseTensorMaterialFunc_2;
1745 static PyObject *__pyx_n_s_evaluateVectorMaterialFunctionOv;
1746 static PyObject *__pyx_n_s_exteriorElementBoundariesArray;
1747 static PyObject *__pyx_n_s_exteriorElementBoundaryMaterialT;
1748 static PyObject *__pyx_n_s_f_up;
1749 static PyObject *__pyx_n_s_flat;
1750 static PyObject *__pyx_n_s_flux;
1751 static PyObject *__pyx_n_s_gravity;
1752 static PyObject *__pyx_n_s_helicalElementVelocityEval3;
1753 static PyObject *__pyx_n_s_helicalElementVelocityEval4;
1754 static PyObject *__pyx_kp_s_home_cekees_proteus_proteus_sub;
1755 static PyObject *__pyx_n_s_i;
1756 static PyObject *__pyx_n_s_ii;
1757 static PyObject *__pyx_n_s_import;
1758 static PyObject *__pyx_n_s_integral;
1759 static PyObject *__pyx_n_s_j;
1760 static PyObject *__pyx_n_s_jacobian_weak_residual;
1761 static PyObject *__pyx_n_s_k;
1762 static PyObject *__pyx_n_s_kb;
1763 static PyObject *__pyx_n_s_kr_eN;
1764 static PyObject *__pyx_n_s_kr_neig;
1765 static PyObject *__pyx_n_s_l2g;
1766 static PyObject *__pyx_n_s_m;
1767 static PyObject *__pyx_n_s_main;
1768 static PyObject *__pyx_n_s_matID;
1769 static PyObject *__pyx_n_s_matID_neig;
1770 static PyObject *__pyx_n_s_material;
1771 static PyObject *__pyx_n_s_material_functions;
1772 static PyObject *__pyx_n_s_material_left;
1773 static PyObject *__pyx_n_s_material_right;
1774 static PyObject *__pyx_n_s_mt;
1775 static PyObject *__pyx_n_s_mt_avg;
1776 static PyObject *__pyx_n_s_n;
1777 static PyObject *__pyx_n_s_nAvgWeight;
1778 static PyObject *__pyx_n_s_nDOF_test_element;
1779 static PyObject *__pyx_n_s_nDOF_trial_element;
1780 static PyObject *__pyx_n_s_nElementBoundaries_element;
1781 static PyObject *__pyx_n_s_nElementBoundaries_global;
1782 static PyObject *__pyx_n_s_nElements_global;
1783 static PyObject *__pyx_n_s_nExteriorElementBoundaries_globa;
1784 static PyObject *__pyx_n_s_nSpace;
1785 static PyObject *__pyx_n_s_nSpace2;
1786 static PyObject *__pyx_n_s_nd;
1787 static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous;
1788 static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou;
1789 static PyObject *__pyx_n_s_nnz;
1790 static PyObject *__pyx_n_s_numer;
1791 static PyObject *__pyx_n_s_numpy;
1792 static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to;
1793 static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor;
1794 static PyObject *__pyx_n_s_omega_e;
1795 static PyObject *__pyx_n_s_one8;
1796 static PyObject *__pyx_n_s_onePlus_pcBar_n;
1797 static PyObject *__pyx_n_s_pcBar;
1798 static PyObject *__pyx_n_s_pcBar_n;
1799 static PyObject *__pyx_n_s_pcBar_nM1;
1800 static PyObject *__pyx_n_s_pcBar_nM2;
1801 static PyObject *__pyx_n_s_phi_eN;
1802 static PyObject *__pyx_n_s_phi_neig;
1803 static PyObject *__pyx_n_s_pi;
1804 static PyObject *__pyx_n_s_picard;
1805 static PyObject *__pyx_n_s_psiC;
1806 static PyObject *__pyx_n_s_q;
1807 static PyObject *__pyx_n_s_q_alin;
1808 static PyObject *__pyx_n_s_q_detJ;
1809 static PyObject *__pyx_n_s_q_dkr;
1810 static PyObject *__pyx_n_s_q_dm;
1811 static PyObject *__pyx_n_s_q_dmass;
1812 static PyObject *__pyx_n_s_q_dmt;
1813 static PyObject *__pyx_n_s_q_flin;
1814 static PyObject *__pyx_n_s_q_grad_u;
1815 static PyObject *__pyx_n_s_q_grad_v;
1816 static PyObject *__pyx_n_s_q_grad_w;
1817 static PyObject *__pyx_n_s_q_kr;
1818 static PyObject *__pyx_n_s_q_kr_up;
1819 static PyObject *__pyx_n_s_q_m;
1820 static PyObject *__pyx_n_s_q_mass;
1821 static PyObject *__pyx_n_s_q_mt;
1822 static PyObject *__pyx_n_s_q_r;
1823 static PyObject *__pyx_n_s_q_u;
1824 static PyObject *__pyx_n_s_q_vals;
1825 static PyObject *__pyx_n_s_q_x;
1826 static PyObject *__pyx_n_s_range;
1827 static PyObject *__pyx_n_s_rho;
1828 static PyObject *__pyx_n_s_rho2;
1829 static PyObject *__pyx_n_s_rhom;
1830 static PyObject *__pyx_n_s_rotatingGaussianElementVelocityE;
1831 static PyObject *__pyx_n_s_rotatingGaussianElementVelocityE_2;
1832 static PyObject *__pyx_n_s_rowptr;
1833 static PyObject *__pyx_n_s_sBar;
1834 static PyObject *__pyx_n_s_setElementBoundariesArray;
1835 static PyObject *__pyx_n_s_setExteriorElementBoundaryTypes;
1836 static PyObject *__pyx_n_s_setScalarMaterialFunctionOverEle;
1837 static PyObject *__pyx_n_s_setScalarMaterialFunctionOverEle_2;
1838 static PyObject *__pyx_n_s_setScalarMaterialFunctionOverGlo;
1839 static PyObject *__pyx_n_s_setSparseTensorMaterialFunctionO;
1840 static PyObject *__pyx_n_s_setSparseTensorMaterialFunctionO_2;
1841 static PyObject *__pyx_n_s_setVectorMaterialFunctionOverEle;
1842 static PyObject *__pyx_n_s_shape;
1843 static PyObject *__pyx_n_s_sqrt_sBar;
1844 static PyObject *__pyx_n_s_subsurfaceTransportFunctions;
1845 static PyObject *__pyx_n_s_sum;
1846 static PyObject *__pyx_n_s_t;
1847 static PyObject *__pyx_n_s_tForReversal;
1848 static PyObject *__pyx_n_s_test;
1849 static PyObject *__pyx_n_s_thetaR;
1850 static PyObject *__pyx_n_s_thetaS;
1851 static PyObject *__pyx_n_s_thetaSR;
1852 static PyObject *__pyx_n_s_thetaW;
1853 static PyObject *__pyx_n_s_thisElementIsUpwind;
1854 static PyObject *__pyx_n_s_transient;
1855 static PyObject *__pyx_n_s_u_dof;
1856 static PyObject *__pyx_n_s_u_eN;
1857 static PyObject *__pyx_n_s_u_j;
1858 static PyObject *__pyx_n_s_u_l2g;
1859 static PyObject *__pyx_n_s_u_neig;
1860 static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd;
1861 static PyObject *__pyx_n_s_updateMassJacobian_weakAvg;
1862 static PyObject *__pyx_n_s_updateMass_weakAvg;
1863 static PyObject *__pyx_n_s_upwindFlag;
1864 static PyObject *__pyx_n_s_v;
1865 static PyObject *__pyx_n_s_vBar;
1866 static PyObject *__pyx_n_s_vBar2;
1867 static PyObject *__pyx_n_s_vol;
1868 static PyObject *__pyx_n_s_volFactor;
1869 static PyObject *__pyx_n_s_vol_e;
1870 static PyObject *__pyx_n_s_volume;
1871 static PyObject *__pyx_n_s_vortexElementVelocityEval3;
1872 static PyObject *__pyx_n_s_vortexElementVelocityEval4;
1873 static PyObject *__pyx_n_s_w;
1874 static PyObject *__pyx_n_s_weak_residual;
1875 static PyObject *__pyx_n_s_weight;
1876 static PyObject *__pyx_n_s_x;
1877 static PyObject *__pyx_n_s_xc;
1878 static PyObject *__pyx_n_s_yc;
1879 static PyObject *__pyx_n_s_zVelocity;
1880 static PyObject *__pyx_n_s_zeros;
1881 static PyObject *__pyx_n_s_zvelocity;
1882 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_setExteriorElementBoundaryTypes(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nExteriorElementBoundaries_global, PyArrayObject *__pyx_v_exteriorElementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryElementsArray, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_exteriorElementBoundaryMaterialTypes); /* proto */
1883 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_2setElementBoundariesArray(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nElementBoundaries_global, PyArrayObject *__pyx_v_elementBoundaryElementsArray, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_elementBoundaryMaterialTypes); /* proto */
1884 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_4setScalarMaterialFunctionOverElements(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_q_vals, PyObject *__pyx_v_material_functions); /* proto */
1885 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_6setVectorMaterialFunctionOverElements(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_q_vals, PyObject *__pyx_v_material_functions); /* proto */
1886 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_8setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_ebq_vals, PyObject *__pyx_v_material_functions); /* proto */
1887 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_10setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nd, PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_ebq_vals, PyObject *__pyx_v_material_functions); /* proto */
1888 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_12setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_ebq_global_vals, PyObject *__pyx_v_material_functions); /* proto */
1889 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_14setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nd, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_ebq_global_vals, PyObject *__pyx_v_material_functions); /* proto */
1890 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_16evaluateScalarMaterialFunctionOverElements(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_q_vals, PyObject *__pyx_v_material_functions); /* proto */
1891 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_18evaluateVectorMaterialFunctionOverElements(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_q_vals, PyObject *__pyx_v_material_functions); /* proto */
1892 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_20evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_ebq_vals, PyObject *__pyx_v_material_functions); /* proto */
1893 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_22evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nd, double __pyx_v_t, PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_ebq_vals, PyObject *__pyx_v_material_functions); /* proto */
1894 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_24evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_ebq_global_vals, PyObject *__pyx_v_material_functions); /* proto */
1895 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_26evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nd, double __pyx_v_t, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_ebq_global_vals, PyObject *__pyx_v_material_functions); /* proto */
1896 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_28RE_NCP1_evaluateElementCoefficients_Linear(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_rho, PyArrayObject *__pyx_v_gravity, PyArrayObject *__pyx_v_rowptr, PyArrayObject *__pyx_v_colind, PyArrayObject *__pyx_v_KWs, int __pyx_v_nSpace, int __pyx_v_nElements_global, int __pyx_v_nElementBoundaries_element, PyArrayObject *__pyx_v_elementNeighborsArray, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_q_flin, PyArrayObject *__pyx_v_q_alin); /* proto */
1897 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_30RE_NCP1_evaluateElementCoefficients_VGM(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_rho, double __pyx_v_beta, PyArrayObject *__pyx_v_gravity, PyArrayObject *__pyx_v_alpha, PyArrayObject *__pyx_v_n, PyArrayObject *__pyx_v_thetaR, PyArrayObject *__pyx_v_thetaSR, int __pyx_v_nSpace, int __pyx_v_nElements_global, int __pyx_v_nElementBoundaries_element, PyArrayObject *__pyx_v_elementNeighborsArray, PyArrayObject *__pyx_v_elementBarycentersArray, PyArrayObject *__pyx_v_elementMaterialTypes, int __pyx_v_nDOF_trial_element, PyArrayObject *__pyx_v_u_l2g, PyArrayObject *__pyx_v_u_dof, CYTHON_UNUSED PyArrayObject *__pyx_v_q_x, PyArrayObject *__pyx_v_q_u, PyArrayObject *__pyx_v_q_mass, PyArrayObject *__pyx_v_q_dmass, PyArrayObject *__pyx_v_q_r, PyArrayObject *__pyx_v_q_kr, PyArrayObject *__pyx_v_q_dkr, PyArrayObject *__pyx_v_q_kr_up); /* proto */
1898 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_32RE_NCP1_getElementResidual(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyArrayObject *__pyx_v_gravity, PyArrayObject *__pyx_v_rowptr, PyArrayObject *__pyx_v_colind, int __pyx_v_nSpace, int __pyx_v_nElements_global, int __pyx_v_nElementBoundaries_element, CYTHON_UNUSED PyArrayObject *__pyx_v_elementNeighborsArray, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBarycentersArray, int __pyx_v_nDOF_test_element, PyArrayObject *__pyx_v_q_u, PyArrayObject *__pyx_v_q_grad_u, PyArrayObject *__pyx_v_q_grad_w, PyArrayObject *__pyx_v_q_detJ, PyArrayObject *__pyx_v_q_m, PyArrayObject *__pyx_v_q_mt, PyArrayObject *__pyx_v_q_r, PyArrayObject *__pyx_v_q_kr, PyArrayObject *__pyx_v_q_kr_up, PyArrayObject *__pyx_v_q_flin, PyArrayObject *__pyx_v_q_alin, PyArrayObject *__pyx_v_elementResidual); /* proto */
1899 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_34RE_NCP1_getElementJacobian(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyArrayObject *__pyx_v_gravity, PyArrayObject *__pyx_v_rowptr, PyArrayObject *__pyx_v_colind, int __pyx_v_nSpace, int __pyx_v_nElements_global, int __pyx_v_nElementBoundaries_element, CYTHON_UNUSED PyArrayObject *__pyx_v_elementNeighborsArray, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBarycentersArray, int __pyx_v_nDOF_test_element, int __pyx_v_nDOF_trial_element, PyArrayObject *__pyx_v_q_u, CYTHON_UNUSED PyArrayObject *__pyx_v_q_grad_u, PyArrayObject *__pyx_v_q_grad_w, PyArrayObject *__pyx_v_q_grad_v, PyArrayObject *__pyx_v_q_detJ, PyArrayObject *__pyx_v_q_m, CYTHON_UNUSED PyArrayObject *__pyx_v_q_dm, PyArrayObject *__pyx_v_q_mt, PyArrayObject *__pyx_v_q_dmt, PyArrayObject *__pyx_v_q_r, PyArrayObject *__pyx_v_q_kr, CYTHON_UNUSED PyArrayObject *__pyx_v_q_dkr, PyArrayObject *__pyx_v_q_kr_up, PyArrayObject *__pyx_v_q_flin, PyArrayObject *__pyx_v_q_alin, PyArrayObject *__pyx_v_elementJacobian); /* proto */
1900 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_36updateMass_weakAvg(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_mt, PyArrayObject *__pyx_v_w, PyArrayObject *__pyx_v_dV, PyArrayObject *__pyx_v_weak_residual); /* proto */
1901 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_38updateMassJacobian_weakAvg(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dmt, PyArrayObject *__pyx_v_w, PyArrayObject *__pyx_v_v, PyArrayObject *__pyx_v_dV, PyArrayObject *__pyx_v_jacobian_weak_residual); /* proto */
1902 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_40calculateNormalFlux(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_v, PyArrayObject *__pyx_v_n, PyArrayObject *__pyx_v_dS, PyArrayObject *__pyx_v_flux); /* proto */
1903 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_42computeSimpleCharacteristicVelocityFromElementVelocity(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_df, PyArrayObject *__pyx_v_characteristic_velocity, PyArrayObject *__pyx_v_dm, PyArrayObject *__pyx_v_dV); /* proto */
1904 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_44computeSimpleCharacteristicVelocityFromVelocityDOFs(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_df_dofs, PyArrayObject *__pyx_v_characteristic_velocity_dofs, PyArrayObject *__pyx_v_l2g, PyArrayObject *__pyx_v_dm, PyArrayObject *__pyx_v_dV); /* proto */
1905 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_46rotatingGaussianElementVelocityEval3(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_transient, double __pyx_v_t, double __pyx_v_tForReversal, double __pyx_v_clock, double __pyx_v_xc, double __pyx_v_yc, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v, double __pyx_v_zvelocity); /* proto */
1906 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_48rotatingGaussianElementVelocityEval4(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_transient, double __pyx_v_t, double __pyx_v_tForReversal, double __pyx_v_clock, double __pyx_v_xc, double __pyx_v_yc, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v, double __pyx_v_zvelocity); /* proto */
1907 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_50helicalElementVelocityEval3(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_transient, double __pyx_v_t, double __pyx_v_tForReversal, double __pyx_v_clock, double __pyx_v_zVelocity, double __pyx_v_xc, double __pyx_v_yc, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v); /* proto */
1908 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_52helicalElementVelocityEval4(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_transient, double __pyx_v_t, double __pyx_v_tForReversal, double __pyx_v_clock, double __pyx_v_zVelocity, double __pyx_v_xc, double __pyx_v_yc, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v); /* proto */
1909 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_54vortexElementVelocityEval3(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v); /* proto */
1910 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_56vortexElementVelocityEval4(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v); /* proto */
1911 static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
1912 static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */
1913 static PyObject *__pyx_float_0_0;
1914 static PyObject *__pyx_float_0_5;
1915 static PyObject *__pyx_float_2_0;
1916 static PyObject *__pyx_float_1_0eneg_20;
1917 static PyObject *__pyx_slice_;
1918 static PyObject *__pyx_slice__2;
1919 static PyObject *__pyx_slice__3;
1920 static PyObject *__pyx_slice__4;
1921 static PyObject *__pyx_slice__5;
1922 static PyObject *__pyx_slice__6;
1923 static PyObject *__pyx_slice__7;
1924 static PyObject *__pyx_slice__8;
1925 static PyObject *__pyx_tuple__9;
1926 static PyObject *__pyx_tuple__10;
1927 static PyObject *__pyx_tuple__11;
1928 static PyObject *__pyx_tuple__12;
1929 static PyObject *__pyx_tuple__13;
1930 static PyObject *__pyx_tuple__14;
1931 static PyObject *__pyx_tuple__15;
1932 static PyObject *__pyx_tuple__16;
1933 static PyObject *__pyx_tuple__17;
1934 static PyObject *__pyx_tuple__18;
1935 static PyObject *__pyx_tuple__20;
1936 static PyObject *__pyx_tuple__22;
1937 static PyObject *__pyx_tuple__24;
1938 static PyObject *__pyx_tuple__26;
1939 static PyObject *__pyx_tuple__28;
1940 static PyObject *__pyx_tuple__30;
1941 static PyObject *__pyx_tuple__32;
1942 static PyObject *__pyx_tuple__34;
1943 static PyObject *__pyx_tuple__36;
1944 static PyObject *__pyx_tuple__38;
1945 static PyObject *__pyx_tuple__40;
1946 static PyObject *__pyx_tuple__42;
1947 static PyObject *__pyx_tuple__44;
1948 static PyObject *__pyx_tuple__46;
1949 static PyObject *__pyx_tuple__48;
1950 static PyObject *__pyx_tuple__50;
1951 static PyObject *__pyx_tuple__52;
1952 static PyObject *__pyx_tuple__54;
1953 static PyObject *__pyx_tuple__56;
1954 static PyObject *__pyx_tuple__58;
1955 static PyObject *__pyx_tuple__60;
1956 static PyObject *__pyx_tuple__62;
1957 static PyObject *__pyx_tuple__64;
1958 static PyObject *__pyx_tuple__66;
1959 static PyObject *__pyx_tuple__68;
1960 static PyObject *__pyx_tuple__70;
1961 static PyObject *__pyx_tuple__72;
1962 static PyObject *__pyx_tuple__74;
1963 static PyObject *__pyx_codeobj__19;
1964 static PyObject *__pyx_codeobj__21;
1965 static PyObject *__pyx_codeobj__23;
1966 static PyObject *__pyx_codeobj__25;
1967 static PyObject *__pyx_codeobj__27;
1968 static PyObject *__pyx_codeobj__29;
1969 static PyObject *__pyx_codeobj__31;
1970 static PyObject *__pyx_codeobj__33;
1971 static PyObject *__pyx_codeobj__35;
1972 static PyObject *__pyx_codeobj__37;
1973 static PyObject *__pyx_codeobj__39;
1974 static PyObject *__pyx_codeobj__41;
1975 static PyObject *__pyx_codeobj__43;
1976 static PyObject *__pyx_codeobj__45;
1977 static PyObject *__pyx_codeobj__47;
1978 static PyObject *__pyx_codeobj__49;
1979 static PyObject *__pyx_codeobj__51;
1980 static PyObject *__pyx_codeobj__53;
1981 static PyObject *__pyx_codeobj__55;
1982 static PyObject *__pyx_codeobj__57;
1983 static PyObject *__pyx_codeobj__59;
1984 static PyObject *__pyx_codeobj__61;
1985 static PyObject *__pyx_codeobj__63;
1986 static PyObject *__pyx_codeobj__65;
1987 static PyObject *__pyx_codeobj__67;
1988 static PyObject *__pyx_codeobj__69;
1989 static PyObject *__pyx_codeobj__71;
1990 static PyObject *__pyx_codeobj__73;
1991 static PyObject *__pyx_codeobj__75;
1992 
1993 /* "subsurfaceTransportFunctions.pyx":11
1994  * double sin(double x)
1995  * double M_PI
1996  * cdef inline double double_max(double a, double b): return a if a >= b else b # <<<<<<<<<<<<<<
1997  * cdef inline double double_min(double a, double b): return a if a <= b else b
1998  *
1999  */
2000 
2001 static CYTHON_INLINE double __pyx_f_28subsurfaceTransportFunctions_double_max(double __pyx_v_a, double __pyx_v_b) {
2002  double __pyx_r;
2003  __Pyx_RefNannyDeclarations
2004  double __pyx_t_1;
2005  __Pyx_RefNannySetupContext("double_max", 0);
2006  if (((__pyx_v_a >= __pyx_v_b) != 0)) {
2007  __pyx_t_1 = __pyx_v_a;
2008  } else {
2009  __pyx_t_1 = __pyx_v_b;
2010  }
2011  __pyx_r = __pyx_t_1;
2012  goto __pyx_L0;
2013 
2014  /* function exit code */
2015  __pyx_L0:;
2016  __Pyx_RefNannyFinishContext();
2017  return __pyx_r;
2018 }
2019 
2020 /* "subsurfaceTransportFunctions.pyx":12
2021  * double M_PI
2022  * cdef inline double double_max(double a, double b): return a if a >= b else b
2023  * cdef inline double double_min(double a, double b): return a if a <= b else b # <<<<<<<<<<<<<<
2024  *
2025  * ctypedef numpy.double_t DTYPE_t
2026  */
2027 
2028 static CYTHON_INLINE double __pyx_f_28subsurfaceTransportFunctions_double_min(double __pyx_v_a, double __pyx_v_b) {
2029  double __pyx_r;
2030  __Pyx_RefNannyDeclarations
2031  double __pyx_t_1;
2032  __Pyx_RefNannySetupContext("double_min", 0);
2033  if (((__pyx_v_a <= __pyx_v_b) != 0)) {
2034  __pyx_t_1 = __pyx_v_a;
2035  } else {
2036  __pyx_t_1 = __pyx_v_b;
2037  }
2038  __pyx_r = __pyx_t_1;
2039  goto __pyx_L0;
2040 
2041  /* function exit code */
2042  __pyx_L0:;
2043  __Pyx_RefNannyFinishContext();
2044  return __pyx_r;
2045 }
2046 
2047 /* "subsurfaceTransportFunctions.pyx":18
2048  * ctypedef int ITYPE_t
2049  *
2050  * def setExteriorElementBoundaryTypes(int nExteriorElementBoundaries_global, # <<<<<<<<<<<<<<
2051  * numpy.ndarray[ITYPE_t,ndim=1] exteriorElementBoundariesArray,
2052  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
2053  */
2054 
2055 /* Python wrapper */
2056 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_1setExteriorElementBoundaryTypes(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
2057 static PyMethodDef __pyx_mdef_28subsurfaceTransportFunctions_1setExteriorElementBoundaryTypes = {"setExteriorElementBoundaryTypes", (PyCFunction)__pyx_pw_28subsurfaceTransportFunctions_1setExteriorElementBoundaryTypes, METH_VARARGS|METH_KEYWORDS, 0};
2058 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_1setExteriorElementBoundaryTypes(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
2059  int __pyx_v_nExteriorElementBoundaries_global;
2060  PyArrayObject *__pyx_v_exteriorElementBoundariesArray = 0;
2061  PyArrayObject *__pyx_v_elementBoundaryElementsArray = 0;
2062  PyArrayObject *__pyx_v_elementMaterialTypes = 0;
2063  PyArrayObject *__pyx_v_exteriorElementBoundaryMaterialTypes = 0;
2064  PyObject *__pyx_r = 0;
2065  __Pyx_RefNannyDeclarations
2066  __Pyx_RefNannySetupContext("setExteriorElementBoundaryTypes (wrapper)", 0);
2067  {
2068  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_nExteriorElementBoundaries_globa,&__pyx_n_s_exteriorElementBoundariesArray,&__pyx_n_s_elementBoundaryElementsArray,&__pyx_n_s_elementMaterialTypes,&__pyx_n_s_exteriorElementBoundaryMaterialT,0};
2069  PyObject* values[5] = {0,0,0,0,0};
2070  if (unlikely(__pyx_kwds)) {
2071  Py_ssize_t kw_args;
2072  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
2073  switch (pos_args) {
2074  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
2075  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
2076  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
2077  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
2078  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
2079  case 0: break;
2080  default: goto __pyx_L5_argtuple_error;
2081  }
2082  kw_args = PyDict_Size(__pyx_kwds);
2083  switch (pos_args) {
2084  case 0:
2085  if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nExteriorElementBoundaries_globa)) != 0)) kw_args--;
2086  else goto __pyx_L5_argtuple_error;
2087  case 1:
2088  if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_exteriorElementBoundariesArray)) != 0)) kw_args--;
2089  else {
2090  __Pyx_RaiseArgtupleInvalid("setExteriorElementBoundaryTypes", 1, 5, 5, 1); __PYX_ERR(0, 18, __pyx_L3_error)
2091  }
2092  case 2:
2093  if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementBoundaryElementsArray)) != 0)) kw_args--;
2094  else {
2095  __Pyx_RaiseArgtupleInvalid("setExteriorElementBoundaryTypes", 1, 5, 5, 2); __PYX_ERR(0, 18, __pyx_L3_error)
2096  }
2097  case 3:
2098  if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementMaterialTypes)) != 0)) kw_args--;
2099  else {
2100  __Pyx_RaiseArgtupleInvalid("setExteriorElementBoundaryTypes", 1, 5, 5, 3); __PYX_ERR(0, 18, __pyx_L3_error)
2101  }
2102  case 4:
2103  if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_exteriorElementBoundaryMaterialT)) != 0)) kw_args--;
2104  else {
2105  __Pyx_RaiseArgtupleInvalid("setExteriorElementBoundaryTypes", 1, 5, 5, 4); __PYX_ERR(0, 18, __pyx_L3_error)
2106  }
2107  }
2108  if (unlikely(kw_args > 0)) {
2109  if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "setExteriorElementBoundaryTypes") < 0)) __PYX_ERR(0, 18, __pyx_L3_error)
2110  }
2111  } else if (PyTuple_GET_SIZE(__pyx_args) != 5) {
2112  goto __pyx_L5_argtuple_error;
2113  } else {
2114  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
2115  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
2116  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
2117  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
2118  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
2119  }
2120  __pyx_v_nExteriorElementBoundaries_global = __Pyx_PyInt_As_int(values[0]); if (unlikely((__pyx_v_nExteriorElementBoundaries_global == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 18, __pyx_L3_error)
2121  __pyx_v_exteriorElementBoundariesArray = ((PyArrayObject *)values[1]);
2122  __pyx_v_elementBoundaryElementsArray = ((PyArrayObject *)values[2]);
2123  __pyx_v_elementMaterialTypes = ((PyArrayObject *)values[3]);
2124  __pyx_v_exteriorElementBoundaryMaterialTypes = ((PyArrayObject *)values[4]);
2125  }
2126  goto __pyx_L4_argument_unpacking_done;
2127  __pyx_L5_argtuple_error:;
2128  __Pyx_RaiseArgtupleInvalid("setExteriorElementBoundaryTypes", 1, 5, 5, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 18, __pyx_L3_error)
2129  __pyx_L3_error:;
2130  __Pyx_AddTraceback("subsurfaceTransportFunctions.setExteriorElementBoundaryTypes", __pyx_clineno, __pyx_lineno, __pyx_filename);
2131  __Pyx_RefNannyFinishContext();
2132  return NULL;
2133  __pyx_L4_argument_unpacking_done:;
2134  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_exteriorElementBoundariesArray), __pyx_ptype_5numpy_ndarray, 1, "exteriorElementBoundariesArray", 0))) __PYX_ERR(0, 19, __pyx_L1_error)
2135  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_elementBoundaryElementsArray), __pyx_ptype_5numpy_ndarray, 1, "elementBoundaryElementsArray", 0))) __PYX_ERR(0, 20, __pyx_L1_error)
2136  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_elementMaterialTypes), __pyx_ptype_5numpy_ndarray, 1, "elementMaterialTypes", 0))) __PYX_ERR(0, 21, __pyx_L1_error)
2137  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_exteriorElementBoundaryMaterialTypes), __pyx_ptype_5numpy_ndarray, 1, "exteriorElementBoundaryMaterialTypes", 0))) __PYX_ERR(0, 22, __pyx_L1_error)
2138  __pyx_r = __pyx_pf_28subsurfaceTransportFunctions_setExteriorElementBoundaryTypes(__pyx_self, __pyx_v_nExteriorElementBoundaries_global, __pyx_v_exteriorElementBoundariesArray, __pyx_v_elementBoundaryElementsArray, __pyx_v_elementMaterialTypes, __pyx_v_exteriorElementBoundaryMaterialTypes);
2139 
2140  /* function exit code */
2141  goto __pyx_L0;
2142  __pyx_L1_error:;
2143  __pyx_r = NULL;
2144  __pyx_L0:;
2145  __Pyx_RefNannyFinishContext();
2146  return __pyx_r;
2147 }
2148 
2149 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_setExteriorElementBoundaryTypes(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nExteriorElementBoundaries_global, PyArrayObject *__pyx_v_exteriorElementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryElementsArray, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_exteriorElementBoundaryMaterialTypes) {
2150  int __pyx_v_ebNE;
2151  int __pyx_v_ebN;
2152  int __pyx_v_eN;
2153  __Pyx_LocalBuf_ND __pyx_pybuffernd_elementBoundaryElementsArray;
2154  __Pyx_Buffer __pyx_pybuffer_elementBoundaryElementsArray;
2155  __Pyx_LocalBuf_ND __pyx_pybuffernd_elementMaterialTypes;
2156  __Pyx_Buffer __pyx_pybuffer_elementMaterialTypes;
2157  __Pyx_LocalBuf_ND __pyx_pybuffernd_exteriorElementBoundariesArray;
2158  __Pyx_Buffer __pyx_pybuffer_exteriorElementBoundariesArray;
2159  __Pyx_LocalBuf_ND __pyx_pybuffernd_exteriorElementBoundaryMaterialTypes;
2160  __Pyx_Buffer __pyx_pybuffer_exteriorElementBoundaryMaterialTypes;
2161  PyObject *__pyx_r = NULL;
2162  __Pyx_RefNannyDeclarations
2163  int __pyx_t_1;
2164  int __pyx_t_2;
2165  Py_ssize_t __pyx_t_3;
2166  int __pyx_t_4;
2167  Py_ssize_t __pyx_t_5;
2168  Py_ssize_t __pyx_t_6;
2169  Py_ssize_t __pyx_t_7;
2170  Py_ssize_t __pyx_t_8;
2171  __Pyx_RefNannySetupContext("setExteriorElementBoundaryTypes", 0);
2172  __pyx_pybuffer_exteriorElementBoundariesArray.pybuffer.buf = NULL;
2173  __pyx_pybuffer_exteriorElementBoundariesArray.refcount = 0;
2174  __pyx_pybuffernd_exteriorElementBoundariesArray.data = NULL;
2175  __pyx_pybuffernd_exteriorElementBoundariesArray.rcbuffer = &__pyx_pybuffer_exteriorElementBoundariesArray;
2176  __pyx_pybuffer_elementBoundaryElementsArray.pybuffer.buf = NULL;
2177  __pyx_pybuffer_elementBoundaryElementsArray.refcount = 0;
2178  __pyx_pybuffernd_elementBoundaryElementsArray.data = NULL;
2179  __pyx_pybuffernd_elementBoundaryElementsArray.rcbuffer = &__pyx_pybuffer_elementBoundaryElementsArray;
2180  __pyx_pybuffer_elementMaterialTypes.pybuffer.buf = NULL;
2181  __pyx_pybuffer_elementMaterialTypes.refcount = 0;
2182  __pyx_pybuffernd_elementMaterialTypes.data = NULL;
2183  __pyx_pybuffernd_elementMaterialTypes.rcbuffer = &__pyx_pybuffer_elementMaterialTypes;
2184  __pyx_pybuffer_exteriorElementBoundaryMaterialTypes.pybuffer.buf = NULL;
2185  __pyx_pybuffer_exteriorElementBoundaryMaterialTypes.refcount = 0;
2186  __pyx_pybuffernd_exteriorElementBoundaryMaterialTypes.data = NULL;
2187  __pyx_pybuffernd_exteriorElementBoundaryMaterialTypes.rcbuffer = &__pyx_pybuffer_exteriorElementBoundaryMaterialTypes;
2188  {
2189  __Pyx_BufFmt_StackElem __pyx_stack[1];
2190  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_exteriorElementBoundariesArray.rcbuffer->pybuffer, (PyObject*)__pyx_v_exteriorElementBoundariesArray, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_ITYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 18, __pyx_L1_error)
2191  }
2192  __pyx_pybuffernd_exteriorElementBoundariesArray.diminfo[0].strides = __pyx_pybuffernd_exteriorElementBoundariesArray.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_exteriorElementBoundariesArray.diminfo[0].shape = __pyx_pybuffernd_exteriorElementBoundariesArray.rcbuffer->pybuffer.shape[0];
2193  {
2194  __Pyx_BufFmt_StackElem __pyx_stack[1];
2195  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_elementBoundaryElementsArray.rcbuffer->pybuffer, (PyObject*)__pyx_v_elementBoundaryElementsArray, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_ITYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 18, __pyx_L1_error)
2196  }
2197  __pyx_pybuffernd_elementBoundaryElementsArray.diminfo[0].strides = __pyx_pybuffernd_elementBoundaryElementsArray.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_elementBoundaryElementsArray.diminfo[0].shape = __pyx_pybuffernd_elementBoundaryElementsArray.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_elementBoundaryElementsArray.diminfo[1].strides = __pyx_pybuffernd_elementBoundaryElementsArray.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_elementBoundaryElementsArray.diminfo[1].shape = __pyx_pybuffernd_elementBoundaryElementsArray.rcbuffer->pybuffer.shape[1];
2198  {
2199  __Pyx_BufFmt_StackElem __pyx_stack[1];
2200  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_elementMaterialTypes.rcbuffer->pybuffer, (PyObject*)__pyx_v_elementMaterialTypes, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_ITYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 18, __pyx_L1_error)
2201  }
2202  __pyx_pybuffernd_elementMaterialTypes.diminfo[0].strides = __pyx_pybuffernd_elementMaterialTypes.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_elementMaterialTypes.diminfo[0].shape = __pyx_pybuffernd_elementMaterialTypes.rcbuffer->pybuffer.shape[0];
2203  {
2204  __Pyx_BufFmt_StackElem __pyx_stack[1];
2205  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_exteriorElementBoundaryMaterialTypes.rcbuffer->pybuffer, (PyObject*)__pyx_v_exteriorElementBoundaryMaterialTypes, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_ITYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 18, __pyx_L1_error)
2206  }
2207  __pyx_pybuffernd_exteriorElementBoundaryMaterialTypes.diminfo[0].strides = __pyx_pybuffernd_exteriorElementBoundaryMaterialTypes.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_exteriorElementBoundaryMaterialTypes.diminfo[0].shape = __pyx_pybuffernd_exteriorElementBoundaryMaterialTypes.rcbuffer->pybuffer.shape[0];
2208 
2209  /* "subsurfaceTransportFunctions.pyx":24
2210  * numpy.ndarray[ITYPE_t,ndim=1] exteriorElementBoundaryMaterialTypes):
2211  * cdef int ebNE,ebN,eN
2212  * for ebNE in range(nExteriorElementBoundaries_global): # <<<<<<<<<<<<<<
2213  * ebN = exteriorElementBoundariesArray[ebNE]
2214  * eN = elementBoundaryElementsArray[ebN,0]
2215  */
2216  __pyx_t_1 = __pyx_v_nExteriorElementBoundaries_global;
2217  for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
2218  __pyx_v_ebNE = __pyx_t_2;
2219 
2220  /* "subsurfaceTransportFunctions.pyx":25
2221  * cdef int ebNE,ebN,eN
2222  * for ebNE in range(nExteriorElementBoundaries_global):
2223  * ebN = exteriorElementBoundariesArray[ebNE] # <<<<<<<<<<<<<<
2224  * eN = elementBoundaryElementsArray[ebN,0]
2225  * exteriorElementBoundaryMaterialTypes[ebNE] = elementMaterialTypes[eN]
2226  */
2227  __pyx_t_3 = __pyx_v_ebNE;
2228  __pyx_t_4 = -1;
2229  if (__pyx_t_3 < 0) {
2230  __pyx_t_3 += __pyx_pybuffernd_exteriorElementBoundariesArray.diminfo[0].shape;
2231  if (unlikely(__pyx_t_3 < 0)) __pyx_t_4 = 0;
2232  } else if (unlikely(__pyx_t_3 >= __pyx_pybuffernd_exteriorElementBoundariesArray.diminfo[0].shape)) __pyx_t_4 = 0;
2233  if (unlikely(__pyx_t_4 != -1)) {
2234  __Pyx_RaiseBufferIndexError(__pyx_t_4);
2235  __PYX_ERR(0, 25, __pyx_L1_error)
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2238 
2239  /* "subsurfaceTransportFunctions.pyx":26
2240  * for ebNE in range(nExteriorElementBoundaries_global):
2241  * ebN = exteriorElementBoundariesArray[ebNE]
2242  * eN = elementBoundaryElementsArray[ebN,0] # <<<<<<<<<<<<<<
2243  * exteriorElementBoundaryMaterialTypes[ebNE] = elementMaterialTypes[eN]
2244  *
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2262 
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2306  __Pyx_PyThreadState_declare
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2312  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_exteriorElementBoundaryMaterialTypes.rcbuffer->pybuffer);
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2318  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_elementBoundaryElementsArray.rcbuffer->pybuffer);
2319  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_elementMaterialTypes.rcbuffer->pybuffer);
2320  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_exteriorElementBoundariesArray.rcbuffer->pybuffer);
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2328 /* "subsurfaceTransportFunctions.pyx":29
2329  * exteriorElementBoundaryMaterialTypes[ebNE] = elementMaterialTypes[eN]
2330  *
2331  * def setElementBoundariesArray(int nElementBoundaries_global, # <<<<<<<<<<<<<<
2332  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
2333  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
2334  */
2335 
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2342  PyArrayObject *__pyx_v_elementMaterialTypes = 0;
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2355  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
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2389  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
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2490  * cdef int ebN,eN_left,eN_right
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2536 
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2570 
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2594  } else if (unlikely(__pyx_t_12 >= __pyx_pybuffernd_elementBoundaryMaterialTypes.diminfo[0].shape)) __pyx_t_5 = 0;
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2604 
2605  /* "subsurfaceTransportFunctions.pyx":39
2606  * elementBoundaryMaterialTypes[ebN,0] = elementMaterialTypes[eN_left]
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2608  * if eN_right >= 0: # <<<<<<<<<<<<<<
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2613  if (__pyx_t_14) {
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2615  /* "subsurfaceTransportFunctions.pyx":40
2616  * elementBoundaryMaterialTypes[ebN,1] = elementMaterialTypes[eN_left]
2617  * if eN_right >= 0:
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2623  __pyx_t_5 = -1;
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2629  __Pyx_RaiseBufferIndexError(__pyx_t_5);
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2633  __pyx_t_17 = 1;
2634  __pyx_t_5 = -1;
2635  if (__pyx_t_16 < 0) {
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2638  } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_elementBoundaryMaterialTypes.diminfo[0].shape)) __pyx_t_5 = 0;
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2642  } else if (unlikely(__pyx_t_17 >= __pyx_pybuffernd_elementBoundaryMaterialTypes.diminfo[1].shape)) __pyx_t_5 = 1;
2643  if (unlikely(__pyx_t_5 != -1)) {
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2648 
2649  /* "subsurfaceTransportFunctions.pyx":39
2650  * elementBoundaryMaterialTypes[ebN,0] = elementMaterialTypes[eN_left]
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2653  * elementBoundaryMaterialTypes[ebN,1] = elementMaterialTypes[eN_right]
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2655  */
2656  }
2657  }
2658 
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2660  * exteriorElementBoundaryMaterialTypes[ebNE] = elementMaterialTypes[eN]
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2663  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
2664  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
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2667  /* function exit code */
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2693  *
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2695  * def setScalarMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes, # <<<<<<<<<<<<<<
2696  * numpy.ndarray[DTYPE_t,ndim=2] q_vals,
2697  * dict material_functions):
2698  */
2699 
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2816 
2817  /* "subsurfaceTransportFunctions.pyx":51
2818  * """
2819  * cdef int eN,k,material
2820  * for eN in range(q_vals.shape[0]): # <<<<<<<<<<<<<<
2821  * material = elementMaterialTypes[eN]
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2827 
2828  /* "subsurfaceTransportFunctions.pyx":52
2829  * cdef int eN,k,material
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2848  * for eN in range(q_vals.shape[0]):
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2859  * material = elementMaterialTypes[eN]
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2862  *
2863  * def setVectorMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
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3190  if (unlikely(__pyx_kwds)) {
3191  Py_ssize_t kw_args;
3192  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
3193  switch (pos_args) {
3194  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
3195  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
3196  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
3197  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
3198  case 0: break;
3199  default: goto __pyx_L5_argtuple_error;
3200  }
3201  kw_args = PyDict_Size(__pyx_kwds);
3202  switch (pos_args) {
3203  case 0:
3204  if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementBoundariesArray)) != 0)) kw_args--;
3205  else goto __pyx_L5_argtuple_error;
3206  case 1:
3207  if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementBoundaryTypes)) != 0)) kw_args--;
3208  else {
3209  __Pyx_RaiseArgtupleInvalid("setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage", 1, 4, 4, 1); __PYX_ERR(0, 69, __pyx_L3_error)
3210  }
3211  case 2:
3212  if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebq_vals)) != 0)) kw_args--;
3213  else {
3214  __Pyx_RaiseArgtupleInvalid("setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage", 1, 4, 4, 2); __PYX_ERR(0, 69, __pyx_L3_error)
3215  }
3216  case 3:
3217  if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_material_functions)) != 0)) kw_args--;
3218  else {
3219  __Pyx_RaiseArgtupleInvalid("setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage", 1, 4, 4, 3); __PYX_ERR(0, 69, __pyx_L3_error)
3220  }
3221  }
3222  if (unlikely(kw_args > 0)) {
3223  if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage") < 0)) __PYX_ERR(0, 69, __pyx_L3_error)
3224  }
3225  } else if (PyTuple_GET_SIZE(__pyx_args) != 4) {
3226  goto __pyx_L5_argtuple_error;
3227  } else {
3228  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
3229  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
3230  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
3231  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
3232  }
3233  __pyx_v_elementBoundariesArray = ((PyArrayObject *)values[0]);
3234  __pyx_v_elementBoundaryTypes = ((PyArrayObject *)values[1]);
3235  __pyx_v_ebq_vals = ((PyArrayObject *)values[2]);
3236  __pyx_v_material_functions = ((PyObject*)values[3]);
3237  }
3238  goto __pyx_L4_argument_unpacking_done;
3239  __pyx_L5_argtuple_error:;
3240  __Pyx_RaiseArgtupleInvalid("setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage", 1, 4, 4, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 69, __pyx_L3_error)
3241  __pyx_L3_error:;
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3243  __Pyx_RefNannyFinishContext();
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3251 
3252  /* function exit code */
3253  goto __pyx_L0;
3254  __pyx_L1_error:;
3255  __pyx_r = NULL;
3256  __pyx_L0:;
3257  __Pyx_RefNannyFinishContext();
3258  return __pyx_r;
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3260 
3261 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_8setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_ebq_vals, PyObject *__pyx_v_material_functions) {
3262  int __pyx_v_eN;
3263  int __pyx_v_ebN;
3264  int __pyx_v_ebN_local;
3265  int __pyx_v_k;
3266  int __pyx_v_material_left;
3267  int __pyx_v_material_right;
3268  __Pyx_LocalBuf_ND __pyx_pybuffernd_ebq_vals;
3269  __Pyx_Buffer __pyx_pybuffer_ebq_vals;
3270  __Pyx_LocalBuf_ND __pyx_pybuffernd_elementBoundariesArray;
3271  __Pyx_Buffer __pyx_pybuffer_elementBoundariesArray;
3272  __Pyx_LocalBuf_ND __pyx_pybuffernd_elementBoundaryTypes;
3273  __Pyx_Buffer __pyx_pybuffer_elementBoundaryTypes;
3274  PyObject *__pyx_r = NULL;
3275  __Pyx_RefNannyDeclarations
3276  npy_intp __pyx_t_1;
3277  int __pyx_t_2;
3278  npy_intp __pyx_t_3;
3279  int __pyx_t_4;
3280  Py_ssize_t __pyx_t_5;
3281  Py_ssize_t __pyx_t_6;
3282  int __pyx_t_7;
3283  Py_ssize_t __pyx_t_8;
3284  Py_ssize_t __pyx_t_9;
3285  Py_ssize_t __pyx_t_10;
3286  Py_ssize_t __pyx_t_11;
3287  npy_intp __pyx_t_12;
3288  PyObject *__pyx_t_13 = NULL;
3289  PyObject *__pyx_t_14 = NULL;
3290  PyObject *__pyx_t_15 = NULL;
3291  __pyx_t_28subsurfaceTransportFunctions_DTYPE_t __pyx_t_16;
3292  Py_ssize_t __pyx_t_17;
3293  Py_ssize_t __pyx_t_18;
3294  Py_ssize_t __pyx_t_19;
3295  int __pyx_t_20;
3296  __Pyx_RefNannySetupContext("setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage", 0);
3297  __pyx_pybuffer_elementBoundariesArray.pybuffer.buf = NULL;
3298  __pyx_pybuffer_elementBoundariesArray.refcount = 0;
3299  __pyx_pybuffernd_elementBoundariesArray.data = NULL;
3300  __pyx_pybuffernd_elementBoundariesArray.rcbuffer = &__pyx_pybuffer_elementBoundariesArray;
3301  __pyx_pybuffer_elementBoundaryTypes.pybuffer.buf = NULL;
3302  __pyx_pybuffer_elementBoundaryTypes.refcount = 0;
3303  __pyx_pybuffernd_elementBoundaryTypes.data = NULL;
3304  __pyx_pybuffernd_elementBoundaryTypes.rcbuffer = &__pyx_pybuffer_elementBoundaryTypes;
3305  __pyx_pybuffer_ebq_vals.pybuffer.buf = NULL;
3306  __pyx_pybuffer_ebq_vals.refcount = 0;
3307  __pyx_pybuffernd_ebq_vals.data = NULL;
3308  __pyx_pybuffernd_ebq_vals.rcbuffer = &__pyx_pybuffer_ebq_vals;
3309  {
3310  __Pyx_BufFmt_StackElem __pyx_stack[1];
3311  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_elementBoundariesArray.rcbuffer->pybuffer, (PyObject*)__pyx_v_elementBoundariesArray, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_ITYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 69, __pyx_L1_error)
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3313  __pyx_pybuffernd_elementBoundariesArray.diminfo[0].strides = __pyx_pybuffernd_elementBoundariesArray.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_elementBoundariesArray.diminfo[0].shape = __pyx_pybuffernd_elementBoundariesArray.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_elementBoundariesArray.diminfo[1].strides = __pyx_pybuffernd_elementBoundariesArray.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_elementBoundariesArray.diminfo[1].shape = __pyx_pybuffernd_elementBoundariesArray.rcbuffer->pybuffer.shape[1];
3314  {
3315  __Pyx_BufFmt_StackElem __pyx_stack[1];
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3317  }
3318  __pyx_pybuffernd_elementBoundaryTypes.diminfo[0].strides = __pyx_pybuffernd_elementBoundaryTypes.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_elementBoundaryTypes.diminfo[0].shape = __pyx_pybuffernd_elementBoundaryTypes.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_elementBoundaryTypes.diminfo[1].strides = __pyx_pybuffernd_elementBoundaryTypes.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_elementBoundaryTypes.diminfo[1].shape = __pyx_pybuffernd_elementBoundaryTypes.rcbuffer->pybuffer.shape[1];
3319  {
3320  __Pyx_BufFmt_StackElem __pyx_stack[1];
3321  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_ebq_vals.rcbuffer->pybuffer, (PyObject*)__pyx_v_ebq_vals, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 3, 0, __pyx_stack) == -1)) __PYX_ERR(0, 69, __pyx_L1_error)
3322  }
3323  __pyx_pybuffernd_ebq_vals.diminfo[0].strides = __pyx_pybuffernd_ebq_vals.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_ebq_vals.diminfo[0].shape = __pyx_pybuffernd_ebq_vals.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_ebq_vals.diminfo[1].strides = __pyx_pybuffernd_ebq_vals.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_ebq_vals.diminfo[1].shape = __pyx_pybuffernd_ebq_vals.rcbuffer->pybuffer.shape[1]; __pyx_pybuffernd_ebq_vals.diminfo[2].strides = __pyx_pybuffernd_ebq_vals.rcbuffer->pybuffer.strides[2]; __pyx_pybuffernd_ebq_vals.diminfo[2].shape = __pyx_pybuffernd_ebq_vals.rcbuffer->pybuffer.shape[2];
3324 
3325  /* "subsurfaceTransportFunctions.pyx":82
3326  * cdef int eN,ebN,ebN_local,k,material_left,material_right
3327  *
3328  * for eN in range(ebq_vals.shape[0]): # <<<<<<<<<<<<<<
3329  * for ebN_local in range(ebq_vals.shape[1]):
3330  * ebN = elementBoundariesArray[eN,ebN_local]
3331  */
3332  __pyx_t_1 = (__pyx_v_ebq_vals->dimensions[0]);
3333  for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
3334  __pyx_v_eN = __pyx_t_2;
3335 
3336  /* "subsurfaceTransportFunctions.pyx":83
3337  *
3338  * for eN in range(ebq_vals.shape[0]):
3339  * for ebN_local in range(ebq_vals.shape[1]): # <<<<<<<<<<<<<<
3340  * ebN = elementBoundariesArray[eN,ebN_local]
3341  * material_left = elementBoundaryTypes[ebN,0]
3342  */
3343  __pyx_t_3 = (__pyx_v_ebq_vals->dimensions[1]);
3344  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
3345  __pyx_v_ebN_local = __pyx_t_4;
3346 
3347  /* "subsurfaceTransportFunctions.pyx":84
3348  * for eN in range(ebq_vals.shape[0]):
3349  * for ebN_local in range(ebq_vals.shape[1]):
3350  * ebN = elementBoundariesArray[eN,ebN_local] # <<<<<<<<<<<<<<
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3352  * material_right= elementBoundaryTypes[ebN,1]
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3354  __pyx_t_5 = __pyx_v_eN;
3355  __pyx_t_6 = __pyx_v_ebN_local;
3356  __pyx_t_7 = -1;
3357  if (__pyx_t_5 < 0) {
3358  __pyx_t_5 += __pyx_pybuffernd_elementBoundariesArray.diminfo[0].shape;
3359  if (unlikely(__pyx_t_5 < 0)) __pyx_t_7 = 0;
3360  } else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_elementBoundariesArray.diminfo[0].shape)) __pyx_t_7 = 0;
3361  if (__pyx_t_6 < 0) {
3362  __pyx_t_6 += __pyx_pybuffernd_elementBoundariesArray.diminfo[1].shape;
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3364  } else if (unlikely(__pyx_t_6 >= __pyx_pybuffernd_elementBoundariesArray.diminfo[1].shape)) __pyx_t_7 = 1;
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3366  __Pyx_RaiseBufferIndexError(__pyx_t_7);
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3370 
3371  /* "subsurfaceTransportFunctions.pyx":85
3372  * for ebN_local in range(ebq_vals.shape[1]):
3373  * ebN = elementBoundariesArray[eN,ebN_local]
3374  * material_left = elementBoundaryTypes[ebN,0] # <<<<<<<<<<<<<<
3375  * material_right= elementBoundaryTypes[ebN,1]
3376  * for k in range(ebq_vals.shape[2]):
3377  */
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3379  __pyx_t_9 = 0;
3380  __pyx_t_7 = -1;
3381  if (__pyx_t_8 < 0) {
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3394 
3395  /* "subsurfaceTransportFunctions.pyx":86
3396  * ebN = elementBoundariesArray[eN,ebN_local]
3397  * material_left = elementBoundaryTypes[ebN,0]
3398  * material_right= elementBoundaryTypes[ebN,1] # <<<<<<<<<<<<<<
3399  * for k in range(ebq_vals.shape[2]):
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3401  */
3402  __pyx_t_10 = __pyx_v_ebN;
3403  __pyx_t_11 = 1;
3404  __pyx_t_7 = -1;
3405  if (__pyx_t_10 < 0) {
3406  __pyx_t_10 += __pyx_pybuffernd_elementBoundaryTypes.diminfo[0].shape;
3407  if (unlikely(__pyx_t_10 < 0)) __pyx_t_7 = 0;
3408  } else if (unlikely(__pyx_t_10 >= __pyx_pybuffernd_elementBoundaryTypes.diminfo[0].shape)) __pyx_t_7 = 0;
3409  if (__pyx_t_11 < 0) {
3410  __pyx_t_11 += __pyx_pybuffernd_elementBoundaryTypes.diminfo[1].shape;
3411  if (unlikely(__pyx_t_11 < 0)) __pyx_t_7 = 1;
3412  } else if (unlikely(__pyx_t_11 >= __pyx_pybuffernd_elementBoundaryTypes.diminfo[1].shape)) __pyx_t_7 = 1;
3413  if (unlikely(__pyx_t_7 != -1)) {
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3420  * material_left = elementBoundaryTypes[ebN,0]
3421  * material_right= elementBoundaryTypes[ebN,1]
3422  * for k in range(ebq_vals.shape[2]): # <<<<<<<<<<<<<<
3423  * ebq_vals[eN,ebN_local,k] = 0.5*(material_functions[material_left]+
3424  * material_functions[material_right])
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3427  for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_12; __pyx_t_7+=1) {
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3429 
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3431  * material_right= elementBoundaryTypes[ebN,1]
3432  * for k in range(ebq_vals.shape[2]):
3433  * ebq_vals[eN,ebN_local,k] = 0.5*(material_functions[material_left]+ # <<<<<<<<<<<<<<
3434  * material_functions[material_right])
3435  *
3436  */
3437  if (unlikely(__pyx_v_material_functions == Py_None)) {
3438  PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
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3447  /* "subsurfaceTransportFunctions.pyx":89
3448  * for k in range(ebq_vals.shape[2]):
3449  * ebq_vals[eN,ebN_local,k] = 0.5*(material_functions[material_left]+
3450  * material_functions[material_right]) # <<<<<<<<<<<<<<
3451  *
3452  * def setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd,
3453  */
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3465  * material_right= elementBoundaryTypes[ebN,1]
3466  * for k in range(ebq_vals.shape[2]):
3467  * ebq_vals[eN,ebN_local,k] = 0.5*(material_functions[material_left]+ # <<<<<<<<<<<<<<
3468  * material_functions[material_right])
3469  *
3470  */
3471  __pyx_t_13 = PyNumber_Add(__pyx_t_14, __pyx_t_15); if (unlikely(!__pyx_t_13)) __PYX_ERR(0, 88, __pyx_L1_error)
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3473  __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
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3541 /* "subsurfaceTransportFunctions.pyx":91
3542  * material_functions[material_right])
3543  *
3544  * def setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
3545  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
3546  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
3547  */
3548 
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4067  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
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4070 
4071 /* Python wrapper */
4072 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_13setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
4073 static char __pyx_doc_28subsurfaceTransportFunctions_12setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage[] = "\n loop over quadrature array and evaluate function f = 0.5(f^L_j+f^R_k) assuming element on left \n is material j and element on right is material k\n\n likely little improvement right now without correct typing of material_functions\n \n ";
4074 static PyMethodDef __pyx_mdef_28subsurfaceTransportFunctions_13setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage = {"setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage", (PyCFunction)__pyx_pw_28subsurfaceTransportFunctions_13setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage, METH_VARARGS|METH_KEYWORDS, __pyx_doc_28subsurfaceTransportFunctions_12setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage};
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4085  PyObject* values[4] = {0,0,0,0};
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4089  switch (pos_args) {
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4093  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
4094  case 0: break;
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4148  /* function exit code */
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4215  * cdef int ebN,material_left,material_right
4216  *
4217  * for ebN in range(ebq_global_vals.shape[0]): # <<<<<<<<<<<<<<
4218  * material_left = elementBoundaryTypes[ebN,0]
4219  * material_right= elementBoundaryTypes[ebN,1]
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4226  *
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4229  * material_right= elementBoundaryTypes[ebN,1]
4230  * for k in range(ebq_global_vals.shape[1]):
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4248 
4249  /* "subsurfaceTransportFunctions.pyx":133
4250  * for ebN in range(ebq_global_vals.shape[0]):
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4302  * for k in range(ebq_global_vals.shape[1]):
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4353  /* "subsurfaceTransportFunctions.pyx":118
4354  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
4355  *
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4389 /* "subsurfaceTransportFunctions.pyx":139
4390  *
4391  *
4392  * def setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
4393  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
4394  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
4395  */
4396 
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4399 static char __pyx_doc_28subsurfaceTransportFunctions_14setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage[] = "\n loop over quadrature array and evaluate function \ten f_{mn} = f^L_{j,mn}f^R_{k,mn}/(f^L_{j,mn}+f^R_{k,mn})\n assuming element on left is material j and element on right is material k\n\n likely little improvement right now without correct typing of material_functions\n \n ";
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4561  * cdef double numer,denom
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4620  * material_left = elementBoundaryTypes[ebN,0]
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4630  /* "subsurfaceTransportFunctions.pyx":158
4631  * material_right= elementBoundaryTypes[ebN,1]
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4641  /* "subsurfaceTransportFunctions.pyx":159
4642  * for k in range(ebq_global_vals.shape[1]):
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4645  * numer = 2.0*material_functions[material_left][I,J]*material_functions[material_right][I,J]
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4653  * for I in range(nd):
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5571  PyObject* values[6] = {0,0,0,0,0,0};
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5573  Py_ssize_t kw_args;
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6104  * material_functions[material_right](x[eN,ebN_local,k],t))
6105  *
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6107  * double t,
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6109  */
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7078  Py_ssize_t __pyx_t_6;
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8176  *
8177  *
8178  * def evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
8179  * double t,
8180  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
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8218  *
8219  * ##################################################
8220  * def RE_NCP1_evaluateElementCoefficients_Linear(double rho, # <<<<<<<<<<<<<<
8221  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
8222  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
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8224 
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8962  __Pyx_RaiseBufferIndexError(__pyx_t_23);
8963  __PYX_ERR(0, 343, __pyx_L1_error)
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8966  }
8967 
8968  /* "subsurfaceTransportFunctions.pyx":344
8969  * for ii in range(nnz):
8970  * a_neig[ii] = a_eN[ii]
8971  * if eN_neighbor >= 0: # <<<<<<<<<<<<<<
8972  * matID_neig = elementMaterialTypes[eN_neighbor]
8973  * for ii in range(nnz):
8974  */
8975  __pyx_t_25 = ((__pyx_v_eN_neighbor >= 0) != 0);
8976  if (__pyx_t_25) {
8977 
8978  /* "subsurfaceTransportFunctions.pyx":345
8979  * a_neig[ii] = a_eN[ii]
8980  * if eN_neighbor >= 0:
8981  * matID_neig = elementMaterialTypes[eN_neighbor] # <<<<<<<<<<<<<<
8982  * for ii in range(nnz):
8983  * a_neig[ii] = rho*KWs[matID_neig,ii]
8984  */
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8986  __pyx_t_17 = -1;
8987  if (__pyx_t_26 < 0) {
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8989  if (unlikely(__pyx_t_26 < 0)) __pyx_t_17 = 0;
8990  } else if (unlikely(__pyx_t_26 >= __pyx_pybuffernd_elementMaterialTypes.diminfo[0].shape)) __pyx_t_17 = 0;
8991  if (unlikely(__pyx_t_17 != -1)) {
8992  __Pyx_RaiseBufferIndexError(__pyx_t_17);
8993  __PYX_ERR(0, 345, __pyx_L1_error)
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8996 
8997  /* "subsurfaceTransportFunctions.pyx":346
8998  * if eN_neighbor >= 0:
8999  * matID_neig = elementMaterialTypes[eN_neighbor]
9000  * for ii in range(nnz): # <<<<<<<<<<<<<<
9001  * a_neig[ii] = rho*KWs[matID_neig,ii]
9002  * for ii in range(nnz):
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9005  for (__pyx_t_21 = 0; __pyx_t_21 < __pyx_t_17; __pyx_t_21+=1) {
9006  __pyx_v_ii = __pyx_t_21;
9007 
9008  /* "subsurfaceTransportFunctions.pyx":347
9009  * matID_neig = elementMaterialTypes[eN_neighbor]
9010  * for ii in range(nnz):
9011  * a_neig[ii] = rho*KWs[matID_neig,ii] # <<<<<<<<<<<<<<
9012  * for ii in range(nnz):
9013  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20)
9014  */
9015  __pyx_t_27 = __pyx_v_matID_neig;
9016  __pyx_t_28 = __pyx_v_ii;
9017  __pyx_t_23 = -1;
9018  if (__pyx_t_27 < 0) {
9019  __pyx_t_27 += __pyx_pybuffernd_KWs.diminfo[0].shape;
9020  if (unlikely(__pyx_t_27 < 0)) __pyx_t_23 = 0;
9021  } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_KWs.diminfo[0].shape)) __pyx_t_23 = 0;
9022  if (__pyx_t_28 < 0) {
9023  __pyx_t_28 += __pyx_pybuffernd_KWs.diminfo[1].shape;
9024  if (unlikely(__pyx_t_28 < 0)) __pyx_t_23 = 1;
9025  } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_KWs.diminfo[1].shape)) __pyx_t_23 = 1;
9026  if (unlikely(__pyx_t_23 != -1)) {
9027  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9028  __PYX_ERR(0, 347, __pyx_L1_error)
9029  }
9030  __pyx_t_29 = __pyx_v_ii;
9031  __pyx_t_23 = -1;
9032  if (__pyx_t_29 < 0) {
9033  __pyx_t_29 += __pyx_pybuffernd_a_neig.diminfo[0].shape;
9034  if (unlikely(__pyx_t_29 < 0)) __pyx_t_23 = 0;
9035  } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_a_neig.diminfo[0].shape)) __pyx_t_23 = 0;
9036  if (unlikely(__pyx_t_23 != -1)) {
9037  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9038  __PYX_ERR(0, 347, __pyx_L1_error)
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9041  }
9042 
9043  /* "subsurfaceTransportFunctions.pyx":344
9044  * for ii in range(nnz):
9045  * a_neig[ii] = a_eN[ii]
9046  * if eN_neighbor >= 0: # <<<<<<<<<<<<<<
9047  * matID_neig = elementMaterialTypes[eN_neighbor]
9048  * for ii in range(nnz):
9049  */
9050  }
9051 
9052  /* "subsurfaceTransportFunctions.pyx":348
9053  * for ii in range(nnz):
9054  * a_neig[ii] = rho*KWs[matID_neig,ii]
9055  * for ii in range(nnz): # <<<<<<<<<<<<<<
9056  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20)
9057  * q_alin[eN,ebN,ii] = a_avg[ii]
9058  */
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9060  for (__pyx_t_21 = 0; __pyx_t_21 < __pyx_t_17; __pyx_t_21+=1) {
9061  __pyx_v_ii = __pyx_t_21;
9062 
9063  /* "subsurfaceTransportFunctions.pyx":349
9064  * a_neig[ii] = rho*KWs[matID_neig,ii]
9065  * for ii in range(nnz):
9066  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20) # <<<<<<<<<<<<<<
9067  * q_alin[eN,ebN,ii] = a_avg[ii]
9068  * for I in range(nSpace):
9069  */
9070  __pyx_t_30 = __pyx_v_ii;
9071  __pyx_t_23 = -1;
9072  if (__pyx_t_30 < 0) {
9073  __pyx_t_30 += __pyx_pybuffernd_a_eN.diminfo[0].shape;
9074  if (unlikely(__pyx_t_30 < 0)) __pyx_t_23 = 0;
9075  } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_a_eN.diminfo[0].shape)) __pyx_t_23 = 0;
9076  if (unlikely(__pyx_t_23 != -1)) {
9077  __Pyx_RaiseBufferIndexError(__pyx_t_23);
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9080  __pyx_t_31 = __pyx_v_ii;
9081  __pyx_t_23 = -1;
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9083  __pyx_t_31 += __pyx_pybuffernd_a_neig.diminfo[0].shape;
9084  if (unlikely(__pyx_t_31 < 0)) __pyx_t_23 = 0;
9085  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_a_neig.diminfo[0].shape)) __pyx_t_23 = 0;
9086  if (unlikely(__pyx_t_23 != -1)) {
9087  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9088  __PYX_ERR(0, 349, __pyx_L1_error)
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9091  __pyx_t_33 = __pyx_v_ii;
9092  __pyx_t_23 = -1;
9093  if (__pyx_t_33 < 0) {
9094  __pyx_t_33 += __pyx_pybuffernd_a_eN.diminfo[0].shape;
9095  if (unlikely(__pyx_t_33 < 0)) __pyx_t_23 = 0;
9096  } else if (unlikely(__pyx_t_33 >= __pyx_pybuffernd_a_eN.diminfo[0].shape)) __pyx_t_23 = 0;
9097  if (unlikely(__pyx_t_23 != -1)) {
9098  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9099  __PYX_ERR(0, 349, __pyx_L1_error)
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9101  __pyx_t_34 = __pyx_v_ii;
9102  __pyx_t_23 = -1;
9103  if (__pyx_t_34 < 0) {
9104  __pyx_t_34 += __pyx_pybuffernd_a_neig.diminfo[0].shape;
9105  if (unlikely(__pyx_t_34 < 0)) __pyx_t_23 = 0;
9106  } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_a_neig.diminfo[0].shape)) __pyx_t_23 = 0;
9107  if (unlikely(__pyx_t_23 != -1)) {
9108  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9109  __PYX_ERR(0, 349, __pyx_L1_error)
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9112  if (unlikely(__pyx_t_35 == 0)) {
9113  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
9114  __PYX_ERR(0, 349, __pyx_L1_error)
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9117  __pyx_t_23 = -1;
9118  if (__pyx_t_36 < 0) {
9119  __pyx_t_36 += __pyx_pybuffernd_a_avg.diminfo[0].shape;
9120  if (unlikely(__pyx_t_36 < 0)) __pyx_t_23 = 0;
9121  } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_a_avg.diminfo[0].shape)) __pyx_t_23 = 0;
9122  if (unlikely(__pyx_t_23 != -1)) {
9123  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9124  __PYX_ERR(0, 349, __pyx_L1_error)
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9127 
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9129  * for ii in range(nnz):
9130  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20)
9131  * q_alin[eN,ebN,ii] = a_avg[ii] # <<<<<<<<<<<<<<
9132  * for I in range(nSpace):
9133  * q_flin[eN,ebN,I] = 0.0
9134  */
9135  __pyx_t_37 = __pyx_v_ii;
9136  __pyx_t_23 = -1;
9137  if (__pyx_t_37 < 0) {
9138  __pyx_t_37 += __pyx_pybuffernd_a_avg.diminfo[0].shape;
9139  if (unlikely(__pyx_t_37 < 0)) __pyx_t_23 = 0;
9140  } else if (unlikely(__pyx_t_37 >= __pyx_pybuffernd_a_avg.diminfo[0].shape)) __pyx_t_23 = 0;
9141  if (unlikely(__pyx_t_23 != -1)) {
9142  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9143  __PYX_ERR(0, 350, __pyx_L1_error)
9144  }
9145  __pyx_t_38 = __pyx_v_eN;
9146  __pyx_t_39 = __pyx_v_ebN;
9147  __pyx_t_40 = __pyx_v_ii;
9148  __pyx_t_23 = -1;
9149  if (__pyx_t_38 < 0) {
9150  __pyx_t_38 += __pyx_pybuffernd_q_alin.diminfo[0].shape;
9151  if (unlikely(__pyx_t_38 < 0)) __pyx_t_23 = 0;
9152  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_q_alin.diminfo[0].shape)) __pyx_t_23 = 0;
9153  if (__pyx_t_39 < 0) {
9154  __pyx_t_39 += __pyx_pybuffernd_q_alin.diminfo[1].shape;
9155  if (unlikely(__pyx_t_39 < 0)) __pyx_t_23 = 1;
9156  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_q_alin.diminfo[1].shape)) __pyx_t_23 = 1;
9157  if (__pyx_t_40 < 0) {
9158  __pyx_t_40 += __pyx_pybuffernd_q_alin.diminfo[2].shape;
9159  if (unlikely(__pyx_t_40 < 0)) __pyx_t_23 = 2;
9160  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_q_alin.diminfo[2].shape)) __pyx_t_23 = 2;
9161  if (unlikely(__pyx_t_23 != -1)) {
9162  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9163  __PYX_ERR(0, 350, __pyx_L1_error)
9164  }
9165  *__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_alin.rcbuffer->pybuffer.buf, __pyx_t_38, __pyx_pybuffernd_q_alin.diminfo[0].strides, __pyx_t_39, __pyx_pybuffernd_q_alin.diminfo[1].strides, __pyx_t_40, __pyx_pybuffernd_q_alin.diminfo[2].strides) = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_avg.rcbuffer->pybuffer.buf, __pyx_t_37, __pyx_pybuffernd_a_avg.diminfo[0].strides));
9166  }
9167 
9168  /* "subsurfaceTransportFunctions.pyx":351
9169  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20)
9170  * q_alin[eN,ebN,ii] = a_avg[ii]
9171  * for I in range(nSpace): # <<<<<<<<<<<<<<
9172  * q_flin[eN,ebN,I] = 0.0
9173  * for ii in range(rowptr[I],rowptr[I+1]):
9174  */
9175  __pyx_t_17 = __pyx_v_nSpace;
9176  for (__pyx_t_21 = 0; __pyx_t_21 < __pyx_t_17; __pyx_t_21+=1) {
9177  __pyx_v_I = __pyx_t_21;
9178 
9179  /* "subsurfaceTransportFunctions.pyx":352
9180  * q_alin[eN,ebN,ii] = a_avg[ii]
9181  * for I in range(nSpace):
9182  * q_flin[eN,ebN,I] = 0.0 # <<<<<<<<<<<<<<
9183  * for ii in range(rowptr[I],rowptr[I+1]):
9184  * q_flin[eN,ebN,I] += rho*a_avg[ii]*gravity[colind[ii]]
9185  */
9186  __pyx_t_41 = __pyx_v_eN;
9187  __pyx_t_42 = __pyx_v_ebN;
9188  __pyx_t_43 = __pyx_v_I;
9189  __pyx_t_23 = -1;
9190  if (__pyx_t_41 < 0) {
9191  __pyx_t_41 += __pyx_pybuffernd_q_flin.diminfo[0].shape;
9192  if (unlikely(__pyx_t_41 < 0)) __pyx_t_23 = 0;
9193  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_q_flin.diminfo[0].shape)) __pyx_t_23 = 0;
9194  if (__pyx_t_42 < 0) {
9195  __pyx_t_42 += __pyx_pybuffernd_q_flin.diminfo[1].shape;
9196  if (unlikely(__pyx_t_42 < 0)) __pyx_t_23 = 1;
9197  } else if (unlikely(__pyx_t_42 >= __pyx_pybuffernd_q_flin.diminfo[1].shape)) __pyx_t_23 = 1;
9198  if (__pyx_t_43 < 0) {
9199  __pyx_t_43 += __pyx_pybuffernd_q_flin.diminfo[2].shape;
9200  if (unlikely(__pyx_t_43 < 0)) __pyx_t_23 = 2;
9201  } else if (unlikely(__pyx_t_43 >= __pyx_pybuffernd_q_flin.diminfo[2].shape)) __pyx_t_23 = 2;
9202  if (unlikely(__pyx_t_23 != -1)) {
9203  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9204  __PYX_ERR(0, 352, __pyx_L1_error)
9205  }
9206  *__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_flin.rcbuffer->pybuffer.buf, __pyx_t_41, __pyx_pybuffernd_q_flin.diminfo[0].strides, __pyx_t_42, __pyx_pybuffernd_q_flin.diminfo[1].strides, __pyx_t_43, __pyx_pybuffernd_q_flin.diminfo[2].strides) = 0.0;
9207 
9208  /* "subsurfaceTransportFunctions.pyx":353
9209  * for I in range(nSpace):
9210  * q_flin[eN,ebN,I] = 0.0
9211  * for ii in range(rowptr[I],rowptr[I+1]): # <<<<<<<<<<<<<<
9212  * q_flin[eN,ebN,I] += rho*a_avg[ii]*gravity[colind[ii]]
9213  * #ebN
9214  */
9215  __pyx_t_44 = (__pyx_v_I + 1);
9216  __pyx_t_23 = -1;
9217  if (__pyx_t_44 < 0) {
9218  __pyx_t_44 += __pyx_pybuffernd_rowptr.diminfo[0].shape;
9219  if (unlikely(__pyx_t_44 < 0)) __pyx_t_23 = 0;
9220  } else if (unlikely(__pyx_t_44 >= __pyx_pybuffernd_rowptr.diminfo[0].shape)) __pyx_t_23 = 0;
9221  if (unlikely(__pyx_t_23 != -1)) {
9222  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9223  __PYX_ERR(0, 353, __pyx_L1_error)
9224  }
9225  __pyx_t_45 = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_rowptr.rcbuffer->pybuffer.buf, __pyx_t_44, __pyx_pybuffernd_rowptr.diminfo[0].strides));
9226  __pyx_t_46 = __pyx_v_I;
9227  __pyx_t_23 = -1;
9228  if (__pyx_t_46 < 0) {
9229  __pyx_t_46 += __pyx_pybuffernd_rowptr.diminfo[0].shape;
9230  if (unlikely(__pyx_t_46 < 0)) __pyx_t_23 = 0;
9231  } else if (unlikely(__pyx_t_46 >= __pyx_pybuffernd_rowptr.diminfo[0].shape)) __pyx_t_23 = 0;
9232  if (unlikely(__pyx_t_23 != -1)) {
9233  __Pyx_RaiseBufferIndexError(__pyx_t_23);
9234  __PYX_ERR(0, 353, __pyx_L1_error)
9235  }
9236  for (__pyx_t_23 = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_rowptr.rcbuffer->pybuffer.buf, __pyx_t_46, __pyx_pybuffernd_rowptr.diminfo[0].strides)); __pyx_t_23 < __pyx_t_45; __pyx_t_23+=1) {
9237  __pyx_v_ii = __pyx_t_23;
9238 
9239  /* "subsurfaceTransportFunctions.pyx":354
9240  * q_flin[eN,ebN,I] = 0.0
9241  * for ii in range(rowptr[I],rowptr[I+1]):
9242  * q_flin[eN,ebN,I] += rho*a_avg[ii]*gravity[colind[ii]] # <<<<<<<<<<<<<<
9243  * #ebN
9244  * #eN
9245  */
9246  __pyx_t_47 = __pyx_v_ii;
9247  __pyx_t_48 = -1;
9248  if (__pyx_t_47 < 0) {
9249  __pyx_t_47 += __pyx_pybuffernd_a_avg.diminfo[0].shape;
9250  if (unlikely(__pyx_t_47 < 0)) __pyx_t_48 = 0;
9251  } else if (unlikely(__pyx_t_47 >= __pyx_pybuffernd_a_avg.diminfo[0].shape)) __pyx_t_48 = 0;
9252  if (unlikely(__pyx_t_48 != -1)) {
9253  __Pyx_RaiseBufferIndexError(__pyx_t_48);
9254  __PYX_ERR(0, 354, __pyx_L1_error)
9255  }
9256  __pyx_t_49 = __pyx_v_ii;
9257  __pyx_t_48 = -1;
9258  if (__pyx_t_49 < 0) {
9259  __pyx_t_49 += __pyx_pybuffernd_colind.diminfo[0].shape;
9260  if (unlikely(__pyx_t_49 < 0)) __pyx_t_48 = 0;
9261  } else if (unlikely(__pyx_t_49 >= __pyx_pybuffernd_colind.diminfo[0].shape)) __pyx_t_48 = 0;
9262  if (unlikely(__pyx_t_48 != -1)) {
9263  __Pyx_RaiseBufferIndexError(__pyx_t_48);
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9302  /* "subsurfaceTransportFunctions.pyx":301
9303  *
9304  * ##################################################
9305  * def RE_NCP1_evaluateElementCoefficients_Linear(double rho, # <<<<<<<<<<<<<<
9306  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
9307  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
9308  */
9309 
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9360  *
9361  *
9362  * def RE_NCP1_evaluateElementCoefficients_VGM(double rho, # <<<<<<<<<<<<<<
9363  * double beta,
9364  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
9365  */
9366 
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9892  __Pyx_BufFmt_StackElem __pyx_stack[1];
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9897  __Pyx_BufFmt_StackElem __pyx_stack[1];
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9902  __Pyx_BufFmt_StackElem __pyx_stack[1];
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9907  __Pyx_BufFmt_StackElem __pyx_stack[1];
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9912  __Pyx_BufFmt_StackElem __pyx_stack[1];
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9917  __Pyx_BufFmt_StackElem __pyx_stack[1];
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9921  {
9922  __Pyx_BufFmt_StackElem __pyx_stack[1];
9923  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_q_dkr.rcbuffer->pybuffer, (PyObject*)__pyx_v_q_dkr, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 359, __pyx_L1_error)
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9925  __pyx_pybuffernd_q_dkr.diminfo[0].strides = __pyx_pybuffernd_q_dkr.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_q_dkr.diminfo[0].shape = __pyx_pybuffernd_q_dkr.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_q_dkr.diminfo[1].strides = __pyx_pybuffernd_q_dkr.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_q_dkr.diminfo[1].shape = __pyx_pybuffernd_q_dkr.rcbuffer->pybuffer.shape[1];
9926  {
9927  __Pyx_BufFmt_StackElem __pyx_stack[1];
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9929  }
9930  __pyx_pybuffernd_q_kr_up.diminfo[0].strides = __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_q_kr_up.diminfo[0].shape = __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_q_kr_up.diminfo[1].strides = __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_q_kr_up.diminfo[1].shape = __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.shape[1];
9931 
9932  /* "subsurfaceTransportFunctions.pyx":399
9933  * """
9934  * #check some sizes
9935  * for q in [q_u,q_mass,q_r,q_kr,q_dkr]: # <<<<<<<<<<<<<<
9936  * assert q.shape[1] == nSpace+1
9937  * assert nDOF_trial_element == nSpace + 1
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9942  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_u));
9943  PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)__pyx_v_q_u));
9944  __Pyx_INCREF(((PyObject *)__pyx_v_q_mass));
9945  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_mass));
9946  PyTuple_SET_ITEM(__pyx_t_1, 1, ((PyObject *)__pyx_v_q_mass));
9947  __Pyx_INCREF(((PyObject *)__pyx_v_q_r));
9948  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_r));
9949  PyTuple_SET_ITEM(__pyx_t_1, 2, ((PyObject *)__pyx_v_q_r));
9950  __Pyx_INCREF(((PyObject *)__pyx_v_q_kr));
9951  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_kr));
9952  PyTuple_SET_ITEM(__pyx_t_1, 3, ((PyObject *)__pyx_v_q_kr));
9953  __Pyx_INCREF(((PyObject *)__pyx_v_q_dkr));
9954  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_dkr));
9955  PyTuple_SET_ITEM(__pyx_t_1, 4, ((PyObject *)__pyx_v_q_dkr));
9956  __pyx_t_2 = __pyx_t_1; __Pyx_INCREF(__pyx_t_2); __pyx_t_3 = 0;
9957  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
9958  for (;;) {
9959  if (__pyx_t_3 >= 5) break;
9960  #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
9961  __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_1); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(0, 399, __pyx_L1_error)
9962  #else
9963  __pyx_t_1 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 399, __pyx_L1_error)
9964  __Pyx_GOTREF(__pyx_t_1);
9965  #endif
9966  __Pyx_XDECREF_SET(__pyx_v_q, __pyx_t_1);
9967  __pyx_t_1 = 0;
9968 
9969  /* "subsurfaceTransportFunctions.pyx":400
9970  * #check some sizes
9971  * for q in [q_u,q_mass,q_r,q_kr,q_dkr]:
9972  * assert q.shape[1] == nSpace+1 # <<<<<<<<<<<<<<
9973  * assert nDOF_trial_element == nSpace + 1
9974  * #temporaries
9975  */
9976  #ifndef CYTHON_WITHOUT_ASSERTIONS
9977  if (unlikely(!Py_OptimizeFlag)) {
9978  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_q, __pyx_n_s_shape); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 400, __pyx_L1_error)
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9981  __Pyx_GOTREF(__pyx_t_4);
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9984  __Pyx_GOTREF(__pyx_t_1);
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9987  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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9989  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
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9992  __PYX_ERR(0, 400, __pyx_L1_error)
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9995  #endif
9996 
9997  /* "subsurfaceTransportFunctions.pyx":399
9998  * """
9999  * #check some sizes
10000  * for q in [q_u,q_mass,q_r,q_kr,q_dkr]: # <<<<<<<<<<<<<<
10001  * assert q.shape[1] == nSpace+1
10002  * assert nDOF_trial_element == nSpace + 1
10003  */
10004  }
10005  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10006 
10007  /* "subsurfaceTransportFunctions.pyx":401
10008  * for q in [q_u,q_mass,q_r,q_kr,q_dkr]:
10009  * assert q.shape[1] == nSpace+1
10010  * assert nDOF_trial_element == nSpace + 1 # <<<<<<<<<<<<<<
10011  * #temporaries
10012  * cdef double psiC,pcBar,pcBar_n,pcBar_nM1,pcBar_nM2,onePlus_pcBar_n,sBar,sqrt_sBar,DsBar_DpsiC,thetaW,DthetaW_DpsiC
10013  */
10014  #ifndef CYTHON_WITHOUT_ASSERTIONS
10015  if (unlikely(!Py_OptimizeFlag)) {
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10022 
10023  /* "subsurfaceTransportFunctions.pyx":404
10024  * #temporaries
10025  * cdef double psiC,pcBar,pcBar_n,pcBar_nM1,pcBar_nM2,onePlus_pcBar_n,sBar,sqrt_sBar,DsBar_DpsiC,thetaW,DthetaW_DpsiC
10026  * cdef double vBar,vBar2,DvBar_DpsiC,KWr,DKWr_DpsiC,rho2=rho*rho,thetaS,rhom,drhom,m # <<<<<<<<<<<<<<
10027  *
10028  * cdef double u_j,u_eN,u_neig,kr_eN,kr_neig,phi_eN,phi_neig
10029  */
10030  __pyx_v_rho2 = (__pyx_v_rho * __pyx_v_rho);
10031 
10032  /* "subsurfaceTransportFunctions.pyx":409
10033  * cdef int eN,eN_neighbor,ebN,ii,I,j,matID
10034  * #for averaging/integration weights
10035  * cdef double nAvgWeight = 1.0/(nSpace+1.) # <<<<<<<<<<<<<<
10036  *
10037  * #loop through and evaluate
10038  */
10039  __pyx_t_7 = (__pyx_v_nSpace + 1.);
10040  if (unlikely(__pyx_t_7 == 0)) {
10041  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
10042  __PYX_ERR(0, 409, __pyx_L1_error)
10043  }
10044  __pyx_v_nAvgWeight = (1.0 / __pyx_t_7);
10045 
10046  /* "subsurfaceTransportFunctions.pyx":412
10047  *
10048  * #loop through and evaluate
10049  * for eN in range(nElements_global): # <<<<<<<<<<<<<<
10050  * matID = elementMaterialTypes[eN]
10051  * for j in range(nDOF_trial_element):
10052  */
10053  __pyx_t_8 = __pyx_v_nElements_global;
10054  for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
10055  __pyx_v_eN = __pyx_t_9;
10056 
10057  /* "subsurfaceTransportFunctions.pyx":413
10058  * #loop through and evaluate
10059  * for eN in range(nElements_global):
10060  * matID = elementMaterialTypes[eN] # <<<<<<<<<<<<<<
10061  * for j in range(nDOF_trial_element):
10062  * u_j = u_dof[u_l2g[eN,j]]
10063  */
10064  __pyx_t_10 = __pyx_v_eN;
10065  __pyx_t_11 = -1;
10066  if (__pyx_t_10 < 0) {
10067  __pyx_t_10 += __pyx_pybuffernd_elementMaterialTypes.diminfo[0].shape;
10068  if (unlikely(__pyx_t_10 < 0)) __pyx_t_11 = 0;
10069  } else if (unlikely(__pyx_t_10 >= __pyx_pybuffernd_elementMaterialTypes.diminfo[0].shape)) __pyx_t_11 = 0;
10070  if (unlikely(__pyx_t_11 != -1)) {
10071  __Pyx_RaiseBufferIndexError(__pyx_t_11);
10072  __PYX_ERR(0, 413, __pyx_L1_error)
10073  }
10074  __pyx_v_matID = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_elementMaterialTypes.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_elementMaterialTypes.diminfo[0].strides));
10075 
10076  /* "subsurfaceTransportFunctions.pyx":414
10077  * for eN in range(nElements_global):
10078  * matID = elementMaterialTypes[eN]
10079  * for j in range(nDOF_trial_element): # <<<<<<<<<<<<<<
10080  * u_j = u_dof[u_l2g[eN,j]]
10081  * q_u[eN,j] = u_j
10082  */
10083  __pyx_t_11 = __pyx_v_nDOF_trial_element;
10084  for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; __pyx_t_12+=1) {
10085  __pyx_v_j = __pyx_t_12;
10086 
10087  /* "subsurfaceTransportFunctions.pyx":415
10088  * matID = elementMaterialTypes[eN]
10089  * for j in range(nDOF_trial_element):
10090  * u_j = u_dof[u_l2g[eN,j]] # <<<<<<<<<<<<<<
10091  * q_u[eN,j] = u_j
10092  *
10093  */
10094  __pyx_t_13 = __pyx_v_eN;
10095  __pyx_t_14 = __pyx_v_j;
10096  __pyx_t_15 = -1;
10097  if (__pyx_t_13 < 0) {
10098  __pyx_t_13 += __pyx_pybuffernd_u_l2g.diminfo[0].shape;
10099  if (unlikely(__pyx_t_13 < 0)) __pyx_t_15 = 0;
10100  } else if (unlikely(__pyx_t_13 >= __pyx_pybuffernd_u_l2g.diminfo[0].shape)) __pyx_t_15 = 0;
10101  if (__pyx_t_14 < 0) {
10102  __pyx_t_14 += __pyx_pybuffernd_u_l2g.diminfo[1].shape;
10103  if (unlikely(__pyx_t_14 < 0)) __pyx_t_15 = 1;
10104  } else if (unlikely(__pyx_t_14 >= __pyx_pybuffernd_u_l2g.diminfo[1].shape)) __pyx_t_15 = 1;
10105  if (unlikely(__pyx_t_15 != -1)) {
10106  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10107  __PYX_ERR(0, 415, __pyx_L1_error)
10108  }
10109  __pyx_t_16 = (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_u_l2g.rcbuffer->pybuffer.buf, __pyx_t_13, __pyx_pybuffernd_u_l2g.diminfo[0].strides, __pyx_t_14, __pyx_pybuffernd_u_l2g.diminfo[1].strides));
10110  __pyx_t_15 = -1;
10111  if (__pyx_t_16 < 0) {
10112  __pyx_t_16 += __pyx_pybuffernd_u_dof.diminfo[0].shape;
10113  if (unlikely(__pyx_t_16 < 0)) __pyx_t_15 = 0;
10114  } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_u_dof.diminfo[0].shape)) __pyx_t_15 = 0;
10115  if (unlikely(__pyx_t_15 != -1)) {
10116  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10117  __PYX_ERR(0, 415, __pyx_L1_error)
10118  }
10119  __pyx_v_u_j = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_u_dof.rcbuffer->pybuffer.buf, __pyx_t_16, __pyx_pybuffernd_u_dof.diminfo[0].strides));
10120 
10121  /* "subsurfaceTransportFunctions.pyx":416
10122  * for j in range(nDOF_trial_element):
10123  * u_j = u_dof[u_l2g[eN,j]]
10124  * q_u[eN,j] = u_j # <<<<<<<<<<<<<<
10125  *
10126  * #VGM evaluation
10127  */
10128  __pyx_t_17 = __pyx_v_eN;
10129  __pyx_t_18 = __pyx_v_j;
10130  __pyx_t_15 = -1;
10131  if (__pyx_t_17 < 0) {
10132  __pyx_t_17 += __pyx_pybuffernd_q_u.diminfo[0].shape;
10133  if (unlikely(__pyx_t_17 < 0)) __pyx_t_15 = 0;
10134  } else if (unlikely(__pyx_t_17 >= __pyx_pybuffernd_q_u.diminfo[0].shape)) __pyx_t_15 = 0;
10135  if (__pyx_t_18 < 0) {
10136  __pyx_t_18 += __pyx_pybuffernd_q_u.diminfo[1].shape;
10137  if (unlikely(__pyx_t_18 < 0)) __pyx_t_15 = 1;
10138  } else if (unlikely(__pyx_t_18 >= __pyx_pybuffernd_q_u.diminfo[1].shape)) __pyx_t_15 = 1;
10139  if (unlikely(__pyx_t_15 != -1)) {
10140  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10141  __PYX_ERR(0, 416, __pyx_L1_error)
10142  }
10143  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_u.rcbuffer->pybuffer.buf, __pyx_t_17, __pyx_pybuffernd_q_u.diminfo[0].strides, __pyx_t_18, __pyx_pybuffernd_q_u.diminfo[1].strides) = __pyx_v_u_j;
10144 
10145  /* "subsurfaceTransportFunctions.pyx":419
10146  *
10147  * #VGM evaluation
10148  * psiC = -u_j # <<<<<<<<<<<<<<
10149  * m = 1.0 - 1.0/n[matID]
10150  * thetaS = thetaR[matID] + thetaSR[matID]
10151  */
10152  __pyx_v_psiC = (-__pyx_v_u_j);
10153 
10154  /* "subsurfaceTransportFunctions.pyx":420
10155  * #VGM evaluation
10156  * psiC = -u_j
10157  * m = 1.0 - 1.0/n[matID] # <<<<<<<<<<<<<<
10158  * thetaS = thetaR[matID] + thetaSR[matID]
10159  * if psiC > 0.0:
10160  */
10161  __pyx_t_19 = __pyx_v_matID;
10162  __pyx_t_15 = -1;
10163  if (__pyx_t_19 < 0) {
10164  __pyx_t_19 += __pyx_pybuffernd_n.diminfo[0].shape;
10165  if (unlikely(__pyx_t_19 < 0)) __pyx_t_15 = 0;
10166  } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_n.diminfo[0].shape)) __pyx_t_15 = 0;
10167  if (unlikely(__pyx_t_15 != -1)) {
10168  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10169  __PYX_ERR(0, 420, __pyx_L1_error)
10170  }
10171  __pyx_t_20 = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_n.rcbuffer->pybuffer.buf, __pyx_t_19, __pyx_pybuffernd_n.diminfo[0].strides));
10172  if (unlikely(__pyx_t_20 == 0)) {
10173  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
10174  __PYX_ERR(0, 420, __pyx_L1_error)
10175  }
10176  __pyx_v_m = (1.0 - (1.0 / __pyx_t_20));
10177 
10178  /* "subsurfaceTransportFunctions.pyx":421
10179  * psiC = -u_j
10180  * m = 1.0 - 1.0/n[matID]
10181  * thetaS = thetaR[matID] + thetaSR[matID] # <<<<<<<<<<<<<<
10182  * if psiC > 0.0:
10183  * pcBar = alpha[matID]*psiC
10184  */
10185  __pyx_t_21 = __pyx_v_matID;
10186  __pyx_t_15 = -1;
10187  if (__pyx_t_21 < 0) {
10188  __pyx_t_21 += __pyx_pybuffernd_thetaR.diminfo[0].shape;
10189  if (unlikely(__pyx_t_21 < 0)) __pyx_t_15 = 0;
10190  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_thetaR.diminfo[0].shape)) __pyx_t_15 = 0;
10191  if (unlikely(__pyx_t_15 != -1)) {
10192  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10193  __PYX_ERR(0, 421, __pyx_L1_error)
10194  }
10195  __pyx_t_22 = __pyx_v_matID;
10196  __pyx_t_15 = -1;
10197  if (__pyx_t_22 < 0) {
10198  __pyx_t_22 += __pyx_pybuffernd_thetaSR.diminfo[0].shape;
10199  if (unlikely(__pyx_t_22 < 0)) __pyx_t_15 = 0;
10200  } else if (unlikely(__pyx_t_22 >= __pyx_pybuffernd_thetaSR.diminfo[0].shape)) __pyx_t_15 = 0;
10201  if (unlikely(__pyx_t_15 != -1)) {
10202  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10203  __PYX_ERR(0, 421, __pyx_L1_error)
10204  }
10205  __pyx_v_thetaS = ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaR.rcbuffer->pybuffer.buf, __pyx_t_21, __pyx_pybuffernd_thetaR.diminfo[0].strides)) + (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaSR.rcbuffer->pybuffer.buf, __pyx_t_22, __pyx_pybuffernd_thetaSR.diminfo[0].strides)));
10206 
10207  /* "subsurfaceTransportFunctions.pyx":422
10208  * m = 1.0 - 1.0/n[matID]
10209  * thetaS = thetaR[matID] + thetaSR[matID]
10210  * if psiC > 0.0: # <<<<<<<<<<<<<<
10211  * pcBar = alpha[matID]*psiC
10212  * pcBar_nM2 = pow(pcBar,n[matID]-2)
10213  */
10214  __pyx_t_6 = ((__pyx_v_psiC > 0.0) != 0);
10215  if (__pyx_t_6) {
10216 
10217  /* "subsurfaceTransportFunctions.pyx":423
10218  * thetaS = thetaR[matID] + thetaSR[matID]
10219  * if psiC > 0.0:
10220  * pcBar = alpha[matID]*psiC # <<<<<<<<<<<<<<
10221  * pcBar_nM2 = pow(pcBar,n[matID]-2)
10222  * pcBar_nM1 = pcBar_nM2*pcBar
10223  */
10224  __pyx_t_23 = __pyx_v_matID;
10225  __pyx_t_15 = -1;
10226  if (__pyx_t_23 < 0) {
10227  __pyx_t_23 += __pyx_pybuffernd_alpha.diminfo[0].shape;
10228  if (unlikely(__pyx_t_23 < 0)) __pyx_t_15 = 0;
10229  } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_alpha.diminfo[0].shape)) __pyx_t_15 = 0;
10230  if (unlikely(__pyx_t_15 != -1)) {
10231  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10232  __PYX_ERR(0, 423, __pyx_L1_error)
10233  }
10234  __pyx_v_pcBar = ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_alpha.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_alpha.diminfo[0].strides)) * __pyx_v_psiC);
10235 
10236  /* "subsurfaceTransportFunctions.pyx":424
10237  * if psiC > 0.0:
10238  * pcBar = alpha[matID]*psiC
10239  * pcBar_nM2 = pow(pcBar,n[matID]-2) # <<<<<<<<<<<<<<
10240  * pcBar_nM1 = pcBar_nM2*pcBar
10241  * pcBar_n = pcBar_nM1*pcBar
10242  */
10243  __pyx_t_24 = __pyx_v_matID;
10244  __pyx_t_15 = -1;
10245  if (__pyx_t_24 < 0) {
10246  __pyx_t_24 += __pyx_pybuffernd_n.diminfo[0].shape;
10247  if (unlikely(__pyx_t_24 < 0)) __pyx_t_15 = 0;
10248  } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_n.diminfo[0].shape)) __pyx_t_15 = 0;
10249  if (unlikely(__pyx_t_15 != -1)) {
10250  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10251  __PYX_ERR(0, 424, __pyx_L1_error)
10252  }
10253  __pyx_v_pcBar_nM2 = pow(__pyx_v_pcBar, ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_n.rcbuffer->pybuffer.buf, __pyx_t_24, __pyx_pybuffernd_n.diminfo[0].strides)) - 2.0));
10254 
10255  /* "subsurfaceTransportFunctions.pyx":425
10256  * pcBar = alpha[matID]*psiC
10257  * pcBar_nM2 = pow(pcBar,n[matID]-2)
10258  * pcBar_nM1 = pcBar_nM2*pcBar # <<<<<<<<<<<<<<
10259  * pcBar_n = pcBar_nM1*pcBar
10260  * onePlus_pcBar_n = 1.0 + pcBar_n
10261  */
10262  __pyx_v_pcBar_nM1 = (__pyx_v_pcBar_nM2 * __pyx_v_pcBar);
10263 
10264  /* "subsurfaceTransportFunctions.pyx":426
10265  * pcBar_nM2 = pow(pcBar,n[matID]-2)
10266  * pcBar_nM1 = pcBar_nM2*pcBar
10267  * pcBar_n = pcBar_nM1*pcBar # <<<<<<<<<<<<<<
10268  * onePlus_pcBar_n = 1.0 + pcBar_n
10269  *
10270  */
10271  __pyx_v_pcBar_n = (__pyx_v_pcBar_nM1 * __pyx_v_pcBar);
10272 
10273  /* "subsurfaceTransportFunctions.pyx":427
10274  * pcBar_nM1 = pcBar_nM2*pcBar
10275  * pcBar_n = pcBar_nM1*pcBar
10276  * onePlus_pcBar_n = 1.0 + pcBar_n # <<<<<<<<<<<<<<
10277  *
10278  * sBar = pow(onePlus_pcBar_n,-m)
10279  */
10280  __pyx_v_onePlus_pcBar_n = (1.0 + __pyx_v_pcBar_n);
10281 
10282  /* "subsurfaceTransportFunctions.pyx":429
10283  * onePlus_pcBar_n = 1.0 + pcBar_n
10284  *
10285  * sBar = pow(onePlus_pcBar_n,-m) # <<<<<<<<<<<<<<
10286  * # using -mn = 1-n
10287  * DsBar_DpsiC = alpha[matID]*(1.0-n[matID])*(sBar/onePlus_pcBar_n)*pcBar_nM1
10288  */
10289  __pyx_v_sBar = pow(__pyx_v_onePlus_pcBar_n, (-__pyx_v_m));
10290 
10291  /* "subsurfaceTransportFunctions.pyx":431
10292  * sBar = pow(onePlus_pcBar_n,-m)
10293  * # using -mn = 1-n
10294  * DsBar_DpsiC = alpha[matID]*(1.0-n[matID])*(sBar/onePlus_pcBar_n)*pcBar_nM1 # <<<<<<<<<<<<<<
10295  *
10296  * vBar = 1.0-pcBar_nM1*sBar
10297  */
10298  __pyx_t_25 = __pyx_v_matID;
10299  __pyx_t_15 = -1;
10300  if (__pyx_t_25 < 0) {
10301  __pyx_t_25 += __pyx_pybuffernd_alpha.diminfo[0].shape;
10302  if (unlikely(__pyx_t_25 < 0)) __pyx_t_15 = 0;
10303  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_alpha.diminfo[0].shape)) __pyx_t_15 = 0;
10304  if (unlikely(__pyx_t_15 != -1)) {
10305  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10306  __PYX_ERR(0, 431, __pyx_L1_error)
10307  }
10308  __pyx_t_26 = __pyx_v_matID;
10309  __pyx_t_15 = -1;
10310  if (__pyx_t_26 < 0) {
10311  __pyx_t_26 += __pyx_pybuffernd_n.diminfo[0].shape;
10312  if (unlikely(__pyx_t_26 < 0)) __pyx_t_15 = 0;
10313  } else if (unlikely(__pyx_t_26 >= __pyx_pybuffernd_n.diminfo[0].shape)) __pyx_t_15 = 0;
10314  if (unlikely(__pyx_t_15 != -1)) {
10315  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10316  __PYX_ERR(0, 431, __pyx_L1_error)
10317  }
10318  if (unlikely(__pyx_v_onePlus_pcBar_n == 0)) {
10319  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
10320  __PYX_ERR(0, 431, __pyx_L1_error)
10321  }
10322  __pyx_v_DsBar_DpsiC = ((((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_alpha.rcbuffer->pybuffer.buf, __pyx_t_25, __pyx_pybuffernd_alpha.diminfo[0].strides)) * (1.0 - (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_n.rcbuffer->pybuffer.buf, __pyx_t_26, __pyx_pybuffernd_n.diminfo[0].strides)))) * (__pyx_v_sBar / __pyx_v_onePlus_pcBar_n)) * __pyx_v_pcBar_nM1);
10323 
10324  /* "subsurfaceTransportFunctions.pyx":433
10325  * DsBar_DpsiC = alpha[matID]*(1.0-n[matID])*(sBar/onePlus_pcBar_n)*pcBar_nM1
10326  *
10327  * vBar = 1.0-pcBar_nM1*sBar # <<<<<<<<<<<<<<
10328  * vBar2 = vBar*vBar
10329  * DvBar_DpsiC = -alpha[matID]*(n[matID]-1.0)*pcBar_nM2*sBar - pcBar_nM1*DsBar_DpsiC
10330  */
10331  __pyx_v_vBar = (1.0 - (__pyx_v_pcBar_nM1 * __pyx_v_sBar));
10332 
10333  /* "subsurfaceTransportFunctions.pyx":434
10334  *
10335  * vBar = 1.0-pcBar_nM1*sBar
10336  * vBar2 = vBar*vBar # <<<<<<<<<<<<<<
10337  * DvBar_DpsiC = -alpha[matID]*(n[matID]-1.0)*pcBar_nM2*sBar - pcBar_nM1*DsBar_DpsiC
10338  *
10339  */
10340  __pyx_v_vBar2 = (__pyx_v_vBar * __pyx_v_vBar);
10341 
10342  /* "subsurfaceTransportFunctions.pyx":435
10343  * vBar = 1.0-pcBar_nM1*sBar
10344  * vBar2 = vBar*vBar
10345  * DvBar_DpsiC = -alpha[matID]*(n[matID]-1.0)*pcBar_nM2*sBar - pcBar_nM1*DsBar_DpsiC # <<<<<<<<<<<<<<
10346  *
10347  * thetaW = thetaSR[matID]*sBar + thetaR[matID]
10348  */
10349  __pyx_t_27 = __pyx_v_matID;
10350  __pyx_t_15 = -1;
10351  if (__pyx_t_27 < 0) {
10352  __pyx_t_27 += __pyx_pybuffernd_alpha.diminfo[0].shape;
10353  if (unlikely(__pyx_t_27 < 0)) __pyx_t_15 = 0;
10354  } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_alpha.diminfo[0].shape)) __pyx_t_15 = 0;
10355  if (unlikely(__pyx_t_15 != -1)) {
10356  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10357  __PYX_ERR(0, 435, __pyx_L1_error)
10358  }
10359  __pyx_t_28 = __pyx_v_matID;
10360  __pyx_t_15 = -1;
10361  if (__pyx_t_28 < 0) {
10362  __pyx_t_28 += __pyx_pybuffernd_n.diminfo[0].shape;
10363  if (unlikely(__pyx_t_28 < 0)) __pyx_t_15 = 0;
10364  } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_n.diminfo[0].shape)) __pyx_t_15 = 0;
10365  if (unlikely(__pyx_t_15 != -1)) {
10366  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10367  __PYX_ERR(0, 435, __pyx_L1_error)
10368  }
10369  __pyx_v_DvBar_DpsiC = (((((-(*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_alpha.rcbuffer->pybuffer.buf, __pyx_t_27, __pyx_pybuffernd_alpha.diminfo[0].strides))) * ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_n.rcbuffer->pybuffer.buf, __pyx_t_28, __pyx_pybuffernd_n.diminfo[0].strides)) - 1.0)) * __pyx_v_pcBar_nM2) * __pyx_v_sBar) - (__pyx_v_pcBar_nM1 * __pyx_v_DsBar_DpsiC));
10370 
10371  /* "subsurfaceTransportFunctions.pyx":437
10372  * DvBar_DpsiC = -alpha[matID]*(n[matID]-1.0)*pcBar_nM2*sBar - pcBar_nM1*DsBar_DpsiC
10373  *
10374  * thetaW = thetaSR[matID]*sBar + thetaR[matID] # <<<<<<<<<<<<<<
10375  * DthetaW_DpsiC = thetaSR[matID] * DsBar_DpsiC
10376  *
10377  */
10378  __pyx_t_29 = __pyx_v_matID;
10379  __pyx_t_15 = -1;
10380  if (__pyx_t_29 < 0) {
10381  __pyx_t_29 += __pyx_pybuffernd_thetaSR.diminfo[0].shape;
10382  if (unlikely(__pyx_t_29 < 0)) __pyx_t_15 = 0;
10383  } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_thetaSR.diminfo[0].shape)) __pyx_t_15 = 0;
10384  if (unlikely(__pyx_t_15 != -1)) {
10385  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10386  __PYX_ERR(0, 437, __pyx_L1_error)
10387  }
10388  __pyx_t_30 = __pyx_v_matID;
10389  __pyx_t_15 = -1;
10390  if (__pyx_t_30 < 0) {
10391  __pyx_t_30 += __pyx_pybuffernd_thetaR.diminfo[0].shape;
10392  if (unlikely(__pyx_t_30 < 0)) __pyx_t_15 = 0;
10393  } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_thetaR.diminfo[0].shape)) __pyx_t_15 = 0;
10394  if (unlikely(__pyx_t_15 != -1)) {
10395  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10396  __PYX_ERR(0, 437, __pyx_L1_error)
10397  }
10398  __pyx_v_thetaW = (((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaSR.rcbuffer->pybuffer.buf, __pyx_t_29, __pyx_pybuffernd_thetaSR.diminfo[0].strides)) * __pyx_v_sBar) + (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaR.rcbuffer->pybuffer.buf, __pyx_t_30, __pyx_pybuffernd_thetaR.diminfo[0].strides)));
10399 
10400  /* "subsurfaceTransportFunctions.pyx":438
10401  *
10402  * thetaW = thetaSR[matID]*sBar + thetaR[matID]
10403  * DthetaW_DpsiC = thetaSR[matID] * DsBar_DpsiC # <<<<<<<<<<<<<<
10404  *
10405  * sqrt_sBar = sqrt(sBar)
10406  */
10407  __pyx_t_31 = __pyx_v_matID;
10408  __pyx_t_15 = -1;
10409  if (__pyx_t_31 < 0) {
10410  __pyx_t_31 += __pyx_pybuffernd_thetaSR.diminfo[0].shape;
10411  if (unlikely(__pyx_t_31 < 0)) __pyx_t_15 = 0;
10412  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_thetaSR.diminfo[0].shape)) __pyx_t_15 = 0;
10413  if (unlikely(__pyx_t_15 != -1)) {
10414  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10415  __PYX_ERR(0, 438, __pyx_L1_error)
10416  }
10417  __pyx_v_DthetaW_DpsiC = ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaSR.rcbuffer->pybuffer.buf, __pyx_t_31, __pyx_pybuffernd_thetaSR.diminfo[0].strides)) * __pyx_v_DsBar_DpsiC);
10418 
10419  /* "subsurfaceTransportFunctions.pyx":440
10420  * DthetaW_DpsiC = thetaSR[matID] * DsBar_DpsiC
10421  *
10422  * sqrt_sBar = sqrt(sBar) # <<<<<<<<<<<<<<
10423  * KWr= sqrt_sBar*vBar2
10424  * DKWr_DpsiC= ((0.5/sqrt_sBar)*DsBar_DpsiC*vBar2 + 2.0*sqrt_sBar*vBar*DvBar_DpsiC)
10425  */
10426  __pyx_v_sqrt_sBar = sqrt(__pyx_v_sBar);
10427 
10428  /* "subsurfaceTransportFunctions.pyx":441
10429  *
10430  * sqrt_sBar = sqrt(sBar)
10431  * KWr= sqrt_sBar*vBar2 # <<<<<<<<<<<<<<
10432  * DKWr_DpsiC= ((0.5/sqrt_sBar)*DsBar_DpsiC*vBar2 + 2.0*sqrt_sBar*vBar*DvBar_DpsiC)
10433  * else:
10434  */
10435  __pyx_v_KWr = (__pyx_v_sqrt_sBar * __pyx_v_vBar2);
10436 
10437  /* "subsurfaceTransportFunctions.pyx":442
10438  * sqrt_sBar = sqrt(sBar)
10439  * KWr= sqrt_sBar*vBar2
10440  * DKWr_DpsiC= ((0.5/sqrt_sBar)*DsBar_DpsiC*vBar2 + 2.0*sqrt_sBar*vBar*DvBar_DpsiC) # <<<<<<<<<<<<<<
10441  * else:
10442  * thetaW = thetaS
10443  */
10444  if (unlikely(__pyx_v_sqrt_sBar == 0)) {
10445  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
10446  __PYX_ERR(0, 442, __pyx_L1_error)
10447  }
10448  __pyx_v_DKWr_DpsiC = ((((0.5 / __pyx_v_sqrt_sBar) * __pyx_v_DsBar_DpsiC) * __pyx_v_vBar2) + (((2.0 * __pyx_v_sqrt_sBar) * __pyx_v_vBar) * __pyx_v_DvBar_DpsiC));
10449 
10450  /* "subsurfaceTransportFunctions.pyx":422
10451  * m = 1.0 - 1.0/n[matID]
10452  * thetaS = thetaR[matID] + thetaSR[matID]
10453  * if psiC > 0.0: # <<<<<<<<<<<<<<
10454  * pcBar = alpha[matID]*psiC
10455  * pcBar_nM2 = pow(pcBar,n[matID]-2)
10456  */
10457  goto __pyx_L9;
10458  }
10459 
10460  /* "subsurfaceTransportFunctions.pyx":444
10461  * DKWr_DpsiC= ((0.5/sqrt_sBar)*DsBar_DpsiC*vBar2 + 2.0*sqrt_sBar*vBar*DvBar_DpsiC)
10462  * else:
10463  * thetaW = thetaS # <<<<<<<<<<<<<<
10464  * DthetaW_DpsiC = 0.0
10465  * KWr = 1.0
10466  */
10467  /*else*/ {
10468  __pyx_v_thetaW = __pyx_v_thetaS;
10469 
10470  /* "subsurfaceTransportFunctions.pyx":445
10471  * else:
10472  * thetaW = thetaS
10473  * DthetaW_DpsiC = 0.0 # <<<<<<<<<<<<<<
10474  * KWr = 1.0
10475  * DKWr_DpsiC = 0.0
10476  */
10477  __pyx_v_DthetaW_DpsiC = 0.0;
10478 
10479  /* "subsurfaceTransportFunctions.pyx":446
10480  * thetaW = thetaS
10481  * DthetaW_DpsiC = 0.0
10482  * KWr = 1.0 # <<<<<<<<<<<<<<
10483  * DKWr_DpsiC = 0.0
10484  * #
10485  */
10486  __pyx_v_KWr = 1.0;
10487 
10488  /* "subsurfaceTransportFunctions.pyx":447
10489  * DthetaW_DpsiC = 0.0
10490  * KWr = 1.0
10491  * DKWr_DpsiC = 0.0 # <<<<<<<<<<<<<<
10492  * #
10493  * rhom = rho*exp(beta*u_j)
10494  */
10495  __pyx_v_DKWr_DpsiC = 0.0;
10496  }
10497  __pyx_L9:;
10498 
10499  /* "subsurfaceTransportFunctions.pyx":449
10500  * DKWr_DpsiC = 0.0
10501  * #
10502  * rhom = rho*exp(beta*u_j) # <<<<<<<<<<<<<<
10503  * drhom= beta*rhom
10504  * q_mass[eN,j] = rhom*thetaW
10505  */
10506  __pyx_v_rhom = (__pyx_v_rho * exp((__pyx_v_beta * __pyx_v_u_j)));
10507 
10508  /* "subsurfaceTransportFunctions.pyx":450
10509  * #
10510  * rhom = rho*exp(beta*u_j)
10511  * drhom= beta*rhom # <<<<<<<<<<<<<<
10512  * q_mass[eN,j] = rhom*thetaW
10513  * q_dmass[eN,j]=-rhom*DthetaW_DpsiC+drhom*thetaW
10514  */
10515  __pyx_v_drhom = (__pyx_v_beta * __pyx_v_rhom);
10516 
10517  /* "subsurfaceTransportFunctions.pyx":451
10518  * rhom = rho*exp(beta*u_j)
10519  * drhom= beta*rhom
10520  * q_mass[eN,j] = rhom*thetaW # <<<<<<<<<<<<<<
10521  * q_dmass[eN,j]=-rhom*DthetaW_DpsiC+drhom*thetaW
10522  *
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10525  __pyx_t_33 = __pyx_v_j;
10526  __pyx_t_15 = -1;
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10530  } else if (unlikely(__pyx_t_32 >= __pyx_pybuffernd_q_mass.diminfo[0].shape)) __pyx_t_15 = 0;
10531  if (__pyx_t_33 < 0) {
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10534  } else if (unlikely(__pyx_t_33 >= __pyx_pybuffernd_q_mass.diminfo[1].shape)) __pyx_t_15 = 1;
10535  if (unlikely(__pyx_t_15 != -1)) {
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10540 
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10542  * drhom= beta*rhom
10543  * q_mass[eN,j] = rhom*thetaW
10544  * q_dmass[eN,j]=-rhom*DthetaW_DpsiC+drhom*thetaW # <<<<<<<<<<<<<<
10545  *
10546  * q_kr[eN,j] = KWr
10547  */
10548  __pyx_t_34 = __pyx_v_eN;
10549  __pyx_t_35 = __pyx_v_j;
10550  __pyx_t_15 = -1;
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10554  } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_q_dmass.diminfo[0].shape)) __pyx_t_15 = 0;
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10558  } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_q_dmass.diminfo[1].shape)) __pyx_t_15 = 1;
10559  if (unlikely(__pyx_t_15 != -1)) {
10560  __Pyx_RaiseBufferIndexError(__pyx_t_15);
10561  __PYX_ERR(0, 452, __pyx_L1_error)
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10564 
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10566  * q_dmass[eN,j]=-rhom*DthetaW_DpsiC+drhom*thetaW
10567  *
10568  * q_kr[eN,j] = KWr # <<<<<<<<<<<<<<
10569  * q_dkr[eN,j]= -DKWr_DpsiC
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10579  if (__pyx_t_37 < 0) {
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10588 
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10590  *
10591  * q_kr[eN,j] = KWr
10592  * q_dkr[eN,j]= -DKWr_DpsiC # <<<<<<<<<<<<<<
10593  *
10594  * #j
10595  */
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10597  __pyx_t_39 = __pyx_v_j;
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10612  }
10613  }
10614 
10615  /* "subsurfaceTransportFunctions.pyx":461
10616  *
10617  * #now upwind kr
10618  * for eN in range(nElements_global): # <<<<<<<<<<<<<<
10619  * u_eN = numpy.sum(q_u[eN])*nAvgWeight
10620  * kr_eN = numpy.sum(q_kr[eN])*nAvgWeight
10621  */
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10625 
10626  /* "subsurfaceTransportFunctions.pyx":462
10627  * #now upwind kr
10628  * for eN in range(nElements_global):
10629  * u_eN = numpy.sum(q_u[eN])*nAvgWeight # <<<<<<<<<<<<<<
10630  * kr_eN = numpy.sum(q_kr[eN])*nAvgWeight
10631  * #potential assumes slight compressibility
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10646  __Pyx_INCREF(function);
10647  __Pyx_DECREF_SET(__pyx_t_1, function);
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10649  }
10650  if (!__pyx_t_4) {
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10652  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
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10667  __pyx_t_2 = __Pyx_PyCFunction_FastCall(__pyx_t_1, __pyx_temp+1-1, 1+1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 462, __pyx_L1_error)
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10677  __Pyx_GIVEREF(__pyx_t_5);
10678  PyTuple_SET_ITEM(__pyx_t_40, 0+1, __pyx_t_5);
10679  __pyx_t_5 = 0;
10680  __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_1, __pyx_t_40, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 462, __pyx_L1_error)
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10685  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10686  __pyx_t_1 = PyFloat_FromDouble(__pyx_v_nAvgWeight); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 462, __pyx_L1_error)
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10692  __pyx_t_7 = __pyx_PyFloat_AsDouble(__pyx_t_40); if (unlikely((__pyx_t_7 == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 462, __pyx_L1_error)
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10695 
10696  /* "subsurfaceTransportFunctions.pyx":463
10697  * for eN in range(nElements_global):
10698  * u_eN = numpy.sum(q_u[eN])*nAvgWeight
10699  * kr_eN = numpy.sum(q_kr[eN])*nAvgWeight # <<<<<<<<<<<<<<
10700  * #potential assumes slight compressibility
10701  * phi_eN= u_eN - numpy.dot(gravity,elementBarycentersArray[eN])
10702  */
10703  __pyx_t_1 = __Pyx_GetModuleGlobalName(__pyx_n_s_numpy); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 463, __pyx_L1_error)
10704  __Pyx_GOTREF(__pyx_t_1);
10705  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_sum); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 463, __pyx_L1_error)
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10707  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10708  __pyx_t_1 = __Pyx_GetItemInt(((PyObject *)__pyx_v_q_kr), __pyx_v_eN, int, 1, __Pyx_PyInt_From_int, 0, 1, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 463, __pyx_L1_error)
10709  __Pyx_GOTREF(__pyx_t_1);
10710  __pyx_t_5 = NULL;
10711  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_2))) {
10712  __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_2);
10713  if (likely(__pyx_t_5)) {
10714  PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
10715  __Pyx_INCREF(__pyx_t_5);
10716  __Pyx_INCREF(function);
10717  __Pyx_DECREF_SET(__pyx_t_2, function);
10718  }
10719  }
10720  if (!__pyx_t_5) {
10721  __pyx_t_40 = __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_1); if (unlikely(!__pyx_t_40)) __PYX_ERR(0, 463, __pyx_L1_error)
10722  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10723  __Pyx_GOTREF(__pyx_t_40);
10724  } else {
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11117  /* "subsurfaceTransportFunctions.pyx":479
11118  * phi_neig= u_neig - numpy.dot(gravity,elementBarycentersArray[eN_neighbor])
11119  *
11120  * if phi_eN < phi_neig: #neighbor is upwind # <<<<<<<<<<<<<<
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11122  *
11123  */
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11127  /* "subsurfaceTransportFunctions.pyx":480
11128  *
11129  * if phi_eN < phi_neig: #neighbor is upwind
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11153  *
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11156  *
11157  */
11158  }
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11161  * q_kr_up[eN,ebN] = kr_eN
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11172  *
11173  *
11174  * def RE_NCP1_evaluateElementCoefficients_VGM(double rho, # <<<<<<<<<<<<<<
11175  * double beta,
11176  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
11177  */
11178 
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11241 /* "subsurfaceTransportFunctions.pyx":486
11242  * #eN for upwind
11243  *
11244  * def RE_NCP1_getElementResidual(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
11245  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
11246  * numpy.ndarray[ITYPE_t,ndim=1] colind,
11247  */
11248 
11249 /* Python wrapper */
11250 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_33RE_NCP1_getElementResidual(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
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11255  PyArrayObject *__pyx_v_rowptr = 0;
11256  PyArrayObject *__pyx_v_colind = 0;
11257  int __pyx_v_nSpace;
11258  int __pyx_v_nElements_global;
11259  int __pyx_v_nElementBoundaries_element;
11260  CYTHON_UNUSED PyArrayObject *__pyx_v_elementNeighborsArray = 0;
11261  CYTHON_UNUSED PyArrayObject *__pyx_v_elementBarycentersArray = 0;
11262  int __pyx_v_nDOF_test_element;
11263  PyArrayObject *__pyx_v_q_u = 0;
11264  PyArrayObject *__pyx_v_q_grad_u = 0;
11265  PyArrayObject *__pyx_v_q_grad_w = 0;
11266  PyArrayObject *__pyx_v_q_detJ = 0;
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11269  PyArrayObject *__pyx_v_q_r = 0;
11270  PyArrayObject *__pyx_v_q_kr = 0;
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11272  PyArrayObject *__pyx_v_q_flin = 0;
11273  PyArrayObject *__pyx_v_q_alin = 0;
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11313  else goto __pyx_L5_argtuple_error;
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11332  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 4); __PYX_ERR(0, 486, __pyx_L3_error)
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11336  else {
11337  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 5); __PYX_ERR(0, 486, __pyx_L3_error)
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11342  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 6); __PYX_ERR(0, 486, __pyx_L3_error)
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11412  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 20); __PYX_ERR(0, 486, __pyx_L3_error)
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11505  int __pyx_v_eN;
11506  int __pyx_v_ii;
11507  int __pyx_v_I;
11508  int __pyx_v_i;
11509  int __pyx_v_ebN;
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12115  * volFactor = 0.5
12116  * if nSpace == 3:
12117  * volFactor = 1.0/6.0 # <<<<<<<<<<<<<<
12118  * #
12119  * for eN in range(nElements_global):
12120  */
12121  __pyx_v_volFactor = (1.0 / 6.0);
12122 
12123  /* "subsurfaceTransportFunctions.pyx":543
12124  * if nSpace == 2:
12125  * volFactor = 0.5
12126  * if nSpace == 3: # <<<<<<<<<<<<<<
12127  * volFactor = 1.0/6.0
12128  * #
12129  */
12130  }
12131 
12132  /* "subsurfaceTransportFunctions.pyx":546
12133  * volFactor = 1.0/6.0
12134  * #
12135  * for eN in range(nElements_global): # <<<<<<<<<<<<<<
12136  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation
12137  * weight = nAvgWeight*volume
12138  */
12139  __pyx_t_8 = __pyx_v_nElements_global;
12140  for (__pyx_t_13 = 0; __pyx_t_13 < __pyx_t_8; __pyx_t_13+=1) {
12141  __pyx_v_eN = __pyx_t_13;
12142 
12143  /* "subsurfaceTransportFunctions.pyx":547
12144  * #
12145  * for eN in range(nElements_global):
12146  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation # <<<<<<<<<<<<<<
12147  * weight = nAvgWeight*volume
12148  *
12149  */
12150  __pyx_t_14 = __pyx_v_eN;
12151  __pyx_t_15 = 0;
12152  __pyx_t_16 = -1;
12153  if (__pyx_t_14 < 0) {
12154  __pyx_t_14 += __pyx_pybuffernd_q_detJ.diminfo[0].shape;
12155  if (unlikely(__pyx_t_14 < 0)) __pyx_t_16 = 0;
12156  } else if (unlikely(__pyx_t_14 >= __pyx_pybuffernd_q_detJ.diminfo[0].shape)) __pyx_t_16 = 0;
12157  if (__pyx_t_15 < 0) {
12158  __pyx_t_15 += __pyx_pybuffernd_q_detJ.diminfo[1].shape;
12159  if (unlikely(__pyx_t_15 < 0)) __pyx_t_16 = 1;
12160  } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_q_detJ.diminfo[1].shape)) __pyx_t_16 = 1;
12161  if (unlikely(__pyx_t_16 != -1)) {
12162  __Pyx_RaiseBufferIndexError(__pyx_t_16);
12163  __PYX_ERR(0, 547, __pyx_L1_error)
12164  }
12165  __pyx_v_volume = (__pyx_v_volFactor * fabs((*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_detJ.rcbuffer->pybuffer.buf, __pyx_t_14, __pyx_pybuffernd_q_detJ.diminfo[0].strides, __pyx_t_15, __pyx_pybuffernd_q_detJ.diminfo[1].strides))));
12166 
12167  /* "subsurfaceTransportFunctions.pyx":548
12168  * for eN in range(nElements_global):
12169  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation
12170  * weight = nAvgWeight*volume # <<<<<<<<<<<<<<
12171  *
12172  * for i in range(nDOF_test_element):
12173  */
12174  __pyx_v_weight = (__pyx_v_nAvgWeight * __pyx_v_volume);
12175 
12176  /* "subsurfaceTransportFunctions.pyx":550
12177  * weight = nAvgWeight*volume
12178  *
12179  * for i in range(nDOF_test_element): # <<<<<<<<<<<<<<
12180  * #nodal quadrature so diagonal
12181  * ##mass
12182  */
12183  __pyx_t_16 = __pyx_v_nDOF_test_element;
12184  for (__pyx_t_17 = 0; __pyx_t_17 < __pyx_t_16; __pyx_t_17+=1) {
12185  __pyx_v_i = __pyx_t_17;
12186 
12187  /* "subsurfaceTransportFunctions.pyx":553
12188  * #nodal quadrature so diagonal
12189  * ##mass
12190  * elementResidual[eN,i] += weight*q_mt[eN,i] # <<<<<<<<<<<<<<
12191  * ##sources
12192  * elementResidual[eN,i] += weight*q_r[eN,i]
12193  */
12194  __pyx_t_18 = __pyx_v_eN;
12195  __pyx_t_19 = __pyx_v_i;
12196  __pyx_t_20 = -1;
12197  if (__pyx_t_18 < 0) {
12198  __pyx_t_18 += __pyx_pybuffernd_q_mt.diminfo[0].shape;
12199  if (unlikely(__pyx_t_18 < 0)) __pyx_t_20 = 0;
12200  } else if (unlikely(__pyx_t_18 >= __pyx_pybuffernd_q_mt.diminfo[0].shape)) __pyx_t_20 = 0;
12201  if (__pyx_t_19 < 0) {
12202  __pyx_t_19 += __pyx_pybuffernd_q_mt.diminfo[1].shape;
12203  if (unlikely(__pyx_t_19 < 0)) __pyx_t_20 = 1;
12204  } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_q_mt.diminfo[1].shape)) __pyx_t_20 = 1;
12205  if (unlikely(__pyx_t_20 != -1)) {
12206  __Pyx_RaiseBufferIndexError(__pyx_t_20);
12207  __PYX_ERR(0, 553, __pyx_L1_error)
12208  }
12209  __pyx_t_21 = __pyx_v_eN;
12210  __pyx_t_22 = __pyx_v_i;
12211  __pyx_t_20 = -1;
12212  if (__pyx_t_21 < 0) {
12213  __pyx_t_21 += __pyx_pybuffernd_elementResidual.diminfo[0].shape;
12214  if (unlikely(__pyx_t_21 < 0)) __pyx_t_20 = 0;
12215  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_elementResidual.diminfo[0].shape)) __pyx_t_20 = 0;
12216  if (__pyx_t_22 < 0) {
12217  __pyx_t_22 += __pyx_pybuffernd_elementResidual.diminfo[1].shape;
12218  if (unlikely(__pyx_t_22 < 0)) __pyx_t_20 = 1;
12219  } else if (unlikely(__pyx_t_22 >= __pyx_pybuffernd_elementResidual.diminfo[1].shape)) __pyx_t_20 = 1;
12220  if (unlikely(__pyx_t_20 != -1)) {
12221  __Pyx_RaiseBufferIndexError(__pyx_t_20);
12222  __PYX_ERR(0, 553, __pyx_L1_error)
12223  }
12224  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_elementResidual.rcbuffer->pybuffer.buf, __pyx_t_21, __pyx_pybuffernd_elementResidual.diminfo[0].strides, __pyx_t_22, __pyx_pybuffernd_elementResidual.diminfo[1].strides) += (__pyx_v_weight * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_mt.rcbuffer->pybuffer.buf, __pyx_t_18, __pyx_pybuffernd_q_mt.diminfo[0].strides, __pyx_t_19, __pyx_pybuffernd_q_mt.diminfo[1].strides)));
12225 
12226  /* "subsurfaceTransportFunctions.pyx":555
12227  * elementResidual[eN,i] += weight*q_mt[eN,i]
12228  * ##sources
12229  * elementResidual[eN,i] += weight*q_r[eN,i] # <<<<<<<<<<<<<<
12230  *
12231  * #have to actually compute loop over other nodes for stiffness terms
12232  */
12233  __pyx_t_23 = __pyx_v_eN;
12234  __pyx_t_24 = __pyx_v_i;
12235  __pyx_t_20 = -1;
12236  if (__pyx_t_23 < 0) {
12237  __pyx_t_23 += __pyx_pybuffernd_q_r.diminfo[0].shape;
12238  if (unlikely(__pyx_t_23 < 0)) __pyx_t_20 = 0;
12239  } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_q_r.diminfo[0].shape)) __pyx_t_20 = 0;
12240  if (__pyx_t_24 < 0) {
12241  __pyx_t_24 += __pyx_pybuffernd_q_r.diminfo[1].shape;
12242  if (unlikely(__pyx_t_24 < 0)) __pyx_t_20 = 1;
12243  } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_q_r.diminfo[1].shape)) __pyx_t_20 = 1;
12244  if (unlikely(__pyx_t_20 != -1)) {
12245  __Pyx_RaiseBufferIndexError(__pyx_t_20);
12246  __PYX_ERR(0, 555, __pyx_L1_error)
12247  }
12248  __pyx_t_25 = __pyx_v_eN;
12249  __pyx_t_26 = __pyx_v_i;
12250  __pyx_t_20 = -1;
12251  if (__pyx_t_25 < 0) {
12252  __pyx_t_25 += __pyx_pybuffernd_elementResidual.diminfo[0].shape;
12253  if (unlikely(__pyx_t_25 < 0)) __pyx_t_20 = 0;
12254  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_elementResidual.diminfo[0].shape)) __pyx_t_20 = 0;
12255  if (__pyx_t_26 < 0) {
12256  __pyx_t_26 += __pyx_pybuffernd_elementResidual.diminfo[1].shape;
12257  if (unlikely(__pyx_t_26 < 0)) __pyx_t_20 = 1;
12258  } else if (unlikely(__pyx_t_26 >= __pyx_pybuffernd_elementResidual.diminfo[1].shape)) __pyx_t_20 = 1;
12259  if (unlikely(__pyx_t_20 != -1)) {
12260  __Pyx_RaiseBufferIndexError(__pyx_t_20);
12261  __PYX_ERR(0, 555, __pyx_L1_error)
12262  }
12263  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_elementResidual.rcbuffer->pybuffer.buf, __pyx_t_25, __pyx_pybuffernd_elementResidual.diminfo[0].strides, __pyx_t_26, __pyx_pybuffernd_elementResidual.diminfo[1].strides) += (__pyx_v_weight * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_r.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_q_r.diminfo[0].strides, __pyx_t_24, __pyx_pybuffernd_q_r.diminfo[1].strides)));
12264 
12265  /* "subsurfaceTransportFunctions.pyx":558
12266  *
12267  * #have to actually compute loop over other nodes for stiffness terms
12268  * for ebN in range(nElementBoundaries_element): #same as nDOF_trial , nElementBoundaries_ # <<<<<<<<<<<<<<
12269  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
12270  * for ii in range(nnz):
12271  */
12272  __pyx_t_20 = __pyx_v_nElementBoundaries_element;
12273  for (__pyx_t_27 = 0; __pyx_t_27 < __pyx_t_20; __pyx_t_27+=1) {
12274  __pyx_v_ebN = __pyx_t_27;
12275 
12276  /* "subsurfaceTransportFunctions.pyx":560
12277  * for ebN in range(nElementBoundaries_element): #same as nDOF_trial , nElementBoundaries_
12278  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
12279  * for ii in range(nnz): # <<<<<<<<<<<<<<
12280  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
12281  * for I in range(nSpace):
12282  */
12283  __pyx_t_28 = __pyx_v_nnz;
12284  for (__pyx_t_29 = 0; __pyx_t_29 < __pyx_t_28; __pyx_t_29+=1) {
12285  __pyx_v_ii = __pyx_t_29;
12286 
12287  /* "subsurfaceTransportFunctions.pyx":561
12288  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
12289  * for ii in range(nnz):
12290  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN] # <<<<<<<<<<<<<<
12291  * for I in range(nSpace):
12292  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN]
12293  */
12294  __pyx_t_30 = __pyx_v_eN;
12295  __pyx_t_31 = __pyx_v_ebN;
12296  __pyx_t_32 = __pyx_v_ii;
12297  __pyx_t_33 = -1;
12298  if (__pyx_t_30 < 0) {
12299  __pyx_t_30 += __pyx_pybuffernd_q_alin.diminfo[0].shape;
12300  if (unlikely(__pyx_t_30 < 0)) __pyx_t_33 = 0;
12301  } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_q_alin.diminfo[0].shape)) __pyx_t_33 = 0;
12302  if (__pyx_t_31 < 0) {
12303  __pyx_t_31 += __pyx_pybuffernd_q_alin.diminfo[1].shape;
12304  if (unlikely(__pyx_t_31 < 0)) __pyx_t_33 = 1;
12305  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_q_alin.diminfo[1].shape)) __pyx_t_33 = 1;
12306  if (__pyx_t_32 < 0) {
12307  __pyx_t_32 += __pyx_pybuffernd_q_alin.diminfo[2].shape;
12308  if (unlikely(__pyx_t_32 < 0)) __pyx_t_33 = 2;
12309  } else if (unlikely(__pyx_t_32 >= __pyx_pybuffernd_q_alin.diminfo[2].shape)) __pyx_t_33 = 2;
12310  if (unlikely(__pyx_t_33 != -1)) {
12311  __Pyx_RaiseBufferIndexError(__pyx_t_33);
12312  __PYX_ERR(0, 561, __pyx_L1_error)
12313  }
12314  __pyx_t_34 = __pyx_v_eN;
12315  __pyx_t_35 = __pyx_v_ebN;
12316  __pyx_t_33 = -1;
12317  if (__pyx_t_34 < 0) {
12318  __pyx_t_34 += __pyx_pybuffernd_q_kr_up.diminfo[0].shape;
12319  if (unlikely(__pyx_t_34 < 0)) __pyx_t_33 = 0;
12320  } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_q_kr_up.diminfo[0].shape)) __pyx_t_33 = 0;
12321  if (__pyx_t_35 < 0) {
12322  __pyx_t_35 += __pyx_pybuffernd_q_kr_up.diminfo[1].shape;
12323  if (unlikely(__pyx_t_35 < 0)) __pyx_t_33 = 1;
12324  } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_q_kr_up.diminfo[1].shape)) __pyx_t_33 = 1;
12325  if (unlikely(__pyx_t_33 != -1)) {
12326  __Pyx_RaiseBufferIndexError(__pyx_t_33);
12327  __PYX_ERR(0, 561, __pyx_L1_error)
12328  }
12329  __pyx_t_36 = __pyx_v_ii;
12330  __pyx_t_33 = -1;
12331  if (__pyx_t_36 < 0) {
12332  __pyx_t_36 += __pyx_pybuffernd_a_up.diminfo[0].shape;
12333  if (unlikely(__pyx_t_36 < 0)) __pyx_t_33 = 0;
12334  } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_a_up.diminfo[0].shape)) __pyx_t_33 = 0;
12335  if (unlikely(__pyx_t_33 != -1)) {
12336  __Pyx_RaiseBufferIndexError(__pyx_t_33);
12337  __PYX_ERR(0, 561, __pyx_L1_error)
12338  }
12339  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_up.rcbuffer->pybuffer.buf, __pyx_t_36, __pyx_pybuffernd_a_up.diminfo[0].strides) = ((*__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_alin.rcbuffer->pybuffer.buf, __pyx_t_30, __pyx_pybuffernd_q_alin.diminfo[0].strides, __pyx_t_31, __pyx_pybuffernd_q_alin.diminfo[1].strides, __pyx_t_32, __pyx_pybuffernd_q_alin.diminfo[2].strides)) * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.buf, __pyx_t_34, __pyx_pybuffernd_q_kr_up.diminfo[0].strides, __pyx_t_35, __pyx_pybuffernd_q_kr_up.diminfo[1].strides)));
12340  }
12341 
12342  /* "subsurfaceTransportFunctions.pyx":562
12343  * for ii in range(nnz):
12344  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
12345  * for I in range(nSpace): # <<<<<<<<<<<<<<
12346  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN]
12347  * #
12348  */
12349  __pyx_t_28 = __pyx_v_nSpace;
12350  for (__pyx_t_29 = 0; __pyx_t_29 < __pyx_t_28; __pyx_t_29+=1) {
12351  __pyx_v_I = __pyx_t_29;
12352 
12353  /* "subsurfaceTransportFunctions.pyx":563
12354  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
12355  * for I in range(nSpace):
12356  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN] # <<<<<<<<<<<<<<
12357  * #
12358  * #accumulate advection and stiffness contributions
12359  */
12360  __pyx_t_37 = __pyx_v_eN;
12361  __pyx_t_38 = __pyx_v_ebN;
12362  __pyx_t_39 = __pyx_v_I;
12363  __pyx_t_33 = -1;
12364  if (__pyx_t_37 < 0) {
12365  __pyx_t_37 += __pyx_pybuffernd_q_flin.diminfo[0].shape;
12366  if (unlikely(__pyx_t_37 < 0)) __pyx_t_33 = 0;
12367  } else if (unlikely(__pyx_t_37 >= __pyx_pybuffernd_q_flin.diminfo[0].shape)) __pyx_t_33 = 0;
12368  if (__pyx_t_38 < 0) {
12369  __pyx_t_38 += __pyx_pybuffernd_q_flin.diminfo[1].shape;
12370  if (unlikely(__pyx_t_38 < 0)) __pyx_t_33 = 1;
12371  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_q_flin.diminfo[1].shape)) __pyx_t_33 = 1;
12372  if (__pyx_t_39 < 0) {
12373  __pyx_t_39 += __pyx_pybuffernd_q_flin.diminfo[2].shape;
12374  if (unlikely(__pyx_t_39 < 0)) __pyx_t_33 = 2;
12375  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_q_flin.diminfo[2].shape)) __pyx_t_33 = 2;
12376  if (unlikely(__pyx_t_33 != -1)) {
12377  __Pyx_RaiseBufferIndexError(__pyx_t_33);
12378  __PYX_ERR(0, 563, __pyx_L1_error)
12379  }
12380  __pyx_t_40 = __pyx_v_eN;
12381  __pyx_t_41 = __pyx_v_ebN;
12382  __pyx_t_33 = -1;
12383  if (__pyx_t_40 < 0) {
12384  __pyx_t_40 += __pyx_pybuffernd_q_kr_up.diminfo[0].shape;
12385  if (unlikely(__pyx_t_40 < 0)) __pyx_t_33 = 0;
12386  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_q_kr_up.diminfo[0].shape)) __pyx_t_33 = 0;
12387  if (__pyx_t_41 < 0) {
12388  __pyx_t_41 += __pyx_pybuffernd_q_kr_up.diminfo[1].shape;
12389  if (unlikely(__pyx_t_41 < 0)) __pyx_t_33 = 1;
12390  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_q_kr_up.diminfo[1].shape)) __pyx_t_33 = 1;
12391  if (unlikely(__pyx_t_33 != -1)) {
12392  __Pyx_RaiseBufferIndexError(__pyx_t_33);
12393  __PYX_ERR(0, 563, __pyx_L1_error)
12394  }
12395  __pyx_t_42 = __pyx_v_I;
12396  __pyx_t_33 = -1;
12397  if (__pyx_t_42 < 0) {
12398  __pyx_t_42 += __pyx_pybuffernd_f_up.diminfo[0].shape;
12399  if (unlikely(__pyx_t_42 < 0)) __pyx_t_33 = 0;
12400  } else if (unlikely(__pyx_t_42 >= __pyx_pybuffernd_f_up.diminfo[0].shape)) __pyx_t_33 = 0;
12401  if (unlikely(__pyx_t_33 != -1)) {
12402  __Pyx_RaiseBufferIndexError(__pyx_t_33);
12403  __PYX_ERR(0, 563, __pyx_L1_error)
12404  }
12405  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_f_up.rcbuffer->pybuffer.buf, __pyx_t_42, __pyx_pybuffernd_f_up.diminfo[0].strides) = ((*__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_flin.rcbuffer->pybuffer.buf, __pyx_t_37, __pyx_pybuffernd_q_flin.diminfo[0].strides, __pyx_t_38, __pyx_pybuffernd_q_flin.diminfo[1].strides, __pyx_t_39, __pyx_pybuffernd_q_flin.diminfo[2].strides)) * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.buf, __pyx_t_40, __pyx_pybuffernd_q_kr_up.diminfo[0].strides, __pyx_t_41, __pyx_pybuffernd_q_kr_up.diminfo[1].strides)));
12406  }
12407 
12408  /* "subsurfaceTransportFunctions.pyx":566
12409  * #
12410  * #accumulate advection and stiffness contributions
12411  * for I in range(nSpace): # <<<<<<<<<<<<<<
12412  * elementResidual[eN,i] -= weight*f_up[I]*q_grad_w[eN,ebN,i,I]
12413  * for ii in range(rowptr[I],rowptr[I+1]):
12414  */
12415  __pyx_t_28 = __pyx_v_nSpace;
12416  for (__pyx_t_29 = 0; __pyx_t_29 < __pyx_t_28; __pyx_t_29+=1) {
12417  __pyx_v_I = __pyx_t_29;
12418 
12419  /* "subsurfaceTransportFunctions.pyx":567
12420  * #accumulate advection and stiffness contributions
12421  * for I in range(nSpace):
12422  * elementResidual[eN,i] -= weight*f_up[I]*q_grad_w[eN,ebN,i,I] # <<<<<<<<<<<<<<
12423  * for ii in range(rowptr[I],rowptr[I+1]):
12424  * elementResidual[eN,i] += weight*a_up[ii]*q_grad_u[eN,ebN,colind[ii]]*q_grad_w[eN,ebN,i,I]
12425  */
12426  __pyx_t_43 = __pyx_v_I;
12427  __pyx_t_33 = -1;
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12604  * #eN for upwind
12605  *
12606  * def RE_NCP1_getElementResidual(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
12607  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
12608  * numpy.ndarray[ITYPE_t,ndim=1] colind,
12609  */
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12676 /* "subsurfaceTransportFunctions.pyx":574
12677  * #i
12678  * #eN
12679  * def RE_NCP1_getElementJacobian(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
12680  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
12681  * numpy.ndarray[ITYPE_t,ndim=1] colind,
12682  */
12683 
12684 /* Python wrapper */
12685 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
12686 static char __pyx_doc_28subsurfaceTransportFunctions_34RE_NCP1_getElementJacobian[] = "\n residual routine for NCP1 approximation for conservative head formulation of Richards equation \n\n Approximation:\n uses nodal quadrature where the nodes are face barycenters\n uses harmonic average for intrinsic permeability/ hydraulic conductivity\n upwinds relative permeability based on element averages\n applies dirichlet boundary conditions strongly but keeps dofs in system\n\n TODO:\n everything\n \n ";
12687 static PyMethodDef __pyx_mdef_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian = {"RE_NCP1_getElementJacobian", (PyCFunction)__pyx_pw_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian, METH_VARARGS|METH_KEYWORDS, __pyx_doc_28subsurfaceTransportFunctions_34RE_NCP1_getElementJacobian};
12688 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
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12691  PyArrayObject *__pyx_v_colind = 0;
12692  int __pyx_v_nSpace;
12693  int __pyx_v_nElements_global;
12694  int __pyx_v_nElementBoundaries_element;
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12696  CYTHON_UNUSED PyArrayObject *__pyx_v_elementBarycentersArray = 0;
12697  int __pyx_v_nDOF_test_element;
12698  int __pyx_v_nDOF_trial_element;
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12703  PyArrayObject *__pyx_v_q_detJ = 0;
12704  PyArrayObject *__pyx_v_q_m = 0;
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12706  PyArrayObject *__pyx_v_q_mt = 0;
12707  PyArrayObject *__pyx_v_q_dmt = 0;
12708  PyArrayObject *__pyx_v_q_r = 0;
12709  PyArrayObject *__pyx_v_q_kr = 0;
12710  CYTHON_UNUSED PyArrayObject *__pyx_v_q_dkr = 0;
12711  PyArrayObject *__pyx_v_q_kr_up = 0;
12712  PyArrayObject *__pyx_v_q_flin = 0;
12713  PyArrayObject *__pyx_v_q_alin = 0;
12714  PyArrayObject *__pyx_v_elementJacobian = 0;
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12716  __Pyx_RefNannyDeclarations
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12718  {
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12720  PyObject* values[26] = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
12721  if (unlikely(__pyx_kwds)) {
12722  Py_ssize_t kw_args;
12723  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
12724  switch (pos_args) {
12725  case 26: values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
12726  case 25: values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
12727  case 24: values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
12728  case 23: values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
12729  case 22: values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
12730  case 21: values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
12731  case 20: values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
12732  case 19: values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
12733  case 18: values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
12734  case 17: values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
12735  case 16: values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
12736  case 15: values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
12737  case 14: values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
12738  case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
12739  case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
12740  case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
12741  case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
12742  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
12743  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
12744  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
12745  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
12746  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
12747  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
12748  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
12749  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
12750  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
12751  case 0: break;
12752  default: goto __pyx_L5_argtuple_error;
12753  }
12754  kw_args = PyDict_Size(__pyx_kwds);
12755  switch (pos_args) {
12756  case 0:
12757  if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gravity)) != 0)) kw_args--;
12758  else goto __pyx_L5_argtuple_error;
12759  case 1:
12760  if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_rowptr)) != 0)) kw_args--;
12761  else {
12762  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 1); __PYX_ERR(0, 574, __pyx_L3_error)
12763  }
12764  case 2:
12765  if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_colind)) != 0)) kw_args--;
12766  else {
12767  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 2); __PYX_ERR(0, 574, __pyx_L3_error)
12768  }
12769  case 3:
12770  if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nSpace)) != 0)) kw_args--;
12771  else {
12772  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 3); __PYX_ERR(0, 574, __pyx_L3_error)
12773  }
12774  case 4:
12775  if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nElements_global)) != 0)) kw_args--;
12776  else {
12777  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 4); __PYX_ERR(0, 574, __pyx_L3_error)
12778  }
12779  case 5:
12780  if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nElementBoundaries_element)) != 0)) kw_args--;
12781  else {
12782  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 5); __PYX_ERR(0, 574, __pyx_L3_error)
12783  }
12784  case 6:
12785  if (likely((values[6] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementNeighborsArray)) != 0)) kw_args--;
12786  else {
12787  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 6); __PYX_ERR(0, 574, __pyx_L3_error)
12788  }
12789  case 7:
12790  if (likely((values[7] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementBarycentersArray)) != 0)) kw_args--;
12791  else {
12792  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 7); __PYX_ERR(0, 574, __pyx_L3_error)
12793  }
12794  case 8:
12795  if (likely((values[8] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nDOF_test_element)) != 0)) kw_args--;
12796  else {
12797  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 8); __PYX_ERR(0, 574, __pyx_L3_error)
12798  }
12799  case 9:
12800  if (likely((values[9] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nDOF_trial_element)) != 0)) kw_args--;
12801  else {
12802  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 9); __PYX_ERR(0, 574, __pyx_L3_error)
12803  }
12804  case 10:
12805  if (likely((values[10] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_u)) != 0)) kw_args--;
12806  else {
12807  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 10); __PYX_ERR(0, 574, __pyx_L3_error)
12808  }
12809  case 11:
12810  if (likely((values[11] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_grad_u)) != 0)) kw_args--;
12811  else {
12812  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 11); __PYX_ERR(0, 574, __pyx_L3_error)
12813  }
12814  case 12:
12815  if (likely((values[12] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_grad_w)) != 0)) kw_args--;
12816  else {
12817  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 12); __PYX_ERR(0, 574, __pyx_L3_error)
12818  }
12819  case 13:
12820  if (likely((values[13] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_grad_v)) != 0)) kw_args--;
12821  else {
12822  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 13); __PYX_ERR(0, 574, __pyx_L3_error)
12823  }
12824  case 14:
12825  if (likely((values[14] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_detJ)) != 0)) kw_args--;
12826  else {
12827  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 14); __PYX_ERR(0, 574, __pyx_L3_error)
12828  }
12829  case 15:
12830  if (likely((values[15] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_m)) != 0)) kw_args--;
12831  else {
12832  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 15); __PYX_ERR(0, 574, __pyx_L3_error)
12833  }
12834  case 16:
12835  if (likely((values[16] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_dm)) != 0)) kw_args--;
12836  else {
12837  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 16); __PYX_ERR(0, 574, __pyx_L3_error)
12838  }
12839  case 17:
12840  if (likely((values[17] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_mt)) != 0)) kw_args--;
12841  else {
12842  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 17); __PYX_ERR(0, 574, __pyx_L3_error)
12843  }
12844  case 18:
12845  if (likely((values[18] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_dmt)) != 0)) kw_args--;
12846  else {
12847  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 18); __PYX_ERR(0, 574, __pyx_L3_error)
12848  }
12849  case 19:
12850  if (likely((values[19] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_r)) != 0)) kw_args--;
12851  else {
12852  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 19); __PYX_ERR(0, 574, __pyx_L3_error)
12853  }
12854  case 20:
12855  if (likely((values[20] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_kr)) != 0)) kw_args--;
12856  else {
12857  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 20); __PYX_ERR(0, 574, __pyx_L3_error)
12858  }
12859  case 21:
12860  if (likely((values[21] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_dkr)) != 0)) kw_args--;
12861  else {
12862  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 21); __PYX_ERR(0, 574, __pyx_L3_error)
12863  }
12864  case 22:
12865  if (likely((values[22] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_kr_up)) != 0)) kw_args--;
12866  else {
12867  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 22); __PYX_ERR(0, 574, __pyx_L3_error)
12868  }
12869  case 23:
12870  if (likely((values[23] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_flin)) != 0)) kw_args--;
12871  else {
12872  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 23); __PYX_ERR(0, 574, __pyx_L3_error)
12873  }
12874  case 24:
12875  if (likely((values[24] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_alin)) != 0)) kw_args--;
12876  else {
12877  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 24); __PYX_ERR(0, 574, __pyx_L3_error)
12878  }
12879  case 25:
12880  if (likely((values[25] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementJacobian)) != 0)) kw_args--;
12881  else {
12882  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 25); __PYX_ERR(0, 574, __pyx_L3_error)
12883  }
12884  }
12885  if (unlikely(kw_args > 0)) {
12886  if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "RE_NCP1_getElementJacobian") < 0)) __PYX_ERR(0, 574, __pyx_L3_error)
12887  }
12888  } else if (PyTuple_GET_SIZE(__pyx_args) != 26) {
12889  goto __pyx_L5_argtuple_error;
12890  } else {
12891  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
12892  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
12893  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
12894  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
12895  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
12896  values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
12897  values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
12898  values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
12899  values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
12900  values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
12901  values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
12902  values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
12903  values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
12904  values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
12905  values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
12906  values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
12907  values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
12908  values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
12909  values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
12910  values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
12911  values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
12912  values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
12913  values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
12914  values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
12915  values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
12916  values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
12917  }
12918  __pyx_v_gravity = ((PyArrayObject *)values[0]);
12919  __pyx_v_rowptr = ((PyArrayObject *)values[1]);
12920  __pyx_v_colind = ((PyArrayObject *)values[2]);
12921  __pyx_v_nSpace = __Pyx_PyInt_As_int(values[3]); if (unlikely((__pyx_v_nSpace == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 578, __pyx_L3_error)
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12934  __pyx_v_q_dm = ((PyArrayObject *)values[16]);
12935  __pyx_v_q_mt = ((PyArrayObject *)values[17]);
12936  __pyx_v_q_dmt = ((PyArrayObject *)values[18]);
12937  __pyx_v_q_r = ((PyArrayObject *)values[19]);
12938  __pyx_v_q_kr = ((PyArrayObject *)values[20]);
12939  __pyx_v_q_dkr = ((PyArrayObject *)values[21]);
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12945  goto __pyx_L4_argument_unpacking_done;
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12955  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_colind), __pyx_ptype_5numpy_ndarray, 1, "colind", 0))) __PYX_ERR(0, 576, __pyx_L1_error)
12956  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_elementNeighborsArray), __pyx_ptype_5numpy_ndarray, 1, "elementNeighborsArray", 0))) __PYX_ERR(0, 581, __pyx_L1_error)
12957  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_elementBarycentersArray), __pyx_ptype_5numpy_ndarray, 1, "elementBarycentersArray", 0))) __PYX_ERR(0, 582, __pyx_L1_error)
12958  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_u), __pyx_ptype_5numpy_ndarray, 1, "q_u", 0))) __PYX_ERR(0, 586, __pyx_L1_error)
12959  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_grad_u), __pyx_ptype_5numpy_ndarray, 1, "q_grad_u", 0))) __PYX_ERR(0, 587, __pyx_L1_error)
12960  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_grad_w), __pyx_ptype_5numpy_ndarray, 1, "q_grad_w", 0))) __PYX_ERR(0, 588, __pyx_L1_error)
12961  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_grad_v), __pyx_ptype_5numpy_ndarray, 1, "q_grad_v", 0))) __PYX_ERR(0, 589, __pyx_L1_error)
12962  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_detJ), __pyx_ptype_5numpy_ndarray, 1, "q_detJ", 0))) __PYX_ERR(0, 591, __pyx_L1_error)
12963  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_m), __pyx_ptype_5numpy_ndarray, 1, "q_m", 0))) __PYX_ERR(0, 592, __pyx_L1_error)
12964  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_dm), __pyx_ptype_5numpy_ndarray, 1, "q_dm", 0))) __PYX_ERR(0, 593, __pyx_L1_error)
12965  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_mt), __pyx_ptype_5numpy_ndarray, 1, "q_mt", 0))) __PYX_ERR(0, 594, __pyx_L1_error)
12966  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_dmt), __pyx_ptype_5numpy_ndarray, 1, "q_dmt", 0))) __PYX_ERR(0, 595, __pyx_L1_error)
12967  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_r), __pyx_ptype_5numpy_ndarray, 1, "q_r", 0))) __PYX_ERR(0, 596, __pyx_L1_error)
12968  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_kr), __pyx_ptype_5numpy_ndarray, 1, "q_kr", 0))) __PYX_ERR(0, 597, __pyx_L1_error)
12969  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_dkr), __pyx_ptype_5numpy_ndarray, 1, "q_dkr", 0))) __PYX_ERR(0, 598, __pyx_L1_error)
12970  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_q_kr_up), __pyx_ptype_5numpy_ndarray, 1, "q_kr_up", 0))) __PYX_ERR(0, 599, __pyx_L1_error)
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13309  *
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13317  /* "subsurfaceTransportFunctions.pyx":621
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13345  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_r));
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13402  * for q in [q_u,q_m,q_mt,q_r,q_kr]:
13403  * assert q.shape[1] == nSpace+1
13404  * assert nDOF_test_element == nSpace+1 # <<<<<<<<<<<<<<
13405  * cdef int nnz = rowptr[nSpace]
13406  * #temporaries
13407  */
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13418  * assert q.shape[1] == nSpace+1
13419  * assert nDOF_test_element == nSpace+1
13420  * cdef int nnz = rowptr[nSpace] # <<<<<<<<<<<<<<
13421  * #temporaries
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13435 
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13437  * cdef double u_eN,kr_eN,phi_eN,u_neig,kr_neig,phi_neig,dkr_up
13438  * cdef int eN,eN_neighbor,ii,I
13439  * cdef numpy.ndarray[DTYPE_t,ndim=1] a_up= numpy.zeros(nnz,'d') # <<<<<<<<<<<<<<
13440  * cdef numpy.ndarray[DTYPE_t,ndim=1] f_up= numpy.zeros(nSpace,'d')
13441  * #for averaging/integration weights
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13486  __Pyx_GIVEREF(__pyx_t_5);
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13512  * cdef int eN,eN_neighbor,ii,I
13513  * cdef numpy.ndarray[DTYPE_t,ndim=1] a_up= numpy.zeros(nnz,'d')
13514  * cdef numpy.ndarray[DTYPE_t,ndim=1] f_up= numpy.zeros(nSpace,'d') # <<<<<<<<<<<<<<
13515  * #for averaging/integration weights
13516  * cdef double nAvgWeight = 1.0/(nSpace+1.)
13517  */
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13522  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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13524  __Pyx_GOTREF(__pyx_t_1);
13525  __pyx_t_5 = NULL;
13526  __pyx_t_8 = 0;
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13532  __Pyx_INCREF(function);
13533  __Pyx_DECREF_SET(__pyx_t_9, function);
13534  __pyx_t_8 = 1;
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13561  __Pyx_GIVEREF(__pyx_t_1);
13562  PyTuple_SET_ITEM(__pyx_t_4, 0+__pyx_t_8, __pyx_t_1);
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13564  __Pyx_GIVEREF(__pyx_n_s_d);
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13566  __pyx_t_1 = 0;
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13587  * cdef numpy.ndarray[DTYPE_t,ndim=1] f_up= numpy.zeros(nSpace,'d')
13588  * #for averaging/integration weights
13589  * cdef double nAvgWeight = 1.0/(nSpace+1.) # <<<<<<<<<<<<<<
13590  * cdef double weight=1.0,volFactor = 1.0
13591  * cdef int thisElementIsUpwind = 1
13592  */
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13594  if (unlikely(__pyx_t_12 == 0)) {
13595  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
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13599 
13600  /* "subsurfaceTransportFunctions.pyx":634
13601  * #for averaging/integration weights
13602  * cdef double nAvgWeight = 1.0/(nSpace+1.)
13603  * cdef double weight=1.0,volFactor = 1.0 # <<<<<<<<<<<<<<
13604  * cdef int thisElementIsUpwind = 1
13605  * if nSpace == 2:
13606  */
13607  __pyx_v_weight = 1.0;
13608  __pyx_v_volFactor = 1.0;
13609 
13610  /* "subsurfaceTransportFunctions.pyx":635
13611  * cdef double nAvgWeight = 1.0/(nSpace+1.)
13612  * cdef double weight=1.0,volFactor = 1.0
13613  * cdef int thisElementIsUpwind = 1 # <<<<<<<<<<<<<<
13614  * if nSpace == 2:
13615  * volFactor = 0.5
13616  */
13617  __pyx_v_thisElementIsUpwind = 1;
13618 
13619  /* "subsurfaceTransportFunctions.pyx":636
13620  * cdef double weight=1.0,volFactor = 1.0
13621  * cdef int thisElementIsUpwind = 1
13622  * if nSpace == 2: # <<<<<<<<<<<<<<
13623  * volFactor = 0.5
13624  * if nSpace == 3:
13625  */
13626  __pyx_t_6 = ((__pyx_v_nSpace == 2) != 0);
13627  if (__pyx_t_6) {
13628 
13629  /* "subsurfaceTransportFunctions.pyx":637
13630  * cdef int thisElementIsUpwind = 1
13631  * if nSpace == 2:
13632  * volFactor = 0.5 # <<<<<<<<<<<<<<
13633  * if nSpace == 3:
13634  * volFactor = 1.0/6.0
13635  */
13636  __pyx_v_volFactor = 0.5;
13637 
13638  /* "subsurfaceTransportFunctions.pyx":636
13639  * cdef double weight=1.0,volFactor = 1.0
13640  * cdef int thisElementIsUpwind = 1
13641  * if nSpace == 2: # <<<<<<<<<<<<<<
13642  * volFactor = 0.5
13643  * if nSpace == 3:
13644  */
13645  }
13646 
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13648  * if nSpace == 2:
13649  * volFactor = 0.5
13650  * if nSpace == 3: # <<<<<<<<<<<<<<
13651  * volFactor = 1.0/6.0
13652  * #
13653  */
13654  __pyx_t_6 = ((__pyx_v_nSpace == 3) != 0);
13655  if (__pyx_t_6) {
13656 
13657  /* "subsurfaceTransportFunctions.pyx":639
13658  * volFactor = 0.5
13659  * if nSpace == 3:
13660  * volFactor = 1.0/6.0 # <<<<<<<<<<<<<<
13661  * #
13662  * for eN in range(nElements_global):
13663  */
13664  __pyx_v_volFactor = (1.0 / 6.0);
13665 
13666  /* "subsurfaceTransportFunctions.pyx":638
13667  * if nSpace == 2:
13668  * volFactor = 0.5
13669  * if nSpace == 3: # <<<<<<<<<<<<<<
13670  * volFactor = 1.0/6.0
13671  * #
13672  */
13673  }
13674 
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13676  * volFactor = 1.0/6.0
13677  * #
13678  * for eN in range(nElements_global): # <<<<<<<<<<<<<<
13679  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation
13680  * weight = nAvgWeight*volume
13681  */
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13685 
13686  /* "subsurfaceTransportFunctions.pyx":642
13687  * #
13688  * for eN in range(nElements_global):
13689  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation # <<<<<<<<<<<<<<
13690  * weight = nAvgWeight*volume
13691  *
13692  */
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13700  if (__pyx_t_15 < 0) {
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13709 
13710  /* "subsurfaceTransportFunctions.pyx":643
13711  * for eN in range(nElements_global):
13712  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation
13713  * weight = nAvgWeight*volume # <<<<<<<<<<<<<<
13714  *
13715  *
13716  */
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13718 
13719  /* "subsurfaceTransportFunctions.pyx":646
13720  *
13721  *
13722  * for i in range(nDOF_test_element): # <<<<<<<<<<<<<<
13723  * #nodal quadrature so diagonal
13724  * ##mass
13725  */
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13727  for (__pyx_t_17 = 0; __pyx_t_17 < __pyx_t_16; __pyx_t_17+=1) {
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13729 
13730  /* "subsurfaceTransportFunctions.pyx":650
13731  * ##mass
13732  * #elementResidual[eN,i] += weight*q_m[eN,i]
13733  * elementJacobian[eN,i,i] += weight*q_dmt[eN,i] # <<<<<<<<<<<<<<
13734  *
13735  * #have to actually compute loop over other nodes for stiffness terms
13736  */
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13738  __pyx_t_19 = __pyx_v_i;
13739  __pyx_t_20 = -1;
13740  if (__pyx_t_18 < 0) {
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13743  } else if (unlikely(__pyx_t_18 >= __pyx_pybuffernd_q_dmt.diminfo[0].shape)) __pyx_t_20 = 0;
13744  if (__pyx_t_19 < 0) {
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13746  if (unlikely(__pyx_t_19 < 0)) __pyx_t_20 = 1;
13747  } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_q_dmt.diminfo[1].shape)) __pyx_t_20 = 1;
13748  if (unlikely(__pyx_t_20 != -1)) {
13749  __Pyx_RaiseBufferIndexError(__pyx_t_20);
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13753  __pyx_t_22 = __pyx_v_i;
13754  __pyx_t_23 = __pyx_v_i;
13755  __pyx_t_20 = -1;
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13757  __pyx_t_21 += __pyx_pybuffernd_elementJacobian.diminfo[0].shape;
13758  if (unlikely(__pyx_t_21 < 0)) __pyx_t_20 = 0;
13759  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_elementJacobian.diminfo[0].shape)) __pyx_t_20 = 0;
13760  if (__pyx_t_22 < 0) {
13761  __pyx_t_22 += __pyx_pybuffernd_elementJacobian.diminfo[1].shape;
13762  if (unlikely(__pyx_t_22 < 0)) __pyx_t_20 = 1;
13763  } else if (unlikely(__pyx_t_22 >= __pyx_pybuffernd_elementJacobian.diminfo[1].shape)) __pyx_t_20 = 1;
13764  if (__pyx_t_23 < 0) {
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13766  if (unlikely(__pyx_t_23 < 0)) __pyx_t_20 = 2;
13767  } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_elementJacobian.diminfo[2].shape)) __pyx_t_20 = 2;
13768  if (unlikely(__pyx_t_20 != -1)) {
13769  __Pyx_RaiseBufferIndexError(__pyx_t_20);
13770  __PYX_ERR(0, 650, __pyx_L1_error)
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13773 
13774  /* "subsurfaceTransportFunctions.pyx":653
13775  *
13776  * #have to actually compute loop over other nodes for stiffness terms
13777  * for ebN in range(nElementBoundaries_element): #same as nDOF_trial , nElementBoundaries_ # <<<<<<<<<<<<<<
13778  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
13779  * for ii in range(nnz):
13780  */
13781  __pyx_t_20 = __pyx_v_nElementBoundaries_element;
13782  for (__pyx_t_24 = 0; __pyx_t_24 < __pyx_t_20; __pyx_t_24+=1) {
13783  __pyx_v_ebN = __pyx_t_24;
13784 
13785  /* "subsurfaceTransportFunctions.pyx":655
13786  * for ebN in range(nElementBoundaries_element): #same as nDOF_trial , nElementBoundaries_
13787  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
13788  * for ii in range(nnz): # <<<<<<<<<<<<<<
13789  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
13790  * for I in range(nSpace):
13791  */
13792  __pyx_t_25 = __pyx_v_nnz;
13793  for (__pyx_t_26 = 0; __pyx_t_26 < __pyx_t_25; __pyx_t_26+=1) {
13794  __pyx_v_ii = __pyx_t_26;
13795 
13796  /* "subsurfaceTransportFunctions.pyx":656
13797  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
13798  * for ii in range(nnz):
13799  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN] # <<<<<<<<<<<<<<
13800  * for I in range(nSpace):
13801  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN]
13802  */
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13804  __pyx_t_28 = __pyx_v_ebN;
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13806  __pyx_t_30 = -1;
13807  if (__pyx_t_27 < 0) {
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13809  if (unlikely(__pyx_t_27 < 0)) __pyx_t_30 = 0;
13810  } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_q_alin.diminfo[0].shape)) __pyx_t_30 = 0;
13811  if (__pyx_t_28 < 0) {
13812  __pyx_t_28 += __pyx_pybuffernd_q_alin.diminfo[1].shape;
13813  if (unlikely(__pyx_t_28 < 0)) __pyx_t_30 = 1;
13814  } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_q_alin.diminfo[1].shape)) __pyx_t_30 = 1;
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13819  if (unlikely(__pyx_t_30 != -1)) {
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13825  __pyx_t_30 = -1;
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13827  __pyx_t_31 += __pyx_pybuffernd_q_kr_up.diminfo[0].shape;
13828  if (unlikely(__pyx_t_31 < 0)) __pyx_t_30 = 0;
13829  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_q_kr_up.diminfo[0].shape)) __pyx_t_30 = 0;
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13832  if (unlikely(__pyx_t_32 < 0)) __pyx_t_30 = 1;
13833  } else if (unlikely(__pyx_t_32 >= __pyx_pybuffernd_q_kr_up.diminfo[1].shape)) __pyx_t_30 = 1;
13834  if (unlikely(__pyx_t_30 != -1)) {
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13840  if (__pyx_t_33 < 0) {
13841  __pyx_t_33 += __pyx_pybuffernd_a_up.diminfo[0].shape;
13842  if (unlikely(__pyx_t_33 < 0)) __pyx_t_30 = 0;
13843  } else if (unlikely(__pyx_t_33 >= __pyx_pybuffernd_a_up.diminfo[0].shape)) __pyx_t_30 = 0;
13844  if (unlikely(__pyx_t_30 != -1)) {
13845  __Pyx_RaiseBufferIndexError(__pyx_t_30);
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13849  }
13850 
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13852  * for ii in range(nnz):
13853  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
13854  * for I in range(nSpace): # <<<<<<<<<<<<<<
13855  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN]
13856  * #
13857  */
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13860  __pyx_v_I = __pyx_t_26;
13861 
13862  /* "subsurfaceTransportFunctions.pyx":658
13863  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
13864  * for I in range(nSpace):
13865  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN] # <<<<<<<<<<<<<<
13866  * #
13867  *
13868  */
13869  __pyx_t_34 = __pyx_v_eN;
13870  __pyx_t_35 = __pyx_v_ebN;
13871  __pyx_t_36 = __pyx_v_I;
13872  __pyx_t_30 = -1;
13873  if (__pyx_t_34 < 0) {
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13875  if (unlikely(__pyx_t_34 < 0)) __pyx_t_30 = 0;
13876  } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_q_flin.diminfo[0].shape)) __pyx_t_30 = 0;
13877  if (__pyx_t_35 < 0) {
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13880  } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_q_flin.diminfo[1].shape)) __pyx_t_30 = 1;
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13901  __Pyx_RaiseBufferIndexError(__pyx_t_30);
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13905  __pyx_t_30 = -1;
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13907  __pyx_t_39 += __pyx_pybuffernd_f_up.diminfo[0].shape;
13908  if (unlikely(__pyx_t_39 < 0)) __pyx_t_30 = 0;
13909  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_f_up.diminfo[0].shape)) __pyx_t_30 = 0;
13910  if (unlikely(__pyx_t_30 != -1)) {
13911  __Pyx_RaiseBufferIndexError(__pyx_t_30);
13912  __PYX_ERR(0, 658, __pyx_L1_error)
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13914  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_f_up.rcbuffer->pybuffer.buf, __pyx_t_39, __pyx_pybuffernd_f_up.diminfo[0].strides) = ((*__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_flin.rcbuffer->pybuffer.buf, __pyx_t_34, __pyx_pybuffernd_q_flin.diminfo[0].strides, __pyx_t_35, __pyx_pybuffernd_q_flin.diminfo[1].strides, __pyx_t_36, __pyx_pybuffernd_q_flin.diminfo[2].strides)) * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.buf, __pyx_t_37, __pyx_pybuffernd_q_kr_up.diminfo[0].strides, __pyx_t_38, __pyx_pybuffernd_q_kr_up.diminfo[1].strides)));
13915  }
13916 
13917  /* "subsurfaceTransportFunctions.pyx":662
13918  *
13919  * #Picard part first
13920  * for j in range(nDOF_trial_element): # <<<<<<<<<<<<<<
13921  * for I in range(nSpace):
13922  * for ii in range(rowptr[I],rowptr[I+1]):
13923  */
13924  __pyx_t_25 = __pyx_v_nDOF_trial_element;
13925  for (__pyx_t_26 = 0; __pyx_t_26 < __pyx_t_25; __pyx_t_26+=1) {
13926  __pyx_v_j = __pyx_t_26;
13927 
13928  /* "subsurfaceTransportFunctions.pyx":663
13929  * #Picard part first
13930  * for j in range(nDOF_trial_element):
13931  * for I in range(nSpace): # <<<<<<<<<<<<<<
13932  * for ii in range(rowptr[I],rowptr[I+1]):
13933  * elementJacobian[eN,i,j] += weight*a_up[ii]*q_grad_v[eN,ebN,j,colind[ii]]*q_grad_w[eN,ebN,i,I]
13934  */
13935  __pyx_t_30 = __pyx_v_nSpace;
13936  for (__pyx_t_40 = 0; __pyx_t_40 < __pyx_t_30; __pyx_t_40+=1) {
13937  __pyx_v_I = __pyx_t_40;
13938 
13939  /* "subsurfaceTransportFunctions.pyx":664
13940  * for j in range(nDOF_trial_element):
13941  * for I in range(nSpace):
13942  * for ii in range(rowptr[I],rowptr[I+1]): # <<<<<<<<<<<<<<
13943  * elementJacobian[eN,i,j] += weight*a_up[ii]*q_grad_v[eN,ebN,j,colind[ii]]*q_grad_w[eN,ebN,i,I]
13944  * #j picard
13945  */
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13947  __pyx_t_42 = -1;
13948  if (__pyx_t_41 < 0) {
13949  __pyx_t_41 += __pyx_pybuffernd_rowptr.diminfo[0].shape;
13950  if (unlikely(__pyx_t_41 < 0)) __pyx_t_42 = 0;
13951  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_rowptr.diminfo[0].shape)) __pyx_t_42 = 0;
13952  if (unlikely(__pyx_t_42 != -1)) {
13953  __Pyx_RaiseBufferIndexError(__pyx_t_42);
13954  __PYX_ERR(0, 664, __pyx_L1_error)
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13957  __pyx_t_44 = __pyx_v_I;
13958  __pyx_t_42 = -1;
13959  if (__pyx_t_44 < 0) {
13960  __pyx_t_44 += __pyx_pybuffernd_rowptr.diminfo[0].shape;
13961  if (unlikely(__pyx_t_44 < 0)) __pyx_t_42 = 0;
13962  } else if (unlikely(__pyx_t_44 >= __pyx_pybuffernd_rowptr.diminfo[0].shape)) __pyx_t_42 = 0;
13963  if (unlikely(__pyx_t_42 != -1)) {
13964  __Pyx_RaiseBufferIndexError(__pyx_t_42);
13965  __PYX_ERR(0, 664, __pyx_L1_error)
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13967  for (__pyx_t_42 = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_rowptr.rcbuffer->pybuffer.buf, __pyx_t_44, __pyx_pybuffernd_rowptr.diminfo[0].strides)); __pyx_t_42 < __pyx_t_43; __pyx_t_42+=1) {
13968  __pyx_v_ii = __pyx_t_42;
13969 
13970  /* "subsurfaceTransportFunctions.pyx":665
13971  * for I in range(nSpace):
13972  * for ii in range(rowptr[I],rowptr[I+1]):
13973  * elementJacobian[eN,i,j] += weight*a_up[ii]*q_grad_v[eN,ebN,j,colind[ii]]*q_grad_w[eN,ebN,i,I] # <<<<<<<<<<<<<<
13974  * #j picard
13975  * #i
13976  */
13977  __pyx_t_45 = __pyx_v_ii;
13978  __pyx_t_46 = -1;
13979  if (__pyx_t_45 < 0) {
13980  __pyx_t_45 += __pyx_pybuffernd_a_up.diminfo[0].shape;
13981  if (unlikely(__pyx_t_45 < 0)) __pyx_t_46 = 0;
13982  } else if (unlikely(__pyx_t_45 >= __pyx_pybuffernd_a_up.diminfo[0].shape)) __pyx_t_46 = 0;
13983  if (unlikely(__pyx_t_46 != -1)) {
13984  __Pyx_RaiseBufferIndexError(__pyx_t_46);
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13988  __pyx_t_46 = -1;
13989  if (__pyx_t_47 < 0) {
13990  __pyx_t_47 += __pyx_pybuffernd_colind.diminfo[0].shape;
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13992  } else if (unlikely(__pyx_t_47 >= __pyx_pybuffernd_colind.diminfo[0].shape)) __pyx_t_46 = 0;
13993  if (unlikely(__pyx_t_46 != -1)) {
13994  __Pyx_RaiseBufferIndexError(__pyx_t_46);
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13997  __pyx_t_48 = __pyx_v_eN;
13998  __pyx_t_49 = __pyx_v_ebN;
13999  __pyx_t_50 = __pyx_v_j;
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14003  __pyx_t_48 += __pyx_pybuffernd_q_grad_v.diminfo[0].shape;
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14015  __pyx_t_51 += __pyx_pybuffernd_q_grad_v.diminfo[3].shape;
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14019  __Pyx_RaiseBufferIndexError(__pyx_t_46);
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14022  __pyx_t_52 = __pyx_v_eN;
14023  __pyx_t_53 = __pyx_v_ebN;
14024  __pyx_t_54 = __pyx_v_i;
14025  __pyx_t_55 = __pyx_v_I;
14026  __pyx_t_46 = -1;
14027  if (__pyx_t_52 < 0) {
14028  __pyx_t_52 += __pyx_pybuffernd_q_grad_w.diminfo[0].shape;
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14030  } else if (unlikely(__pyx_t_52 >= __pyx_pybuffernd_q_grad_w.diminfo[0].shape)) __pyx_t_46 = 0;
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14034  } else if (unlikely(__pyx_t_53 >= __pyx_pybuffernd_q_grad_w.diminfo[1].shape)) __pyx_t_46 = 1;
14035  if (__pyx_t_54 < 0) {
14036  __pyx_t_54 += __pyx_pybuffernd_q_grad_w.diminfo[2].shape;
14037  if (unlikely(__pyx_t_54 < 0)) __pyx_t_46 = 2;
14038  } else if (unlikely(__pyx_t_54 >= __pyx_pybuffernd_q_grad_w.diminfo[2].shape)) __pyx_t_46 = 2;
14039  if (__pyx_t_55 < 0) {
14040  __pyx_t_55 += __pyx_pybuffernd_q_grad_w.diminfo[3].shape;
14041  if (unlikely(__pyx_t_55 < 0)) __pyx_t_46 = 3;
14042  } else if (unlikely(__pyx_t_55 >= __pyx_pybuffernd_q_grad_w.diminfo[3].shape)) __pyx_t_46 = 3;
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14468  * for i in range(weak_residual.shape[1]):
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14582  * #cek hack, seems like cython needed some help figuring out that the rvalue was a float
14583  * weak_residual[eN,i] += float(mt_avg*w[eN,k,i]*dV[eN,k])
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14585  * numpy.ndarray[DTYPE_t,ndim=3] w,
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14588 
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14590 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_39updateMassJacobian_weakAvg(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
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14680  __pyx_L0:;
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14687  int __pyx_v_i;
14688  int __pyx_v_j;
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14699  __Pyx_Buffer __pyx_pybuffer_v;
14700  __Pyx_LocalBuf_ND __pyx_pybuffernd_w;
14701  __Pyx_Buffer __pyx_pybuffer_w;
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14708  Py_ssize_t __pyx_t_5;
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14710  int __pyx_t_7;
14711  npy_intp __pyx_t_8;
14712  npy_intp __pyx_t_9;
14713  int __pyx_t_10;
14714  Py_ssize_t __pyx_t_11;
14715  Py_ssize_t __pyx_t_12;
14716  int __pyx_t_13;
14717  Py_ssize_t __pyx_t_14;
14718  Py_ssize_t __pyx_t_15;
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14778  * cdef int eN,i,j,k
14779  * cdef double dmtj_avg,vol
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14782  * for k in range(dmt.shape[1]):
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14787 
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14794  */
14795  __pyx_v_vol = 0.0;
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14798  * for eN in range(dmt.shape[0]):
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14802  * for i in range(w.shape[2]):
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14807 
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14810  * for k in range(dmt.shape[1]):
14811  * vol += dV[eN,k] # <<<<<<<<<<<<<<
14812  * for i in range(w.shape[2]):
14813  * for j in range(v.shape[2]):
14814  */
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14817  __pyx_t_7 = -1;
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14822  if (__pyx_t_6 < 0) {
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14831  }
14832 
14833  /* "subsurfaceTransportFunctions.pyx":706
14834  * for k in range(dmt.shape[1]):
14835  * vol += dV[eN,k]
14836  * for i in range(w.shape[2]): # <<<<<<<<<<<<<<
14837  * for j in range(v.shape[2]):
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14843 
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14845  * vol += dV[eN,k]
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14847  * for j in range(v.shape[2]): # <<<<<<<<<<<<<<
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14849  * for k in range(dmt.shape[1]):
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14865  * for j in range(v.shape[2]):
14866  * dmtj_avg = 0.0
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14877  * for k in range(dmt.shape[1]):
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14879  * dmtj_avg /= vol
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14899  __pyx_t_13 = -1;
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15210  {
15211  __Pyx_BufFmt_StackElem __pyx_stack[1];
15212  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_dS.rcbuffer->pybuffer, (PyObject*)__pyx_v_dS, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 3, 0, __pyx_stack) == -1)) __PYX_ERR(0, 717, __pyx_L1_error)
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15214  __pyx_pybuffernd_dS.diminfo[0].strides = __pyx_pybuffernd_dS.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dS.diminfo[0].shape = __pyx_pybuffernd_dS.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_dS.diminfo[1].strides = __pyx_pybuffernd_dS.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_dS.diminfo[1].shape = __pyx_pybuffernd_dS.rcbuffer->pybuffer.shape[1]; __pyx_pybuffernd_dS.diminfo[2].strides = __pyx_pybuffernd_dS.rcbuffer->pybuffer.strides[2]; __pyx_pybuffernd_dS.diminfo[2].shape = __pyx_pybuffernd_dS.rcbuffer->pybuffer.shape[2];
15215  {
15216  __Pyx_BufFmt_StackElem __pyx_stack[1];
15217  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_flux.rcbuffer->pybuffer, (PyObject*)__pyx_v_flux, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 717, __pyx_L1_error)
15218  }
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15220 
15221  /* "subsurfaceTransportFunctions.pyx":724
15222  * cdef int eN,ebN,kb
15223  * cdef double integral
15224  * for eN in range(n.shape[0]): # <<<<<<<<<<<<<<
15225  * for ebN in range(n.shape[1]):
15226  * integral = 0.0
15227  */
15228  __pyx_t_1 = (__pyx_v_n->dimensions[0]);
15229  for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
15230  __pyx_v_eN = __pyx_t_2;
15231 
15232  /* "subsurfaceTransportFunctions.pyx":725
15233  * cdef double integral
15234  * for eN in range(n.shape[0]):
15235  * for ebN in range(n.shape[1]): # <<<<<<<<<<<<<<
15236  * integral = 0.0
15237  * for kb in range(n.shape[2]):
15238  */
15239  __pyx_t_3 = (__pyx_v_n->dimensions[1]);
15240  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
15241  __pyx_v_ebN = __pyx_t_4;
15242 
15243  /* "subsurfaceTransportFunctions.pyx":726
15244  * for eN in range(n.shape[0]):
15245  * for ebN in range(n.shape[1]):
15246  * integral = 0.0 # <<<<<<<<<<<<<<
15247  * for kb in range(n.shape[2]):
15248  * for I in range(n.shape[3]):
15249  */
15250  __pyx_v_integral = 0.0;
15251 
15252  /* "subsurfaceTransportFunctions.pyx":727
15253  * for ebN in range(n.shape[1]):
15254  * integral = 0.0
15255  * for kb in range(n.shape[2]): # <<<<<<<<<<<<<<
15256  * for I in range(n.shape[3]):
15257  * integral += v[eN,ebN,kb,I]*n[eN,ebN,kb,I]*dS[eN,ebN,kb]
15258  */
15259  __pyx_t_5 = (__pyx_v_n->dimensions[2]);
15260  for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
15261  __pyx_v_kb = __pyx_t_6;
15262 
15263  /* "subsurfaceTransportFunctions.pyx":728
15264  * integral = 0.0
15265  * for kb in range(n.shape[2]):
15266  * for I in range(n.shape[3]): # <<<<<<<<<<<<<<
15267  * integral += v[eN,ebN,kb,I]*n[eN,ebN,kb,I]*dS[eN,ebN,kb]
15268  * flux[eN,ebN] = integral
15269  */
15270  __pyx_t_7 = (__pyx_v_n->dimensions[3]);
15271  for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) {
15272  __pyx_v_I = __pyx_t_8;
15273 
15274  /* "subsurfaceTransportFunctions.pyx":729
15275  * for kb in range(n.shape[2]):
15276  * for I in range(n.shape[3]):
15277  * integral += v[eN,ebN,kb,I]*n[eN,ebN,kb,I]*dS[eN,ebN,kb] # <<<<<<<<<<<<<<
15278  * flux[eN,ebN] = integral
15279  *
15280  */
15281  __pyx_t_9 = __pyx_v_eN;
15282  __pyx_t_10 = __pyx_v_ebN;
15283  __pyx_t_11 = __pyx_v_kb;
15284  __pyx_t_12 = __pyx_v_I;
15285  __pyx_t_13 = -1;
15286  if (__pyx_t_9 < 0) {
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15288  if (unlikely(__pyx_t_9 < 0)) __pyx_t_13 = 0;
15289  } else if (unlikely(__pyx_t_9 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_13 = 0;
15290  if (__pyx_t_10 < 0) {
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15292  if (unlikely(__pyx_t_10 < 0)) __pyx_t_13 = 1;
15293  } else if (unlikely(__pyx_t_10 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_13 = 1;
15294  if (__pyx_t_11 < 0) {
15295  __pyx_t_11 += __pyx_pybuffernd_v.diminfo[2].shape;
15296  if (unlikely(__pyx_t_11 < 0)) __pyx_t_13 = 2;
15297  } else if (unlikely(__pyx_t_11 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_13 = 2;
15298  if (__pyx_t_12 < 0) {
15299  __pyx_t_12 += __pyx_pybuffernd_v.diminfo[3].shape;
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15301  } else if (unlikely(__pyx_t_12 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_13 = 3;
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15306  __pyx_t_14 = __pyx_v_eN;
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15308  __pyx_t_16 = __pyx_v_kb;
15309  __pyx_t_17 = __pyx_v_I;
15310  __pyx_t_13 = -1;
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15312  __pyx_t_14 += __pyx_pybuffernd_n.diminfo[0].shape;
15313  if (unlikely(__pyx_t_14 < 0)) __pyx_t_13 = 0;
15314  } else if (unlikely(__pyx_t_14 >= __pyx_pybuffernd_n.diminfo[0].shape)) __pyx_t_13 = 0;
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15316  __pyx_t_15 += __pyx_pybuffernd_n.diminfo[1].shape;
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15318  } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_n.diminfo[1].shape)) __pyx_t_13 = 1;
15319  if (__pyx_t_16 < 0) {
15320  __pyx_t_16 += __pyx_pybuffernd_n.diminfo[2].shape;
15321  if (unlikely(__pyx_t_16 < 0)) __pyx_t_13 = 2;
15322  } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_n.diminfo[2].shape)) __pyx_t_13 = 2;
15323  if (__pyx_t_17 < 0) {
15324  __pyx_t_17 += __pyx_pybuffernd_n.diminfo[3].shape;
15325  if (unlikely(__pyx_t_17 < 0)) __pyx_t_13 = 3;
15326  } else if (unlikely(__pyx_t_17 >= __pyx_pybuffernd_n.diminfo[3].shape)) __pyx_t_13 = 3;
15327  if (unlikely(__pyx_t_13 != -1)) {
15328  __Pyx_RaiseBufferIndexError(__pyx_t_13);
15329  __PYX_ERR(0, 729, __pyx_L1_error)
15330  }
15331  __pyx_t_18 = __pyx_v_eN;
15332  __pyx_t_19 = __pyx_v_ebN;
15333  __pyx_t_20 = __pyx_v_kb;
15334  __pyx_t_13 = -1;
15335  if (__pyx_t_18 < 0) {
15336  __pyx_t_18 += __pyx_pybuffernd_dS.diminfo[0].shape;
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15338  } else if (unlikely(__pyx_t_18 >= __pyx_pybuffernd_dS.diminfo[0].shape)) __pyx_t_13 = 0;
15339  if (__pyx_t_19 < 0) {
15340  __pyx_t_19 += __pyx_pybuffernd_dS.diminfo[1].shape;
15341  if (unlikely(__pyx_t_19 < 0)) __pyx_t_13 = 1;
15342  } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_dS.diminfo[1].shape)) __pyx_t_13 = 1;
15343  if (__pyx_t_20 < 0) {
15344  __pyx_t_20 += __pyx_pybuffernd_dS.diminfo[2].shape;
15345  if (unlikely(__pyx_t_20 < 0)) __pyx_t_13 = 2;
15346  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_dS.diminfo[2].shape)) __pyx_t_13 = 2;
15347  if (unlikely(__pyx_t_13 != -1)) {
15348  __Pyx_RaiseBufferIndexError(__pyx_t_13);
15349  __PYX_ERR(0, 729, __pyx_L1_error)
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15351  __pyx_v_integral = (__pyx_v_integral + (((*__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_9, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_10, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_11, __pyx_pybuffernd_v.diminfo[2].strides, __pyx_t_12, __pyx_pybuffernd_v.diminfo[3].strides)) * (*__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_n.rcbuffer->pybuffer.buf, __pyx_t_14, __pyx_pybuffernd_n.diminfo[0].strides, __pyx_t_15, __pyx_pybuffernd_n.diminfo[1].strides, __pyx_t_16, __pyx_pybuffernd_n.diminfo[2].strides, __pyx_t_17, __pyx_pybuffernd_n.diminfo[3].strides))) * (*__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_dS.rcbuffer->pybuffer.buf, __pyx_t_18, __pyx_pybuffernd_dS.diminfo[0].strides, __pyx_t_19, __pyx_pybuffernd_dS.diminfo[1].strides, __pyx_t_20, __pyx_pybuffernd_dS.diminfo[2].strides))));
15352  }
15353  }
15354 
15355  /* "subsurfaceTransportFunctions.pyx":730
15356  * for I in range(n.shape[3]):
15357  * integral += v[eN,ebN,kb,I]*n[eN,ebN,kb,I]*dS[eN,ebN,kb]
15358  * flux[eN,ebN] = integral # <<<<<<<<<<<<<<
15359  *
15360  * def computeSimpleCharacteristicVelocityFromElementVelocity(numpy.ndarray[DTYPE_t,ndim=3] df,
15361  */
15362  __pyx_t_21 = __pyx_v_eN;
15363  __pyx_t_22 = __pyx_v_ebN;
15364  __pyx_t_6 = -1;
15365  if (__pyx_t_21 < 0) {
15366  __pyx_t_21 += __pyx_pybuffernd_flux.diminfo[0].shape;
15367  if (unlikely(__pyx_t_21 < 0)) __pyx_t_6 = 0;
15368  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_flux.diminfo[0].shape)) __pyx_t_6 = 0;
15369  if (__pyx_t_22 < 0) {
15370  __pyx_t_22 += __pyx_pybuffernd_flux.diminfo[1].shape;
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15372  } else if (unlikely(__pyx_t_22 >= __pyx_pybuffernd_flux.diminfo[1].shape)) __pyx_t_6 = 1;
15373  if (unlikely(__pyx_t_6 != -1)) {
15374  __Pyx_RaiseBufferIndexError(__pyx_t_6);
15375  __PYX_ERR(0, 730, __pyx_L1_error)
15376  }
15377  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_flux.rcbuffer->pybuffer.buf, __pyx_t_21, __pyx_pybuffernd_flux.diminfo[0].strides, __pyx_t_22, __pyx_pybuffernd_flux.diminfo[1].strides) = __pyx_v_integral;
15378  }
15379  }
15380 
15381  /* "subsurfaceTransportFunctions.pyx":717
15382  * #ELLAM
15383  * ########################################################################
15384  * def calculateNormalFlux(numpy.ndarray[DTYPE_t,ndim=4] v, # <<<<<<<<<<<<<<
15385  * numpy.ndarray[DTYPE_t,ndim=4] n,
15386  * numpy.ndarray[DTYPE_t,ndim=3] dS,
15387  */
15388 
15389  /* function exit code */
15390  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
15391  goto __pyx_L0;
15392  __pyx_L1_error:;
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15394  __Pyx_PyThreadState_declare
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15396  __Pyx_ErrFetch(&__pyx_type, &__pyx_value, &__pyx_tb);
15397  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dS.rcbuffer->pybuffer);
15398  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_flux.rcbuffer->pybuffer);
15399  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_n.rcbuffer->pybuffer);
15400  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_v.rcbuffer->pybuffer);
15401  __Pyx_ErrRestore(__pyx_type, __pyx_value, __pyx_tb);}
15402  __Pyx_AddTraceback("subsurfaceTransportFunctions.calculateNormalFlux", __pyx_clineno, __pyx_lineno, __pyx_filename);
15403  __pyx_r = NULL;
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15405  __pyx_L0:;
15406  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dS.rcbuffer->pybuffer);
15407  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_flux.rcbuffer->pybuffer);
15408  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_n.rcbuffer->pybuffer);
15409  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_v.rcbuffer->pybuffer);
15410  __pyx_L2:;
15411  __Pyx_XGIVEREF(__pyx_r);
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15415 
15416 /* "subsurfaceTransportFunctions.pyx":732
15417  * flux[eN,ebN] = integral
15418  *
15419  * def computeSimpleCharacteristicVelocityFromElementVelocity(numpy.ndarray[DTYPE_t,ndim=3] df, # <<<<<<<<<<<<<<
15420  * numpy.ndarray[DTYPE_t,ndim=3] characteristic_velocity,
15421  * numpy.ndarray[DTYPE_t,ndim=2] dm,
15422  */
15423 
15424 /* Python wrapper */
15425 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_43computeSimpleCharacteristicVelocityFromElementVelocity(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
15426 static char __pyx_doc_28subsurfaceTransportFunctions_42computeSimpleCharacteristicVelocityFromElementVelocity[] = "\n simple approximation for \\lambda = df/\010ar{dm} using \010ar{dm} = \014rac{1}{\\Omega_e} \\int_{\\Omega_e} dm dV\n ";
15427 static PyMethodDef __pyx_mdef_28subsurfaceTransportFunctions_43computeSimpleCharacteristicVelocityFromElementVelocity = {"computeSimpleCharacteristicVelocityFromElementVelocity", (PyCFunction)__pyx_pw_28subsurfaceTransportFunctions_43computeSimpleCharacteristicVelocityFromElementVelocity, METH_VARARGS|METH_KEYWORDS, __pyx_doc_28subsurfaceTransportFunctions_42computeSimpleCharacteristicVelocityFromElementVelocity};
15428 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_43computeSimpleCharacteristicVelocityFromElementVelocity(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
15429  PyArrayObject *__pyx_v_df = 0;
15430  PyArrayObject *__pyx_v_characteristic_velocity = 0;
15431  PyArrayObject *__pyx_v_dm = 0;
15432  PyArrayObject *__pyx_v_dV = 0;
15433  PyObject *__pyx_r = 0;
15434  __Pyx_RefNannyDeclarations
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15436  {
15437  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_df,&__pyx_n_s_characteristic_velocity,&__pyx_n_s_dm,&__pyx_n_s_dV,0};
15438  PyObject* values[4] = {0,0,0,0};
15439  if (unlikely(__pyx_kwds)) {
15440  Py_ssize_t kw_args;
15441  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
15442  switch (pos_args) {
15443  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
15444  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
15445  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
15446  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
15447  case 0: break;
15448  default: goto __pyx_L5_argtuple_error;
15449  }
15450  kw_args = PyDict_Size(__pyx_kwds);
15451  switch (pos_args) {
15452  case 0:
15453  if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_df)) != 0)) kw_args--;
15454  else goto __pyx_L5_argtuple_error;
15455  case 1:
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15457  else {
15458  __Pyx_RaiseArgtupleInvalid("computeSimpleCharacteristicVelocityFromElementVelocity", 1, 4, 4, 1); __PYX_ERR(0, 732, __pyx_L3_error)
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15460  case 2:
15461  if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dm)) != 0)) kw_args--;
15462  else {
15463  __Pyx_RaiseArgtupleInvalid("computeSimpleCharacteristicVelocityFromElementVelocity", 1, 4, 4, 2); __PYX_ERR(0, 732, __pyx_L3_error)
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15465  case 3:
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15467  else {
15468  __Pyx_RaiseArgtupleInvalid("computeSimpleCharacteristicVelocityFromElementVelocity", 1, 4, 4, 3); __PYX_ERR(0, 732, __pyx_L3_error)
15469  }
15470  }
15471  if (unlikely(kw_args > 0)) {
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15475  goto __pyx_L5_argtuple_error;
15476  } else {
15477  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
15478  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
15479  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
15480  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
15481  }
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15484  __pyx_v_dm = ((PyArrayObject *)values[2]);
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15487  goto __pyx_L4_argument_unpacking_done;
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15500 
15501  /* function exit code */
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15509 
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15512  int __pyx_v_k;
15513  int __pyx_v_I;
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15515  double __pyx_v_vol_e;
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15519  __Pyx_Buffer __pyx_pybuffer_dV;
15520  __Pyx_LocalBuf_ND __pyx_pybuffernd_df;
15521  __Pyx_Buffer __pyx_pybuffer_df;
15522  __Pyx_LocalBuf_ND __pyx_pybuffernd_dm;
15523  __Pyx_Buffer __pyx_pybuffer_dm;
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15525  __Pyx_RefNannyDeclarations
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15527  int __pyx_t_2;
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15530  Py_ssize_t __pyx_t_5;
15531  Py_ssize_t __pyx_t_6;
15532  int __pyx_t_7;
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15538  Py_ssize_t __pyx_t_13;
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15540  Py_ssize_t __pyx_t_15;
15541  int __pyx_t_16;
15542  __pyx_t_28subsurfaceTransportFunctions_DTYPE_t __pyx_t_17;
15543  double __pyx_t_18;
15544  Py_ssize_t __pyx_t_19;
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15553  __pyx_pybuffer_characteristic_velocity.refcount = 0;
15554  __pyx_pybuffernd_characteristic_velocity.data = NULL;
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15556  __pyx_pybuffer_dm.pybuffer.buf = NULL;
15557  __pyx_pybuffer_dm.refcount = 0;
15558  __pyx_pybuffernd_dm.data = NULL;
15559  __pyx_pybuffernd_dm.rcbuffer = &__pyx_pybuffer_dm;
15560  __pyx_pybuffer_dV.pybuffer.buf = NULL;
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15562  __pyx_pybuffernd_dV.data = NULL;
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15580  __Pyx_BufFmt_StackElem __pyx_stack[1];
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15584 
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15586  * cdef double omega_e, vol_e
15587  *
15588  * for eN in range(dm.shape[0]): # <<<<<<<<<<<<<<
15589  * omega_e = 0.0
15590  * vol_e = 0.0
15591  */
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15595 
15596  /* "subsurfaceTransportFunctions.pyx":744
15597  *
15598  * for eN in range(dm.shape[0]):
15599  * omega_e = 0.0 # <<<<<<<<<<<<<<
15600  * vol_e = 0.0
15601  * for k in range(dm.shape[1]):
15602  */
15603  __pyx_v_omega_e = 0.0;
15604 
15605  /* "subsurfaceTransportFunctions.pyx":745
15606  * for eN in range(dm.shape[0]):
15607  * omega_e = 0.0
15608  * vol_e = 0.0 # <<<<<<<<<<<<<<
15609  * for k in range(dm.shape[1]):
15610  * vol_e += dV[eN,k]
15611  */
15612  __pyx_v_vol_e = 0.0;
15613 
15614  /* "subsurfaceTransportFunctions.pyx":746
15615  * omega_e = 0.0
15616  * vol_e = 0.0
15617  * for k in range(dm.shape[1]): # <<<<<<<<<<<<<<
15618  * vol_e += dV[eN,k]
15619  * omega_e += dV[eN,k]*dm[eN,k]
15620  */
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15622  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
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15624 
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15626  * vol_e = 0.0
15627  * for k in range(dm.shape[1]):
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15629  * omega_e += dV[eN,k]*dm[eN,k]
15630  * for k in range(df.shape[1]):
15631  */
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15633  __pyx_t_6 = __pyx_v_k;
15634  __pyx_t_7 = -1;
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15654  * for I in range(df.shape[2]):
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15658  __pyx_t_7 = -1;
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15666  } else if (unlikely(__pyx_t_9 >= __pyx_pybuffernd_dV.diminfo[1].shape)) __pyx_t_7 = 1;
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15678  if (__pyx_t_11 < 0) {
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15687  }
15688 
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15691  * omega_e += dV[eN,k]*dm[eN,k]
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15693  * for I in range(df.shape[2]):
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15695  */
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15699 
15700  /* "subsurfaceTransportFunctions.pyx":750
15701  * omega_e += dV[eN,k]*dm[eN,k]
15702  * for k in range(df.shape[1]):
15703  * for I in range(df.shape[2]): # <<<<<<<<<<<<<<
15704  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12)
15705  *
15706  */
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15709  __pyx_v_I = __pyx_t_7;
15710 
15711  /* "subsurfaceTransportFunctions.pyx":751
15712  * for k in range(df.shape[1]):
15713  * for I in range(df.shape[2]):
15714  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12) # <<<<<<<<<<<<<<
15715  *
15716  * def computeSimpleCharacteristicVelocityFromVelocityDOFs(numpy.ndarray[DTYPE_t,ndim=1] df_dofs,
15717  */
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15725  } else if (unlikely(__pyx_t_13 >= __pyx_pybuffernd_df.diminfo[0].shape)) __pyx_t_16 = 0;
15726  if (__pyx_t_14 < 0) {
15727  __pyx_t_14 += __pyx_pybuffernd_df.diminfo[1].shape;
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15729  } else if (unlikely(__pyx_t_14 >= __pyx_pybuffernd_df.diminfo[1].shape)) __pyx_t_16 = 1;
15730  if (__pyx_t_15 < 0) {
15731  __pyx_t_15 += __pyx_pybuffernd_df.diminfo[2].shape;
15732  if (unlikely(__pyx_t_15 < 0)) __pyx_t_16 = 2;
15733  } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_df.diminfo[2].shape)) __pyx_t_16 = 2;
15734  if (unlikely(__pyx_t_16 != -1)) {
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15741  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
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15744  __pyx_t_19 = __pyx_v_eN;
15745  __pyx_t_20 = __pyx_v_k;
15746  __pyx_t_21 = __pyx_v_I;
15747  __pyx_t_16 = -1;
15748  if (__pyx_t_19 < 0) {
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15752  if (__pyx_t_20 < 0) {
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15755  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_characteristic_velocity.diminfo[1].shape)) __pyx_t_16 = 1;
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15759  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_characteristic_velocity.diminfo[2].shape)) __pyx_t_16 = 2;
15760  if (unlikely(__pyx_t_16 != -1)) {
15761  __Pyx_RaiseBufferIndexError(__pyx_t_16);
15762  __PYX_ERR(0, 751, __pyx_L1_error)
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15765  }
15766  }
15767  }
15768 
15769  /* "subsurfaceTransportFunctions.pyx":732
15770  * flux[eN,ebN] = integral
15771  *
15772  * def computeSimpleCharacteristicVelocityFromElementVelocity(numpy.ndarray[DTYPE_t,ndim=3] df, # <<<<<<<<<<<<<<
15773  * numpy.ndarray[DTYPE_t,ndim=3] characteristic_velocity,
15774  * numpy.ndarray[DTYPE_t,ndim=2] dm,
15775  */
15776 
15777  /* function exit code */
15778  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
15779  goto __pyx_L0;
15780  __pyx_L1_error:;
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15782  __Pyx_PyThreadState_declare
15783  __Pyx_PyThreadState_assign
15784  __Pyx_ErrFetch(&__pyx_type, &__pyx_value, &__pyx_tb);
15785  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_characteristic_velocity.rcbuffer->pybuffer);
15786  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dV.rcbuffer->pybuffer);
15787  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_df.rcbuffer->pybuffer);
15788  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dm.rcbuffer->pybuffer);
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15804 /* "subsurfaceTransportFunctions.pyx":753
15805  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12)
15806  *
15807  * def computeSimpleCharacteristicVelocityFromVelocityDOFs(numpy.ndarray[DTYPE_t,ndim=1] df_dofs, # <<<<<<<<<<<<<<
15808  * numpy.ndarray[DTYPE_t,ndim=1] characteristic_velocity_dofs,
15809  * numpy.ndarray[ITYPE_t,ndim=2] l2g,
15810  */
15811 
15812 /* Python wrapper */
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16093  }
16094 
16095  /* "subsurfaceTransportFunctions.pyx":771
16096  * vol_e += dV[eN,k]
16097  * omega_e += dV[eN,k]*dm[eN,k]
16098  * for j in range(l2g.shape[1]): # <<<<<<<<<<<<<<
16099  * J = l2g[eN,j]
16100  * characteristic_velocity_dofs[J] = df_dofs[J]*vol_e/(omega_e+1.0e-12)
16101  */
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16105 
16106  /* "subsurfaceTransportFunctions.pyx":772
16107  * omega_e += dV[eN,k]*dm[eN,k]
16108  * for j in range(l2g.shape[1]):
16109  * J = l2g[eN,j] # <<<<<<<<<<<<<<
16110  * characteristic_velocity_dofs[J] = df_dofs[J]*vol_e/(omega_e+1.0e-12)
16111  *
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16129 
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16131  * for j in range(l2g.shape[1]):
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16208  * double t,
16209  * double tForReversal,
16210  */
16211 
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16218  double __pyx_v_tForReversal;
16219  double __pyx_v_clock;
16220  double __pyx_v_xc;
16221  double __pyx_v_yc;
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16447  * if transient == 1:
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16455  * if transient == 1:
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16460 
16461  /* "subsurfaceTransportFunctions.pyx":788
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16463  * if v.shape[2] == 3:
16464  * if transient == 1: # <<<<<<<<<<<<<<
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16486  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
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16495  * for k in range(x.shape[1]):
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16546  * v[eN,k,2]=zvelocity
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16590 
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16592  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
16593  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
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16619 
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16621  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
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16664  * if v.shape[2] == 3:
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16666  * for eN in range(x.shape[0]):
16667  * for k in range(x.shape[1]):
16668  */
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16671 
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16676  * for k in range(x.shape[1]):
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16688  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
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16699  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
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16724  __pyx_t_33 = 0;
16725  __pyx_t_9 = -1;
16726  if (__pyx_t_31 < 0) {
16727  __pyx_t_31 += __pyx_pybuffernd_v.diminfo[0].shape;
16728  if (unlikely(__pyx_t_31 < 0)) __pyx_t_9 = 0;
16729  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_9 = 0;
16730  if (__pyx_t_32 < 0) {
16731  __pyx_t_32 += __pyx_pybuffernd_v.diminfo[1].shape;
16732  if (unlikely(__pyx_t_32 < 0)) __pyx_t_9 = 1;
16733  } else if (unlikely(__pyx_t_32 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_9 = 1;
16734  if (__pyx_t_33 < 0) {
16735  __pyx_t_33 += __pyx_pybuffernd_v.diminfo[2].shape;
16736  if (unlikely(__pyx_t_33 < 0)) __pyx_t_9 = 2;
16737  } else if (unlikely(__pyx_t_33 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_9 = 2;
16738  if (unlikely(__pyx_t_9 != -1)) {
16739  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16740  __PYX_ERR(0, 798, __pyx_L1_error)
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16743 
16744  /* "subsurfaceTransportFunctions.pyx":799
16745  * for k in range(x.shape[1]):
16746  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
16747  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0]) # <<<<<<<<<<<<<<
16748  * v[eN,k,2]=zvelocity
16749  * else:
16750  */
16751  __pyx_t_34 = __pyx_v_eN;
16752  __pyx_t_35 = __pyx_v_k;
16753  __pyx_t_36 = 0;
16754  __pyx_t_9 = -1;
16755  if (__pyx_t_34 < 0) {
16756  __pyx_t_34 += __pyx_pybuffernd_x.diminfo[0].shape;
16757  if (unlikely(__pyx_t_34 < 0)) __pyx_t_9 = 0;
16758  } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_9 = 0;
16759  if (__pyx_t_35 < 0) {
16760  __pyx_t_35 += __pyx_pybuffernd_x.diminfo[1].shape;
16761  if (unlikely(__pyx_t_35 < 0)) __pyx_t_9 = 1;
16762  } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_9 = 1;
16763  if (__pyx_t_36 < 0) {
16764  __pyx_t_36 += __pyx_pybuffernd_x.diminfo[2].shape;
16765  if (unlikely(__pyx_t_36 < 0)) __pyx_t_9 = 2;
16766  } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_9 = 2;
16767  if (unlikely(__pyx_t_9 != -1)) {
16768  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16769  __PYX_ERR(0, 799, __pyx_L1_error)
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16771  __pyx_t_37 = __pyx_v_eN;
16772  __pyx_t_38 = __pyx_v_k;
16773  __pyx_t_39 = 1;
16774  __pyx_t_9 = -1;
16775  if (__pyx_t_37 < 0) {
16776  __pyx_t_37 += __pyx_pybuffernd_v.diminfo[0].shape;
16777  if (unlikely(__pyx_t_37 < 0)) __pyx_t_9 = 0;
16778  } else if (unlikely(__pyx_t_37 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_9 = 0;
16779  if (__pyx_t_38 < 0) {
16780  __pyx_t_38 += __pyx_pybuffernd_v.diminfo[1].shape;
16781  if (unlikely(__pyx_t_38 < 0)) __pyx_t_9 = 1;
16782  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_9 = 1;
16783  if (__pyx_t_39 < 0) {
16784  __pyx_t_39 += __pyx_pybuffernd_v.diminfo[2].shape;
16785  if (unlikely(__pyx_t_39 < 0)) __pyx_t_9 = 2;
16786  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_9 = 2;
16787  if (unlikely(__pyx_t_9 != -1)) {
16788  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16789  __PYX_ERR(0, 799, __pyx_L1_error)
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16792 
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16794  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
16795  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
16796  * v[eN,k,2]=zvelocity # <<<<<<<<<<<<<<
16797  * else:
16798  * assert v.shape[2] == 2
16799  */
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16801  __pyx_t_41 = __pyx_v_k;
16802  __pyx_t_42 = 2;
16803  __pyx_t_9 = -1;
16804  if (__pyx_t_40 < 0) {
16805  __pyx_t_40 += __pyx_pybuffernd_v.diminfo[0].shape;
16806  if (unlikely(__pyx_t_40 < 0)) __pyx_t_9 = 0;
16807  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_9 = 0;
16808  if (__pyx_t_41 < 0) {
16809  __pyx_t_41 += __pyx_pybuffernd_v.diminfo[1].shape;
16810  if (unlikely(__pyx_t_41 < 0)) __pyx_t_9 = 1;
16811  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_9 = 1;
16812  if (__pyx_t_42 < 0) {
16813  __pyx_t_42 += __pyx_pybuffernd_v.diminfo[2].shape;
16814  if (unlikely(__pyx_t_42 < 0)) __pyx_t_9 = 2;
16815  } else if (unlikely(__pyx_t_42 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_9 = 2;
16816  if (unlikely(__pyx_t_9 != -1)) {
16817  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16818  __PYX_ERR(0, 800, __pyx_L1_error)
16819  }
16820  *__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_40, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_41, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_42, __pyx_pybuffernd_v.diminfo[2].strides) = __pyx_v_zvelocity;
16821  }
16822  }
16823  }
16824  __pyx_L4:;
16825 
16826  /* "subsurfaceTransportFunctions.pyx":787
16827  * cdef double pi
16828  * pi = M_PI
16829  * if v.shape[2] == 3: # <<<<<<<<<<<<<<
16830  * if transient == 1:
16831  * for eN in range(x.shape[0]):
16832  */
16833  goto __pyx_L3;
16834  }
16835 
16836  /* "subsurfaceTransportFunctions.pyx":802
16837  * v[eN,k,2]=zvelocity
16838  * else:
16839  * assert v.shape[2] == 2 # <<<<<<<<<<<<<<
16840  * if transient == 1:
16841  * for eN in range(x.shape[0]):
16842  */
16843  /*else*/ {
16844  #ifndef CYTHON_WITHOUT_ASSERTIONS
16845  if (unlikely(!Py_OptimizeFlag)) {
16846  if (unlikely(!(((__pyx_v_v->dimensions[2]) == 2) != 0))) {
16847  PyErr_SetNone(PyExc_AssertionError);
16848  __PYX_ERR(0, 802, __pyx_L1_error)
16849  }
16850  }
16851  #endif
16852 
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16854  * else:
16855  * assert v.shape[2] == 2
16856  * if transient == 1: # <<<<<<<<<<<<<<
16857  * for eN in range(x.shape[0]):
16858  * for k in range(x.shape[1]):
16859  */
16860  __pyx_t_1 = ((__pyx_v_transient == 1) != 0);
16861  if (__pyx_t_1) {
16862 
16863  /* "subsurfaceTransportFunctions.pyx":804
16864  * assert v.shape[2] == 2
16865  * if transient == 1:
16866  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
16867  * for k in range(x.shape[1]):
16868  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
16869  */
16870  __pyx_t_2 = (__pyx_v_x->dimensions[0]);
16871  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
16872  __pyx_v_eN = __pyx_t_3;
16873 
16874  /* "subsurfaceTransportFunctions.pyx":805
16875  * if transient == 1:
16876  * for eN in range(x.shape[0]):
16877  * for k in range(x.shape[1]): # <<<<<<<<<<<<<<
16878  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
16879  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
16880  */
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16882  for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
16883  __pyx_v_k = __pyx_t_5;
16884 
16885  /* "subsurfaceTransportFunctions.pyx":806
16886  * for eN in range(x.shape[0]):
16887  * for k in range(x.shape[1]):
16888  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc) # <<<<<<<<<<<<<<
16889  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
16890  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
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16892  __pyx_t_43 = __pyx_v_eN;
16893  __pyx_t_44 = __pyx_v_k;
16894  __pyx_t_45 = 1;
16895  __pyx_t_9 = -1;
16896  if (__pyx_t_43 < 0) {
16897  __pyx_t_43 += __pyx_pybuffernd_x.diminfo[0].shape;
16898  if (unlikely(__pyx_t_43 < 0)) __pyx_t_9 = 0;
16899  } else if (unlikely(__pyx_t_43 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_9 = 0;
16900  if (__pyx_t_44 < 0) {
16901  __pyx_t_44 += __pyx_pybuffernd_x.diminfo[1].shape;
16902  if (unlikely(__pyx_t_44 < 0)) __pyx_t_9 = 1;
16903  } else if (unlikely(__pyx_t_44 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_9 = 1;
16904  if (__pyx_t_45 < 0) {
16905  __pyx_t_45 += __pyx_pybuffernd_x.diminfo[2].shape;
16906  if (unlikely(__pyx_t_45 < 0)) __pyx_t_9 = 2;
16907  } else if (unlikely(__pyx_t_45 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_9 = 2;
16908  if (unlikely(__pyx_t_9 != -1)) {
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16913  __pyx_t_47 = __pyx_v_k;
16914  __pyx_t_48 = 0;
16915  __pyx_t_9 = -1;
16916  if (__pyx_t_46 < 0) {
16917  __pyx_t_46 += __pyx_pybuffernd_v.diminfo[0].shape;
16918  if (unlikely(__pyx_t_46 < 0)) __pyx_t_9 = 0;
16919  } else if (unlikely(__pyx_t_46 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_9 = 0;
16920  if (__pyx_t_47 < 0) {
16921  __pyx_t_47 += __pyx_pybuffernd_v.diminfo[1].shape;
16922  if (unlikely(__pyx_t_47 < 0)) __pyx_t_9 = 1;
16923  } else if (unlikely(__pyx_t_47 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_9 = 1;
16924  if (__pyx_t_48 < 0) {
16925  __pyx_t_48 += __pyx_pybuffernd_v.diminfo[2].shape;
16926  if (unlikely(__pyx_t_48 < 0)) __pyx_t_9 = 2;
16927  } else if (unlikely(__pyx_t_48 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_9 = 2;
16928  if (unlikely(__pyx_t_9 != -1)) {
16929  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16930  __PYX_ERR(0, 806, __pyx_L1_error)
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16933 
16934  /* "subsurfaceTransportFunctions.pyx":807
16935  * for k in range(x.shape[1]):
16936  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
16937  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0]) # <<<<<<<<<<<<<<
16938  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
16939  * else:
16940  */
16941  __pyx_t_49 = __pyx_v_eN;
16942  __pyx_t_50 = __pyx_v_k;
16943  __pyx_t_51 = 0;
16944  __pyx_t_9 = -1;
16945  if (__pyx_t_49 < 0) {
16946  __pyx_t_49 += __pyx_pybuffernd_x.diminfo[0].shape;
16947  if (unlikely(__pyx_t_49 < 0)) __pyx_t_9 = 0;
16948  } else if (unlikely(__pyx_t_49 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_9 = 0;
16949  if (__pyx_t_50 < 0) {
16950  __pyx_t_50 += __pyx_pybuffernd_x.diminfo[1].shape;
16951  if (unlikely(__pyx_t_50 < 0)) __pyx_t_9 = 1;
16952  } else if (unlikely(__pyx_t_50 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_9 = 1;
16953  if (__pyx_t_51 < 0) {
16954  __pyx_t_51 += __pyx_pybuffernd_x.diminfo[2].shape;
16955  if (unlikely(__pyx_t_51 < 0)) __pyx_t_9 = 2;
16956  } else if (unlikely(__pyx_t_51 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_9 = 2;
16957  if (unlikely(__pyx_t_9 != -1)) {
16958  __Pyx_RaiseBufferIndexError(__pyx_t_9);
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16961  __pyx_t_52 = __pyx_v_eN;
16962  __pyx_t_53 = __pyx_v_k;
16963  __pyx_t_54 = 1;
16964  __pyx_t_9 = -1;
16965  if (__pyx_t_52 < 0) {
16966  __pyx_t_52 += __pyx_pybuffernd_v.diminfo[0].shape;
16967  if (unlikely(__pyx_t_52 < 0)) __pyx_t_9 = 0;
16968  } else if (unlikely(__pyx_t_52 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_9 = 0;
16969  if (__pyx_t_53 < 0) {
16970  __pyx_t_53 += __pyx_pybuffernd_v.diminfo[1].shape;
16971  if (unlikely(__pyx_t_53 < 0)) __pyx_t_9 = 1;
16972  } else if (unlikely(__pyx_t_53 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_9 = 1;
16973  if (__pyx_t_54 < 0) {
16974  __pyx_t_54 += __pyx_pybuffernd_v.diminfo[2].shape;
16975  if (unlikely(__pyx_t_54 < 0)) __pyx_t_9 = 2;
16976  } else if (unlikely(__pyx_t_54 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_9 = 2;
16977  if (unlikely(__pyx_t_9 != -1)) {
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16982 
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16984  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
16985  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
16986  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock # <<<<<<<<<<<<<<
16987  * else:
16988  * for eN in range(x.shape[0]):
16989  */
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16996  __Pyx_GIVEREF(__pyx_t_24);
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16998  __Pyx_GIVEREF(__pyx_t_27);
16999  PyTuple_SET_ITEM(__pyx_t_22, 1, __pyx_t_27);
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17001  __Pyx_GIVEREF(__pyx_slice__4);
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17007  __pyx_t_26 = (__pyx_v_tForReversal - __pyx_v_t);
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17026  * else:
17027  * assert v.shape[2] == 2
17028  * if transient == 1: # <<<<<<<<<<<<<<
17029  * for eN in range(x.shape[0]):
17030  * for k in range(x.shape[1]):
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17032  goto __pyx_L13;
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17034 
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17036  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
17037  * else:
17038  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
17039  * for k in range(x.shape[1]):
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17048  * else:
17049  * for eN in range(x.shape[0]):
17050  * for k in range(x.shape[1]): # <<<<<<<<<<<<<<
17051  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
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17059  * for eN in range(x.shape[0]):
17060  * for k in range(x.shape[1]):
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17062  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
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17066  __pyx_t_56 = __pyx_v_k;
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17112  *
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17115  __pyx_t_62 = __pyx_v_k;
17116  __pyx_t_63 = 0;
17117  __pyx_t_9 = -1;
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17158  __pyx_L13:;
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17160  __pyx_L3:;
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17163  *
17164  * #problem specific velocity evaluation
17165  * def rotatingGaussianElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
17166  * double t,
17167  * double tForReversal,
17168  */
17169 
17170  /* function exit code */
17171  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
17172  goto __pyx_L0;
17173  __pyx_L1_error:;
17174  __Pyx_XDECREF(__pyx_t_22);
17175  __Pyx_XDECREF(__pyx_t_23);
17176  __Pyx_XDECREF(__pyx_t_24);
17177  __Pyx_XDECREF(__pyx_t_27);
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17179  __Pyx_PyThreadState_declare
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17182  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_v.rcbuffer->pybuffer);
17183  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_x.rcbuffer->pybuffer);
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17189  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_v.rcbuffer->pybuffer);
17190  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_x.rcbuffer->pybuffer);
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17198  *
17199  *
17200  * def rotatingGaussianElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
17201  * double t,
17202  * double tForReversal,
17203  */
17204 
17205 /* Python wrapper */
17206 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_49rotatingGaussianElementVelocityEval4(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
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17209  int __pyx_v_transient;
17210  double __pyx_v_t;
17211  double __pyx_v_tForReversal;
17212  double __pyx_v_clock;
17213  double __pyx_v_xc;
17214  double __pyx_v_yc;
17215  PyArrayObject *__pyx_v_x = 0;
17216  PyArrayObject *__pyx_v_v = 0;
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17225  Py_ssize_t kw_args;
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17227  switch (pos_args) {
17228  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
17229  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
17230  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
17231  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
17232  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
17233  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
17234  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
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17236  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
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17240  kw_args = PyDict_Size(__pyx_kwds);
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17253  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval4", 0, 8, 9, 2); __PYX_ERR(0, 816, __pyx_L3_error)
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17255  case 3:
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17258  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval4", 0, 8, 9, 3); __PYX_ERR(0, 816, __pyx_L3_error)
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17260  case 4:
17261  if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xc)) != 0)) kw_args--;
17262  else {
17263  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval4", 0, 8, 9, 4); __PYX_ERR(0, 816, __pyx_L3_error)
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17277  else {
17278  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval4", 0, 8, 9, 7); __PYX_ERR(0, 816, __pyx_L3_error)
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17293  values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
17294  values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
17295  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
17296  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
17297  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
17298  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
17299  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
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17318  goto __pyx_L4_argument_unpacking_done;
17319  __pyx_L5_argtuple_error:;
17320  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval4", 0, 8, 9, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 816, __pyx_L3_error)
17321  __pyx_L3_error:;
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17323  __Pyx_RefNannyFinishContext();
17324  return NULL;
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17327  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_v), __pyx_ptype_5numpy_ndarray, 1, "v", 0))) __PYX_ERR(0, 822, __pyx_L1_error)
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17329 
17330  /* function exit code */
17331  goto __pyx_L0;
17332  __pyx_L1_error:;
17333  __pyx_r = NULL;
17334  __pyx_L0:;
17335  __Pyx_RefNannyFinishContext();
17336  return __pyx_r;
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17338 
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17342  int __pyx_v_k;
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17457  * cdef int eN,ebN,k
17458  * cdef double pi
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17460  * if v.shape[-1] == 3:
17461  * if transient == 1:
17462  */
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17465  /* "subsurfaceTransportFunctions.pyx":827
17466  * cdef double pi
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17469  * if transient == 1:
17470  * for eN in range(x.shape[0]):
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17475  /* "subsurfaceTransportFunctions.pyx":828
17476  * pi = M_PI
17477  * if v.shape[-1] == 3:
17478  * if transient == 1: # <<<<<<<<<<<<<<
17479  * for eN in range(x.shape[0]):
17480  * for ebN in range(x.shape[1]):
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17485  /* "subsurfaceTransportFunctions.pyx":829
17486  * if v.shape[-1] == 3:
17487  * if transient == 1:
17488  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
17489  * for ebN in range(x.shape[1]):
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17495 
17496  /* "subsurfaceTransportFunctions.pyx":830
17497  * if transient == 1:
17498  * for eN in range(x.shape[0]):
17499  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
17500  * for k in range(x.shape[2]):
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17502  */
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17506 
17507  /* "subsurfaceTransportFunctions.pyx":831
17508  * for eN in range(x.shape[0]):
17509  * for ebN in range(x.shape[1]):
17510  * for k in range(x.shape[2]): # <<<<<<<<<<<<<<
17511  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
17512  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
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17519  * for ebN in range(x.shape[1]):
17520  * for k in range(x.shape[2]):
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17522  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
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17578  * for k in range(x.shape[2]):
17579  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
17580  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
17581  * v[eN,ebN,k,2]=zvelocity
17582  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
17583  */
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17635 
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17637  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
17638  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
17639  * v[eN,ebN,k,2]=zvelocity # <<<<<<<<<<<<<<
17640  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
17641  * else:
17642  */
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17669 
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17671  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
17672  * v[eN,ebN,k,2]=zvelocity
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17674  * else:
17675  * for eN in range(x.shape[0]):
17676  */
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17688  PyTuple_SET_ITEM(__pyx_t_32, 1, __pyx_t_30);
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17717 
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17719  * pi = M_PI
17720  * if v.shape[-1] == 3:
17721  * if transient == 1: # <<<<<<<<<<<<<<
17722  * for eN in range(x.shape[0]):
17723  * for ebN in range(x.shape[1]):
17724  */
17725  goto __pyx_L4;
17726  }
17727 
17728  /* "subsurfaceTransportFunctions.pyx":837
17729  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
17730  * else:
17731  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
17732  * for ebN in range(x.shape[1]):
17733  * for k in range(x.shape[2]):
17734  */
17735  /*else*/ {
17736  __pyx_t_2 = (__pyx_v_x->dimensions[0]);
17737  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
17738  __pyx_v_eN = __pyx_t_3;
17739 
17740  /* "subsurfaceTransportFunctions.pyx":838
17741  * else:
17742  * for eN in range(x.shape[0]):
17743  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
17744  * for k in range(x.shape[2]):
17745  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
17746  */
17747  __pyx_t_4 = (__pyx_v_x->dimensions[1]);
17748  for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
17749  __pyx_v_ebN = __pyx_t_5;
17750 
17751  /* "subsurfaceTransportFunctions.pyx":839
17752  * for eN in range(x.shape[0]):
17753  * for ebN in range(x.shape[1]):
17754  * for k in range(x.shape[2]): # <<<<<<<<<<<<<<
17755  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
17756  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
17757  */
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17760  __pyx_v_k = __pyx_t_7;
17761 
17762  /* "subsurfaceTransportFunctions.pyx":840
17763  * for ebN in range(x.shape[1]):
17764  * for k in range(x.shape[2]):
17765  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc) # <<<<<<<<<<<<<<
17766  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
17767  * v[eN,ebN,k,2]=zvelocity
17768  */
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17770  __pyx_t_36 = __pyx_v_ebN;
17771  __pyx_t_37 = __pyx_v_k;
17772  __pyx_t_38 = 1;
17773  __pyx_t_12 = -1;
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17776  if (unlikely(__pyx_t_35 < 0)) __pyx_t_12 = 0;
17777  } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_12 = 0;
17778  if (__pyx_t_36 < 0) {
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17780  if (unlikely(__pyx_t_36 < 0)) __pyx_t_12 = 1;
17781  } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_12 = 1;
17782  if (__pyx_t_37 < 0) {
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17784  if (unlikely(__pyx_t_37 < 0)) __pyx_t_12 = 2;
17785  } else if (unlikely(__pyx_t_37 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_12 = 2;
17786  if (__pyx_t_38 < 0) {
17787  __pyx_t_38 += __pyx_pybuffernd_x.diminfo[3].shape;
17788  if (unlikely(__pyx_t_38 < 0)) __pyx_t_12 = 3;
17789  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_x.diminfo[3].shape)) __pyx_t_12 = 3;
17790  if (unlikely(__pyx_t_12 != -1)) {
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17792  __PYX_ERR(0, 840, __pyx_L1_error)
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17794  __pyx_t_39 = __pyx_v_eN;
17795  __pyx_t_40 = __pyx_v_ebN;
17796  __pyx_t_41 = __pyx_v_k;
17797  __pyx_t_42 = 0;
17798  __pyx_t_12 = -1;
17799  if (__pyx_t_39 < 0) {
17800  __pyx_t_39 += __pyx_pybuffernd_v.diminfo[0].shape;
17801  if (unlikely(__pyx_t_39 < 0)) __pyx_t_12 = 0;
17802  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_12 = 0;
17803  if (__pyx_t_40 < 0) {
17804  __pyx_t_40 += __pyx_pybuffernd_v.diminfo[1].shape;
17805  if (unlikely(__pyx_t_40 < 0)) __pyx_t_12 = 1;
17806  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_12 = 1;
17807  if (__pyx_t_41 < 0) {
17808  __pyx_t_41 += __pyx_pybuffernd_v.diminfo[2].shape;
17809  if (unlikely(__pyx_t_41 < 0)) __pyx_t_12 = 2;
17810  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_12 = 2;
17811  if (__pyx_t_42 < 0) {
17812  __pyx_t_42 += __pyx_pybuffernd_v.diminfo[3].shape;
17813  if (unlikely(__pyx_t_42 < 0)) __pyx_t_12 = 3;
17814  } else if (unlikely(__pyx_t_42 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_12 = 3;
17815  if (unlikely(__pyx_t_12 != -1)) {
17816  __Pyx_RaiseBufferIndexError(__pyx_t_12);
17817  __PYX_ERR(0, 840, __pyx_L1_error)
17818  }
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17820 
17821  /* "subsurfaceTransportFunctions.pyx":841
17822  * for k in range(x.shape[2]):
17823  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
17824  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
17825  * v[eN,ebN,k,2]=zvelocity
17826  * else:
17827  */
17828  __pyx_t_43 = __pyx_v_eN;
17829  __pyx_t_44 = __pyx_v_ebN;
17830  __pyx_t_45 = __pyx_v_k;
17831  __pyx_t_46 = 0;
17832  __pyx_t_12 = -1;
17833  if (__pyx_t_43 < 0) {
17834  __pyx_t_43 += __pyx_pybuffernd_x.diminfo[0].shape;
17835  if (unlikely(__pyx_t_43 < 0)) __pyx_t_12 = 0;
17836  } else if (unlikely(__pyx_t_43 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_12 = 0;
17837  if (__pyx_t_44 < 0) {
17838  __pyx_t_44 += __pyx_pybuffernd_x.diminfo[1].shape;
17839  if (unlikely(__pyx_t_44 < 0)) __pyx_t_12 = 1;
17840  } else if (unlikely(__pyx_t_44 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_12 = 1;
17841  if (__pyx_t_45 < 0) {
17842  __pyx_t_45 += __pyx_pybuffernd_x.diminfo[2].shape;
17843  if (unlikely(__pyx_t_45 < 0)) __pyx_t_12 = 2;
17844  } else if (unlikely(__pyx_t_45 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_12 = 2;
17845  if (__pyx_t_46 < 0) {
17846  __pyx_t_46 += __pyx_pybuffernd_x.diminfo[3].shape;
17847  if (unlikely(__pyx_t_46 < 0)) __pyx_t_12 = 3;
17848  } else if (unlikely(__pyx_t_46 >= __pyx_pybuffernd_x.diminfo[3].shape)) __pyx_t_12 = 3;
17849  if (unlikely(__pyx_t_12 != -1)) {
17850  __Pyx_RaiseBufferIndexError(__pyx_t_12);
17851  __PYX_ERR(0, 841, __pyx_L1_error)
17852  }
17853  __pyx_t_47 = __pyx_v_eN;
17854  __pyx_t_48 = __pyx_v_ebN;
17855  __pyx_t_49 = __pyx_v_k;
17856  __pyx_t_50 = 1;
17857  __pyx_t_12 = -1;
17858  if (__pyx_t_47 < 0) {
17859  __pyx_t_47 += __pyx_pybuffernd_v.diminfo[0].shape;
17860  if (unlikely(__pyx_t_47 < 0)) __pyx_t_12 = 0;
17861  } else if (unlikely(__pyx_t_47 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_12 = 0;
17862  if (__pyx_t_48 < 0) {
17863  __pyx_t_48 += __pyx_pybuffernd_v.diminfo[1].shape;
17864  if (unlikely(__pyx_t_48 < 0)) __pyx_t_12 = 1;
17865  } else if (unlikely(__pyx_t_48 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_12 = 1;
17866  if (__pyx_t_49 < 0) {
17867  __pyx_t_49 += __pyx_pybuffernd_v.diminfo[2].shape;
17868  if (unlikely(__pyx_t_49 < 0)) __pyx_t_12 = 2;
17869  } else if (unlikely(__pyx_t_49 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_12 = 2;
17870  if (__pyx_t_50 < 0) {
17871  __pyx_t_50 += __pyx_pybuffernd_v.diminfo[3].shape;
17872  if (unlikely(__pyx_t_50 < 0)) __pyx_t_12 = 3;
17873  } else if (unlikely(__pyx_t_50 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_12 = 3;
17874  if (unlikely(__pyx_t_12 != -1)) {
17875  __Pyx_RaiseBufferIndexError(__pyx_t_12);
17876  __PYX_ERR(0, 841, __pyx_L1_error)
17877  }
17878  *__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_47, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_48, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_49, __pyx_pybuffernd_v.diminfo[2].strides, __pyx_t_50, __pyx_pybuffernd_v.diminfo[3].strides) = ((2.0 * __pyx_v_pi) * (__pyx_v_yc - (*__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_x.rcbuffer->pybuffer.buf, __pyx_t_43, __pyx_pybuffernd_x.diminfo[0].strides, __pyx_t_44, __pyx_pybuffernd_x.diminfo[1].strides, __pyx_t_45, __pyx_pybuffernd_x.diminfo[2].strides, __pyx_t_46, __pyx_pybuffernd_x.diminfo[3].strides))));
17879 
17880  /* "subsurfaceTransportFunctions.pyx":842
17881  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
17882  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
17883  * v[eN,ebN,k,2]=zvelocity # <<<<<<<<<<<<<<
17884  * else:
17885  * assert v.shape[-1] == 2
17886  */
17887  __pyx_t_51 = __pyx_v_eN;
17888  __pyx_t_52 = __pyx_v_ebN;
17889  __pyx_t_53 = __pyx_v_k;
17890  __pyx_t_54 = 2;
17891  __pyx_t_12 = -1;
17892  if (__pyx_t_51 < 0) {
17893  __pyx_t_51 += __pyx_pybuffernd_v.diminfo[0].shape;
17894  if (unlikely(__pyx_t_51 < 0)) __pyx_t_12 = 0;
17895  } else if (unlikely(__pyx_t_51 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_12 = 0;
17896  if (__pyx_t_52 < 0) {
17897  __pyx_t_52 += __pyx_pybuffernd_v.diminfo[1].shape;
17898  if (unlikely(__pyx_t_52 < 0)) __pyx_t_12 = 1;
17899  } else if (unlikely(__pyx_t_52 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_12 = 1;
17900  if (__pyx_t_53 < 0) {
17901  __pyx_t_53 += __pyx_pybuffernd_v.diminfo[2].shape;
17902  if (unlikely(__pyx_t_53 < 0)) __pyx_t_12 = 2;
17903  } else if (unlikely(__pyx_t_53 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_12 = 2;
17904  if (__pyx_t_54 < 0) {
17905  __pyx_t_54 += __pyx_pybuffernd_v.diminfo[3].shape;
17906  if (unlikely(__pyx_t_54 < 0)) __pyx_t_12 = 3;
17907  } else if (unlikely(__pyx_t_54 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_12 = 3;
17908  if (unlikely(__pyx_t_12 != -1)) {
17909  __Pyx_RaiseBufferIndexError(__pyx_t_12);
17910  __PYX_ERR(0, 842, __pyx_L1_error)
17911  }
17912  *__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_51, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_52, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_53, __pyx_pybuffernd_v.diminfo[2].strides, __pyx_t_54, __pyx_pybuffernd_v.diminfo[3].strides) = __pyx_v_zvelocity;
17913  }
17914  }
17915  }
17916  }
17917  __pyx_L4:;
17918 
17919  /* "subsurfaceTransportFunctions.pyx":827
17920  * cdef double pi
17921  * pi = M_PI
17922  * if v.shape[-1] == 3: # <<<<<<<<<<<<<<
17923  * if transient == 1:
17924  * for eN in range(x.shape[0]):
17925  */
17926  goto __pyx_L3;
17927  }
17928 
17929  /* "subsurfaceTransportFunctions.pyx":844
17930  * v[eN,ebN,k,2]=zvelocity
17931  * else:
17932  * assert v.shape[-1] == 2 # <<<<<<<<<<<<<<
17933  * if transient == 1:
17934  * for eN in range(x.shape[0]):
17935  */
17936  /*else*/ {
17937  #ifndef CYTHON_WITHOUT_ASSERTIONS
17938  if (unlikely(!Py_OptimizeFlag)) {
17939  if (unlikely(!(((__pyx_v_v->dimensions[-1L]) == 2) != 0))) {
17940  PyErr_SetNone(PyExc_AssertionError);
17941  __PYX_ERR(0, 844, __pyx_L1_error)
17942  }
17943  }
17944  #endif
17945 
17946  /* "subsurfaceTransportFunctions.pyx":845
17947  * else:
17948  * assert v.shape[-1] == 2
17949  * if transient == 1: # <<<<<<<<<<<<<<
17950  * for eN in range(x.shape[0]):
17951  * for ebN in range(x.shape[1]):
17952  */
17953  __pyx_t_1 = ((__pyx_v_transient == 1) != 0);
17954  if (__pyx_t_1) {
17955 
17956  /* "subsurfaceTransportFunctions.pyx":846
17957  * assert v.shape[-1] == 2
17958  * if transient == 1:
17959  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
17960  * for ebN in range(x.shape[1]):
17961  * for k in range(x.shape[2]):
17962  */
17963  __pyx_t_2 = (__pyx_v_x->dimensions[0]);
17964  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
17965  __pyx_v_eN = __pyx_t_3;
17966 
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17968  * if transient == 1:
17969  * for eN in range(x.shape[0]):
17970  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
17971  * for k in range(x.shape[2]):
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17973  */
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17975  for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
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17977 
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17979  * for eN in range(x.shape[0]):
17980  * for ebN in range(x.shape[1]):
17981  * for k in range(x.shape[2]): # <<<<<<<<<<<<<<
17982  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
17983  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
17984  */
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17990  * for ebN in range(x.shape[1]):
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17993  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
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18049  * for k in range(x.shape[2]):
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18051  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
18052  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
18053  * else:
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18057  __pyx_t_65 = __pyx_v_k;
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18106 
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18108  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18109  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
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18111  * else:
18112  * for eN in range(x.shape[0]):
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18157  * assert v.shape[-1] == 2
18158  * if transient == 1: # <<<<<<<<<<<<<<
18159  * for eN in range(x.shape[0]):
18160  * for ebN in range(x.shape[1]):
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18162  goto __pyx_L17;
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18164 
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18166  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
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18169  * for ebN in range(x.shape[1]):
18170  * for k in range(x.shape[2]):
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18178  * else:
18179  * for eN in range(x.shape[0]):
18180  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
18181  * for k in range(x.shape[2]):
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18187 
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18189  * for eN in range(x.shape[0]):
18190  * for ebN in range(x.shape[1]):
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18192  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18193  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
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18200  * for ebN in range(x.shape[1]):
18201  * for k in range(x.shape[2]):
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18203  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
18204  *
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18566 
18567  /* "subsurfaceTransportFunctions.pyx":869
18568  * cdef int eN,k
18569  * cdef double pi
18570  * pi = M_PI # <<<<<<<<<<<<<<
18571  * if transient == 1:
18572  * for eN in range(x.shape[0]):
18573  */
18574  __pyx_v_pi = M_PI;
18575 
18576  /* "subsurfaceTransportFunctions.pyx":870
18577  * cdef double pi
18578  * pi = M_PI
18579  * if transient == 1: # <<<<<<<<<<<<<<
18580  * for eN in range(x.shape[0]):
18581  * for k in range(x.shape[1]):
18582  */
18583  __pyx_t_1 = ((__pyx_v_transient == 1) != 0);
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18585 
18586  /* "subsurfaceTransportFunctions.pyx":871
18587  * pi = M_PI
18588  * if transient == 1:
18589  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
18590  * for k in range(x.shape[1]):
18591  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
18592  */
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18596 
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18598  * if transient == 1:
18599  * for eN in range(x.shape[0]):
18600  * for k in range(x.shape[1]): # <<<<<<<<<<<<<<
18601  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
18602  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
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18607 
18608  /* "subsurfaceTransportFunctions.pyx":873
18609  * for eN in range(x.shape[0]):
18610  * for k in range(x.shape[1]):
18611  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc) # <<<<<<<<<<<<<<
18612  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
18613  * v[eN,k,2]=zVelocity
18614  */
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18616  __pyx_t_7 = __pyx_v_k;
18617  __pyx_t_8 = 1;
18618  __pyx_t_9 = -1;
18619  if (__pyx_t_6 < 0) {
18620  __pyx_t_6 += __pyx_pybuffernd_x.diminfo[0].shape;
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18623  if (__pyx_t_7 < 0) {
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18626  } else if (unlikely(__pyx_t_7 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_9 = 1;
18627  if (__pyx_t_8 < 0) {
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18632  __Pyx_RaiseBufferIndexError(__pyx_t_9);
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18636  __pyx_t_11 = __pyx_v_k;
18637  __pyx_t_12 = 0;
18638  __pyx_t_9 = -1;
18639  if (__pyx_t_10 < 0) {
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18646  } else if (unlikely(__pyx_t_11 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_9 = 1;
18647  if (__pyx_t_12 < 0) {
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18650  } else if (unlikely(__pyx_t_12 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_9 = 2;
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18656 
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18658  * for k in range(x.shape[1]):
18659  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
18660  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0]) # <<<<<<<<<<<<<<
18661  * v[eN,k,2]=zVelocity
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18665  __pyx_t_14 = __pyx_v_k;
18666  __pyx_t_15 = 0;
18667  __pyx_t_9 = -1;
18668  if (__pyx_t_13 < 0) {
18669  __pyx_t_13 += __pyx_pybuffernd_x.diminfo[0].shape;
18670  if (unlikely(__pyx_t_13 < 0)) __pyx_t_9 = 0;
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18675  } else if (unlikely(__pyx_t_14 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_9 = 1;
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18680  if (unlikely(__pyx_t_9 != -1)) {
18681  __Pyx_RaiseBufferIndexError(__pyx_t_9);
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18685  __pyx_t_17 = __pyx_v_k;
18686  __pyx_t_18 = 1;
18687  __pyx_t_9 = -1;
18688  if (__pyx_t_16 < 0) {
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18692  if (__pyx_t_17 < 0) {
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18695  } else if (unlikely(__pyx_t_17 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_9 = 1;
18696  if (__pyx_t_18 < 0) {
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18699  } else if (unlikely(__pyx_t_18 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_9 = 2;
18700  if (unlikely(__pyx_t_9 != -1)) {
18701  __Pyx_RaiseBufferIndexError(__pyx_t_9);
18702  __PYX_ERR(0, 874, __pyx_L1_error)
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18705 
18706  /* "subsurfaceTransportFunctions.pyx":875
18707  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
18708  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
18709  * v[eN,k,2]=zVelocity # <<<<<<<<<<<<<<
18710  * v[eN,k,:]*=clock*cos(pi*t/(tForReversal*2.0))
18711  * else:
18712  */
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18714  __pyx_t_20 = __pyx_v_k;
18715  __pyx_t_21 = 2;
18716  __pyx_t_9 = -1;
18717  if (__pyx_t_19 < 0) {
18718  __pyx_t_19 += __pyx_pybuffernd_v.diminfo[0].shape;
18719  if (unlikely(__pyx_t_19 < 0)) __pyx_t_9 = 0;
18720  } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_9 = 0;
18721  if (__pyx_t_20 < 0) {
18722  __pyx_t_20 += __pyx_pybuffernd_v.diminfo[1].shape;
18723  if (unlikely(__pyx_t_20 < 0)) __pyx_t_9 = 1;
18724  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_9 = 1;
18725  if (__pyx_t_21 < 0) {
18726  __pyx_t_21 += __pyx_pybuffernd_v.diminfo[2].shape;
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18728  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_9 = 2;
18729  if (unlikely(__pyx_t_9 != -1)) {
18730  __Pyx_RaiseBufferIndexError(__pyx_t_9);
18731  __PYX_ERR(0, 875, __pyx_L1_error)
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18734 
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18736  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
18737  * v[eN,k,2]=zVelocity
18738  * v[eN,k,:]*=clock*cos(pi*t/(tForReversal*2.0)) # <<<<<<<<<<<<<<
18739  * else:
18740  * for eN in range(x.shape[0]):
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18750  __Pyx_GIVEREF(__pyx_t_23);
18751  PyTuple_SET_ITEM(__pyx_t_24, 1, __pyx_t_23);
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18775  }
18776 
18777  /* "subsurfaceTransportFunctions.pyx":870
18778  * cdef double pi
18779  * pi = M_PI
18780  * if transient == 1: # <<<<<<<<<<<<<<
18781  * for eN in range(x.shape[0]):
18782  * for k in range(x.shape[1]):
18783  */
18784  goto __pyx_L3;
18785  }
18786 
18787  /* "subsurfaceTransportFunctions.pyx":878
18788  * v[eN,k,:]*=clock*cos(pi*t/(tForReversal*2.0))
18789  * else:
18790  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
18791  * for k in range(x.shape[1]):
18792  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
18793  */
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18795  __pyx_t_2 = (__pyx_v_x->dimensions[0]);
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18797  __pyx_v_eN = __pyx_t_3;
18798 
18799  /* "subsurfaceTransportFunctions.pyx":879
18800  * else:
18801  * for eN in range(x.shape[0]):
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18803  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
18804  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
18805  */
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18808  __pyx_v_k = __pyx_t_5;
18809 
18810  /* "subsurfaceTransportFunctions.pyx":880
18811  * for eN in range(x.shape[0]):
18812  * for k in range(x.shape[1]):
18813  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc) # <<<<<<<<<<<<<<
18814  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
18815  * v[eN,k,2]=zVelocity
18816  */
18817  __pyx_t_28 = __pyx_v_eN;
18818  __pyx_t_29 = __pyx_v_k;
18819  __pyx_t_30 = 1;
18820  __pyx_t_9 = -1;
18821  if (__pyx_t_28 < 0) {
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18823  if (unlikely(__pyx_t_28 < 0)) __pyx_t_9 = 0;
18824  } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_9 = 0;
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18827  if (unlikely(__pyx_t_29 < 0)) __pyx_t_9 = 1;
18828  } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_9 = 1;
18829  if (__pyx_t_30 < 0) {
18830  __pyx_t_30 += __pyx_pybuffernd_x.diminfo[2].shape;
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18837  __pyx_t_31 = __pyx_v_eN;
18838  __pyx_t_32 = __pyx_v_k;
18839  __pyx_t_33 = 0;
18840  __pyx_t_9 = -1;
18841  if (__pyx_t_31 < 0) {
18842  __pyx_t_31 += __pyx_pybuffernd_v.diminfo[0].shape;
18843  if (unlikely(__pyx_t_31 < 0)) __pyx_t_9 = 0;
18844  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_9 = 0;
18845  if (__pyx_t_32 < 0) {
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18847  if (unlikely(__pyx_t_32 < 0)) __pyx_t_9 = 1;
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18849  if (__pyx_t_33 < 0) {
18850  __pyx_t_33 += __pyx_pybuffernd_v.diminfo[2].shape;
18851  if (unlikely(__pyx_t_33 < 0)) __pyx_t_9 = 2;
18852  } else if (unlikely(__pyx_t_33 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_9 = 2;
18853  if (unlikely(__pyx_t_9 != -1)) {
18854  __Pyx_RaiseBufferIndexError(__pyx_t_9);
18855  __PYX_ERR(0, 880, __pyx_L1_error)
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18858 
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19196 
19197  /* "subsurfaceTransportFunctions.pyx":894
19198  * cdef int eN,ebN,k
19199  * cdef double pi
19200  * pi = M_PI # <<<<<<<<<<<<<<
19201  * if transient == 1:
19202  * for eN in range(x.shape[0]):
19203  */
19204  __pyx_v_pi = M_PI;
19205 
19206  /* "subsurfaceTransportFunctions.pyx":895
19207  * cdef double pi
19208  * pi = M_PI
19209  * if transient == 1: # <<<<<<<<<<<<<<
19210  * for eN in range(x.shape[0]):
19211  * for ebN in range(x.shape[1]):
19212  */
19213  __pyx_t_1 = ((__pyx_v_transient == 1) != 0);
19214  if (__pyx_t_1) {
19215 
19216  /* "subsurfaceTransportFunctions.pyx":896
19217  * pi = M_PI
19218  * if transient == 1:
19219  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
19220  * for ebN in range(x.shape[1]):
19221  * for k in range(x.shape[2]):
19222  */
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19224  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
19225  __pyx_v_eN = __pyx_t_3;
19226 
19227  /* "subsurfaceTransportFunctions.pyx":897
19228  * if transient == 1:
19229  * for eN in range(x.shape[0]):
19230  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
19231  * for k in range(x.shape[2]):
19232  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
19233  */
19234  __pyx_t_4 = (__pyx_v_x->dimensions[1]);
19235  for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
19236  __pyx_v_ebN = __pyx_t_5;
19237 
19238  /* "subsurfaceTransportFunctions.pyx":898
19239  * for eN in range(x.shape[0]):
19240  * for ebN in range(x.shape[1]):
19241  * for k in range(x.shape[2]): # <<<<<<<<<<<<<<
19242  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
19243  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
19244  */
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19247  __pyx_v_k = __pyx_t_7;
19248 
19249  /* "subsurfaceTransportFunctions.pyx":899
19250  * for ebN in range(x.shape[1]):
19251  * for k in range(x.shape[2]):
19252  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc) # <<<<<<<<<<<<<<
19253  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
19254  * v[eN,ebN,k,2]=zVelocity
19255  */
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19257  __pyx_t_9 = __pyx_v_ebN;
19258  __pyx_t_10 = __pyx_v_k;
19259  __pyx_t_11 = 1;
19260  __pyx_t_12 = -1;
19261  if (__pyx_t_8 < 0) {
19262  __pyx_t_8 += __pyx_pybuffernd_x.diminfo[0].shape;
19263  if (unlikely(__pyx_t_8 < 0)) __pyx_t_12 = 0;
19264  } else if (unlikely(__pyx_t_8 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_12 = 0;
19265  if (__pyx_t_9 < 0) {
19266  __pyx_t_9 += __pyx_pybuffernd_x.diminfo[1].shape;
19267  if (unlikely(__pyx_t_9 < 0)) __pyx_t_12 = 1;
19268  } else if (unlikely(__pyx_t_9 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_12 = 1;
19269  if (__pyx_t_10 < 0) {
19270  __pyx_t_10 += __pyx_pybuffernd_x.diminfo[2].shape;
19271  if (unlikely(__pyx_t_10 < 0)) __pyx_t_12 = 2;
19272  } else if (unlikely(__pyx_t_10 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_12 = 2;
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19283  __pyx_t_15 = __pyx_v_k;
19284  __pyx_t_16 = 0;
19285  __pyx_t_12 = -1;
19286  if (__pyx_t_13 < 0) {
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19289  } else if (unlikely(__pyx_t_13 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_12 = 0;
19290  if (__pyx_t_14 < 0) {
19291  __pyx_t_14 += __pyx_pybuffernd_v.diminfo[1].shape;
19292  if (unlikely(__pyx_t_14 < 0)) __pyx_t_12 = 1;
19293  } else if (unlikely(__pyx_t_14 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_12 = 1;
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19295  __pyx_t_15 += __pyx_pybuffernd_v.diminfo[2].shape;
19296  if (unlikely(__pyx_t_15 < 0)) __pyx_t_12 = 2;
19297  } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_12 = 2;
19298  if (__pyx_t_16 < 0) {
19299  __pyx_t_16 += __pyx_pybuffernd_v.diminfo[3].shape;
19300  if (unlikely(__pyx_t_16 < 0)) __pyx_t_12 = 3;
19301  } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_12 = 3;
19302  if (unlikely(__pyx_t_12 != -1)) {
19303  __Pyx_RaiseBufferIndexError(__pyx_t_12);
19304  __PYX_ERR(0, 899, __pyx_L1_error)
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19307 
19308  /* "subsurfaceTransportFunctions.pyx":900
19309  * for k in range(x.shape[2]):
19310  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
19311  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
19312  * v[eN,ebN,k,2]=zVelocity
19313  * v[eN,ebN,k,:]*=clock*cos(pi*t/(tForReversal*2.0))
19314  */
19315  __pyx_t_17 = __pyx_v_eN;
19316  __pyx_t_18 = __pyx_v_ebN;
19317  __pyx_t_19 = __pyx_v_k;
19318  __pyx_t_20 = 0;
19319  __pyx_t_12 = -1;
19320  if (__pyx_t_17 < 0) {
19321  __pyx_t_17 += __pyx_pybuffernd_x.diminfo[0].shape;
19322  if (unlikely(__pyx_t_17 < 0)) __pyx_t_12 = 0;
19323  } else if (unlikely(__pyx_t_17 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_12 = 0;
19324  if (__pyx_t_18 < 0) {
19325  __pyx_t_18 += __pyx_pybuffernd_x.diminfo[1].shape;
19326  if (unlikely(__pyx_t_18 < 0)) __pyx_t_12 = 1;
19327  } else if (unlikely(__pyx_t_18 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_12 = 1;
19328  if (__pyx_t_19 < 0) {
19329  __pyx_t_19 += __pyx_pybuffernd_x.diminfo[2].shape;
19330  if (unlikely(__pyx_t_19 < 0)) __pyx_t_12 = 2;
19331  } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_12 = 2;
19332  if (__pyx_t_20 < 0) {
19333  __pyx_t_20 += __pyx_pybuffernd_x.diminfo[3].shape;
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19335  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_x.diminfo[3].shape)) __pyx_t_12 = 3;
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19337  __Pyx_RaiseBufferIndexError(__pyx_t_12);
19338  __PYX_ERR(0, 900, __pyx_L1_error)
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19341  __pyx_t_22 = __pyx_v_ebN;
19342  __pyx_t_23 = __pyx_v_k;
19343  __pyx_t_24 = 1;
19344  __pyx_t_12 = -1;
19345  if (__pyx_t_21 < 0) {
19346  __pyx_t_21 += __pyx_pybuffernd_v.diminfo[0].shape;
19347  if (unlikely(__pyx_t_21 < 0)) __pyx_t_12 = 0;
19348  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_12 = 0;
19349  if (__pyx_t_22 < 0) {
19350  __pyx_t_22 += __pyx_pybuffernd_v.diminfo[1].shape;
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19353  if (__pyx_t_23 < 0) {
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19355  if (unlikely(__pyx_t_23 < 0)) __pyx_t_12 = 2;
19356  } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_12 = 2;
19357  if (__pyx_t_24 < 0) {
19358  __pyx_t_24 += __pyx_pybuffernd_v.diminfo[3].shape;
19359  if (unlikely(__pyx_t_24 < 0)) __pyx_t_12 = 3;
19360  } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_12 = 3;
19361  if (unlikely(__pyx_t_12 != -1)) {
19362  __Pyx_RaiseBufferIndexError(__pyx_t_12);
19363  __PYX_ERR(0, 900, __pyx_L1_error)
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19366 
19367  /* "subsurfaceTransportFunctions.pyx":901
19368  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
19369  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
19370  * v[eN,ebN,k,2]=zVelocity # <<<<<<<<<<<<<<
19371  * v[eN,ebN,k,:]*=clock*cos(pi*t/(tForReversal*2.0))
19372  * else:
19373  */
19374  __pyx_t_25 = __pyx_v_eN;
19375  __pyx_t_26 = __pyx_v_ebN;
19376  __pyx_t_27 = __pyx_v_k;
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19378  __pyx_t_12 = -1;
19379  if (__pyx_t_25 < 0) {
19380  __pyx_t_25 += __pyx_pybuffernd_v.diminfo[0].shape;
19381  if (unlikely(__pyx_t_25 < 0)) __pyx_t_12 = 0;
19382  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_12 = 0;
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19400 
19401  /* "subsurfaceTransportFunctions.pyx":902
19402  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
19403  * v[eN,ebN,k,2]=zVelocity
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19405  * else:
19406  * for eN in range(x.shape[0]):
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19417  PyTuple_SET_ITEM(__pyx_t_32, 0, __pyx_t_29);
19418  __Pyx_GIVEREF(__pyx_t_30);
19419  PyTuple_SET_ITEM(__pyx_t_32, 1, __pyx_t_30);
19420  __Pyx_GIVEREF(__pyx_t_31);
19421  PyTuple_SET_ITEM(__pyx_t_32, 2, __pyx_t_31);
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19426  __pyx_t_30 = 0;
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19428  __pyx_t_31 = PyObject_GetItem(((PyObject *)__pyx_v_v), __pyx_t_32); if (unlikely(!__pyx_t_31)) __PYX_ERR(0, 902, __pyx_L1_error)
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19448 
19449  /* "subsurfaceTransportFunctions.pyx":895
19450  * cdef double pi
19451  * pi = M_PI
19452  * if transient == 1: # <<<<<<<<<<<<<<
19453  * for eN in range(x.shape[0]):
19454  * for ebN in range(x.shape[1]):
19455  */
19456  goto __pyx_L3;
19457  }
19458 
19459  /* "subsurfaceTransportFunctions.pyx":904
19460  * v[eN,ebN,k,:]*=clock*cos(pi*t/(tForReversal*2.0))
19461  * else:
19462  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
19463  * for ebN in range(x.shape[1]):
19464  * for k in range(x.shape[2]):
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19484  * for ebN in range(x.shape[1]):
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19486  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
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19553  * for k in range(x.shape[2]):
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19612  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
19613  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
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19615  *
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19654  * double t,
19655  * double tForReversal,
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19828  * cdef int eN,k
19829  * cdef double pi,one8
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19831  * one8 = 1.0/8.0
19832  * for eN in range(x.shape[0]):
19833  */
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19835 
19836  /* "subsurfaceTransportFunctions.pyx":917
19837  * cdef double pi,one8
19838  * pi = M_PI
19839  * one8 = 1.0/8.0 # <<<<<<<<<<<<<<
19840  * for eN in range(x.shape[0]):
19841  * for k in range(x.shape[1]):
19842  */
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19868  * for eN in range(x.shape[0]):
19869  * for k in range(x.shape[1]):
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19871  * v[eN,k,1]=-cos(pi*one8*t)*sin(2.0*pi*x[eN,k,0])*sin(pi*x[eN,k,1])*sin(pi*x[eN,k,1]);
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19955 
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19957  * for k in range(x.shape[1]):
19958  * v[eN,k,0]= cos(pi*one8*t)*sin(2.0*pi*x[eN,k,1])*sin(pi*x[eN,k,0])*sin(pi*x[eN,k,0]);
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19960  *
19961  *
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20046 
20047  /* "subsurfaceTransportFunctions.pyx":911
20048  * v[eN,ebN,k,2]=zVelocity
20049  *
20050  * def vortexElementVelocityEval3(double t, # <<<<<<<<<<<<<<
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20505  *
20506  * def vortexElementVelocityEval4(double t, # <<<<<<<<<<<<<<
20507  * numpy.ndarray[DTYPE_t,ndim=4] x,
20508  * numpy.ndarray[DTYPE_t,ndim=4] v):
20509  */
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20692  * raise ValueError(u"ndarray is not C contiguous")
20693  */
20694  if (__pyx_t_1) {
20695 
20696  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":218
20697  * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS)
20698  * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)):
20699  * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<<
20700  *
20701  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
20702  */
20703  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__9, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 218, __pyx_L1_error)
20704  __Pyx_GOTREF(__pyx_t_3);
20705  __Pyx_Raise(__pyx_t_3, 0, 0, 0);
20706  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
20707  __PYX_ERR(1, 218, __pyx_L1_error)
20708 
20709  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":216
20710  * copy_shape = 0
20711  *
20712  * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<<
20713  * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)):
20714  * raise ValueError(u"ndarray is not C contiguous")
20715  */
20716  }
20717 
20718  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":220
20719  * raise ValueError(u"ndarray is not C contiguous")
20720  *
20721  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<<
20722  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)):
20723  * raise ValueError(u"ndarray is not Fortran contiguous")
20724  */
20725  __pyx_t_2 = (((__pyx_v_flags & PyBUF_F_CONTIGUOUS) == PyBUF_F_CONTIGUOUS) != 0);
20726  if (__pyx_t_2) {
20727  } else {
20728  __pyx_t_1 = __pyx_t_2;
20729  goto __pyx_L9_bool_binop_done;
20730  }
20731 
20732  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":221
20733  *
20734  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
20735  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): # <<<<<<<<<<<<<<
20736  * raise ValueError(u"ndarray is not Fortran contiguous")
20737  *
20738  */
20739  __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0);
20740  __pyx_t_1 = __pyx_t_2;
20741  __pyx_L9_bool_binop_done:;
20742 
20743  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":220
20744  * raise ValueError(u"ndarray is not C contiguous")
20745  *
20746  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<<
20747  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)):
20748  * raise ValueError(u"ndarray is not Fortran contiguous")
20749  */
20750  if (__pyx_t_1) {
20751 
20752  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":222
20753  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
20754  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)):
20755  * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<<
20756  *
20757  * info.buf = PyArray_DATA(self)
20758  */
20759  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__10, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 222, __pyx_L1_error)
20760  __Pyx_GOTREF(__pyx_t_3);
20761  __Pyx_Raise(__pyx_t_3, 0, 0, 0);
20762  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
20763  __PYX_ERR(1, 222, __pyx_L1_error)
20764 
20765  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":220
20766  * raise ValueError(u"ndarray is not C contiguous")
20767  *
20768  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<<
20769  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)):
20770  * raise ValueError(u"ndarray is not Fortran contiguous")
20771  */
20772  }
20773 
20774  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":224
20775  * raise ValueError(u"ndarray is not Fortran contiguous")
20776  *
20777  * info.buf = PyArray_DATA(self) # <<<<<<<<<<<<<<
20778  * info.ndim = ndim
20779  * if copy_shape:
20780  */
20781  __pyx_v_info->buf = PyArray_DATA(__pyx_v_self);
20782 
20783  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":225
20784  *
20785  * info.buf = PyArray_DATA(self)
20786  * info.ndim = ndim # <<<<<<<<<<<<<<
20787  * if copy_shape:
20788  * # Allocate new buffer for strides and shape info.
20789  */
20790  __pyx_v_info->ndim = __pyx_v_ndim;
20791 
20792  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":226
20793  * info.buf = PyArray_DATA(self)
20794  * info.ndim = ndim
20795  * if copy_shape: # <<<<<<<<<<<<<<
20796  * # Allocate new buffer for strides and shape info.
20797  * # This is allocated as one block, strides first.
20798  */
20799  __pyx_t_1 = (__pyx_v_copy_shape != 0);
20800  if (__pyx_t_1) {
20801 
20802  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":229
20803  * # Allocate new buffer for strides and shape info.
20804  * # This is allocated as one block, strides first.
20805  * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2) # <<<<<<<<<<<<<<
20806  * info.shape = info.strides + ndim
20807  * for i in range(ndim):
20808  */
20809  __pyx_v_info->strides = ((Py_ssize_t *)malloc((((sizeof(Py_ssize_t)) * ((size_t)__pyx_v_ndim)) * 2)));
20810 
20811  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":230
20812  * # This is allocated as one block, strides first.
20813  * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2)
20814  * info.shape = info.strides + ndim # <<<<<<<<<<<<<<
20815  * for i in range(ndim):
20816  * info.strides[i] = PyArray_STRIDES(self)[i]
20817  */
20818  __pyx_v_info->shape = (__pyx_v_info->strides + __pyx_v_ndim);
20819 
20820  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":231
20821  * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2)
20822  * info.shape = info.strides + ndim
20823  * for i in range(ndim): # <<<<<<<<<<<<<<
20824  * info.strides[i] = PyArray_STRIDES(self)[i]
20825  * info.shape[i] = PyArray_DIMS(self)[i]
20826  */
20827  __pyx_t_4 = __pyx_v_ndim;
20828  for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
20829  __pyx_v_i = __pyx_t_5;
20830 
20831  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":232
20832  * info.shape = info.strides + ndim
20833  * for i in range(ndim):
20834  * info.strides[i] = PyArray_STRIDES(self)[i] # <<<<<<<<<<<<<<
20835  * info.shape[i] = PyArray_DIMS(self)[i]
20836  * else:
20837  */
20838  (__pyx_v_info->strides[__pyx_v_i]) = (PyArray_STRIDES(__pyx_v_self)[__pyx_v_i]);
20839 
20840  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":233
20841  * for i in range(ndim):
20842  * info.strides[i] = PyArray_STRIDES(self)[i]
20843  * info.shape[i] = PyArray_DIMS(self)[i] # <<<<<<<<<<<<<<
20844  * else:
20845  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
20846  */
20847  (__pyx_v_info->shape[__pyx_v_i]) = (PyArray_DIMS(__pyx_v_self)[__pyx_v_i]);
20848  }
20849 
20850  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":226
20851  * info.buf = PyArray_DATA(self)
20852  * info.ndim = ndim
20853  * if copy_shape: # <<<<<<<<<<<<<<
20854  * # Allocate new buffer for strides and shape info.
20855  * # This is allocated as one block, strides first.
20856  */
20857  goto __pyx_L11;
20858  }
20859 
20860  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":235
20861  * info.shape[i] = PyArray_DIMS(self)[i]
20862  * else:
20863  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) # <<<<<<<<<<<<<<
20864  * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
20865  * info.suboffsets = NULL
20866  */
20867  /*else*/ {
20868  __pyx_v_info->strides = ((Py_ssize_t *)PyArray_STRIDES(__pyx_v_self));
20869 
20870  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":236
20871  * else:
20872  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
20873  * info.shape = <Py_ssize_t*>PyArray_DIMS(self) # <<<<<<<<<<<<<<
20874  * info.suboffsets = NULL
20875  * info.itemsize = PyArray_ITEMSIZE(self)
20876  */
20877  __pyx_v_info->shape = ((Py_ssize_t *)PyArray_DIMS(__pyx_v_self));
20878  }
20879  __pyx_L11:;
20880 
20881  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":237
20882  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
20883  * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
20884  * info.suboffsets = NULL # <<<<<<<<<<<<<<
20885  * info.itemsize = PyArray_ITEMSIZE(self)
20886  * info.readonly = not PyArray_ISWRITEABLE(self)
20887  */
20888  __pyx_v_info->suboffsets = NULL;
20889 
20890  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":238
20891  * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
20892  * info.suboffsets = NULL
20893  * info.itemsize = PyArray_ITEMSIZE(self) # <<<<<<<<<<<<<<
20894  * info.readonly = not PyArray_ISWRITEABLE(self)
20895  *
20896  */
20897  __pyx_v_info->itemsize = PyArray_ITEMSIZE(__pyx_v_self);
20898 
20899  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":239
20900  * info.suboffsets = NULL
20901  * info.itemsize = PyArray_ITEMSIZE(self)
20902  * info.readonly = not PyArray_ISWRITEABLE(self) # <<<<<<<<<<<<<<
20903  *
20904  * cdef int t
20905  */
20906  __pyx_v_info->readonly = (!(PyArray_ISWRITEABLE(__pyx_v_self) != 0));
20907 
20908  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":242
20909  *
20910  * cdef int t
20911  * cdef char* f = NULL # <<<<<<<<<<<<<<
20912  * cdef dtype descr = self.descr
20913  * cdef int offset
20914  */
20915  __pyx_v_f = NULL;
20916 
20917  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":243
20918  * cdef int t
20919  * cdef char* f = NULL
20920  * cdef dtype descr = self.descr # <<<<<<<<<<<<<<
20921  * cdef int offset
20922  *
20923  */
20924  __pyx_t_3 = ((PyObject *)__pyx_v_self->descr);
20925  __Pyx_INCREF(__pyx_t_3);
20926  __pyx_v_descr = ((PyArray_Descr *)__pyx_t_3);
20927  __pyx_t_3 = 0;
20928 
20929  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":246
20930  * cdef int offset
20931  *
20932  * cdef bint hasfields = PyDataType_HASFIELDS(descr) # <<<<<<<<<<<<<<
20933  *
20934  * if not hasfields and not copy_shape:
20935  */
20936  __pyx_v_hasfields = PyDataType_HASFIELDS(__pyx_v_descr);
20937 
20938  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":248
20939  * cdef bint hasfields = PyDataType_HASFIELDS(descr)
20940  *
20941  * if not hasfields and not copy_shape: # <<<<<<<<<<<<<<
20942  * # do not call releasebuffer
20943  * info.obj = None
20944  */
20945  __pyx_t_2 = ((!(__pyx_v_hasfields != 0)) != 0);
20946  if (__pyx_t_2) {
20947  } else {
20948  __pyx_t_1 = __pyx_t_2;
20949  goto __pyx_L15_bool_binop_done;
20950  }
20951  __pyx_t_2 = ((!(__pyx_v_copy_shape != 0)) != 0);
20952  __pyx_t_1 = __pyx_t_2;
20953  __pyx_L15_bool_binop_done:;
20954  if (__pyx_t_1) {
20955 
20956  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":250
20957  * if not hasfields and not copy_shape:
20958  * # do not call releasebuffer
20959  * info.obj = None # <<<<<<<<<<<<<<
20960  * else:
20961  * # need to call releasebuffer
20962  */
20963  __Pyx_INCREF(Py_None);
20964  __Pyx_GIVEREF(Py_None);
20965  __Pyx_GOTREF(__pyx_v_info->obj);
20966  __Pyx_DECREF(__pyx_v_info->obj);
20967  __pyx_v_info->obj = Py_None;
20968 
20969  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":248
20970  * cdef bint hasfields = PyDataType_HASFIELDS(descr)
20971  *
20972  * if not hasfields and not copy_shape: # <<<<<<<<<<<<<<
20973  * # do not call releasebuffer
20974  * info.obj = None
20975  */
20976  goto __pyx_L14;
20977  }
20978 
20979  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":253
20980  * else:
20981  * # need to call releasebuffer
20982  * info.obj = self # <<<<<<<<<<<<<<
20983  *
20984  * if not hasfields:
20985  */
20986  /*else*/ {
20987  __Pyx_INCREF(((PyObject *)__pyx_v_self));
20988  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
20989  __Pyx_GOTREF(__pyx_v_info->obj);
20990  __Pyx_DECREF(__pyx_v_info->obj);
20991  __pyx_v_info->obj = ((PyObject *)__pyx_v_self);
20992  }
20993  __pyx_L14:;
20994 
20995  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":255
20996  * info.obj = self
20997  *
20998  * if not hasfields: # <<<<<<<<<<<<<<
20999  * t = descr.type_num
21000  * if ((descr.byteorder == c'>' and little_endian) or
21001  */
21002  __pyx_t_1 = ((!(__pyx_v_hasfields != 0)) != 0);
21003  if (__pyx_t_1) {
21004 
21005  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":256
21006  *
21007  * if not hasfields:
21008  * t = descr.type_num # <<<<<<<<<<<<<<
21009  * if ((descr.byteorder == c'>' and little_endian) or
21010  * (descr.byteorder == c'<' and not little_endian)):
21011  */
21012  __pyx_t_4 = __pyx_v_descr->type_num;
21013  __pyx_v_t = __pyx_t_4;
21014 
21015  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":257
21016  * if not hasfields:
21017  * t = descr.type_num
21018  * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
21019  * (descr.byteorder == c'<' and not little_endian)):
21020  * raise ValueError(u"Non-native byte order not supported")
21021  */
21022  __pyx_t_2 = ((__pyx_v_descr->byteorder == '>') != 0);
21023  if (!__pyx_t_2) {
21024  goto __pyx_L20_next_or;
21025  } else {
21026  }
21027  __pyx_t_2 = (__pyx_v_little_endian != 0);
21028  if (!__pyx_t_2) {
21029  } else {
21030  __pyx_t_1 = __pyx_t_2;
21031  goto __pyx_L19_bool_binop_done;
21032  }
21033  __pyx_L20_next_or:;
21034 
21035  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":258
21036  * t = descr.type_num
21037  * if ((descr.byteorder == c'>' and little_endian) or
21038  * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<<
21039  * raise ValueError(u"Non-native byte order not supported")
21040  * if t == NPY_BYTE: f = "b"
21041  */
21042  __pyx_t_2 = ((__pyx_v_descr->byteorder == '<') != 0);
21043  if (__pyx_t_2) {
21044  } else {
21045  __pyx_t_1 = __pyx_t_2;
21046  goto __pyx_L19_bool_binop_done;
21047  }
21048  __pyx_t_2 = ((!(__pyx_v_little_endian != 0)) != 0);
21049  __pyx_t_1 = __pyx_t_2;
21050  __pyx_L19_bool_binop_done:;
21051 
21052  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":257
21053  * if not hasfields:
21054  * t = descr.type_num
21055  * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
21056  * (descr.byteorder == c'<' and not little_endian)):
21057  * raise ValueError(u"Non-native byte order not supported")
21058  */
21059  if (__pyx_t_1) {
21060 
21061  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":259
21062  * if ((descr.byteorder == c'>' and little_endian) or
21063  * (descr.byteorder == c'<' and not little_endian)):
21064  * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<<
21065  * if t == NPY_BYTE: f = "b"
21066  * elif t == NPY_UBYTE: f = "B"
21067  */
21068  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__11, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 259, __pyx_L1_error)
21069  __Pyx_GOTREF(__pyx_t_3);
21070  __Pyx_Raise(__pyx_t_3, 0, 0, 0);
21071  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
21072  __PYX_ERR(1, 259, __pyx_L1_error)
21073 
21074  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":257
21075  * if not hasfields:
21076  * t = descr.type_num
21077  * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
21078  * (descr.byteorder == c'<' and not little_endian)):
21079  * raise ValueError(u"Non-native byte order not supported")
21080  */
21081  }
21082 
21083  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":260
21084  * (descr.byteorder == c'<' and not little_endian)):
21085  * raise ValueError(u"Non-native byte order not supported")
21086  * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<<
21087  * elif t == NPY_UBYTE: f = "B"
21088  * elif t == NPY_SHORT: f = "h"
21089  */
21090  switch (__pyx_v_t) {
21091  case NPY_BYTE:
21092  __pyx_v_f = ((char *)"b");
21093  break;
21094 
21095  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":261
21096  * raise ValueError(u"Non-native byte order not supported")
21097  * if t == NPY_BYTE: f = "b"
21098  * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<<
21099  * elif t == NPY_SHORT: f = "h"
21100  * elif t == NPY_USHORT: f = "H"
21101  */
21102  case NPY_UBYTE:
21103  __pyx_v_f = ((char *)"B");
21104  break;
21105 
21106  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":262
21107  * if t == NPY_BYTE: f = "b"
21108  * elif t == NPY_UBYTE: f = "B"
21109  * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<<
21110  * elif t == NPY_USHORT: f = "H"
21111  * elif t == NPY_INT: f = "i"
21112  */
21113  case NPY_SHORT:
21114  __pyx_v_f = ((char *)"h");
21115  break;
21116 
21117  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":263
21118  * elif t == NPY_UBYTE: f = "B"
21119  * elif t == NPY_SHORT: f = "h"
21120  * elif t == NPY_USHORT: f = "H" # <<<<<<<<<<<<<<
21121  * elif t == NPY_INT: f = "i"
21122  * elif t == NPY_UINT: f = "I"
21123  */
21124  case NPY_USHORT:
21125  __pyx_v_f = ((char *)"H");
21126  break;
21127 
21128  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":264
21129  * elif t == NPY_SHORT: f = "h"
21130  * elif t == NPY_USHORT: f = "H"
21131  * elif t == NPY_INT: f = "i" # <<<<<<<<<<<<<<
21132  * elif t == NPY_UINT: f = "I"
21133  * elif t == NPY_LONG: f = "l"
21134  */
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21136  __pyx_v_f = ((char *)"i");
21137  break;
21138 
21139  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":265
21140  * elif t == NPY_USHORT: f = "H"
21141  * elif t == NPY_INT: f = "i"
21142  * elif t == NPY_UINT: f = "I" # <<<<<<<<<<<<<<
21143  * elif t == NPY_LONG: f = "l"
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21145  */
21146  case NPY_UINT:
21147  __pyx_v_f = ((char *)"I");
21148  break;
21149 
21150  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":266
21151  * elif t == NPY_INT: f = "i"
21152  * elif t == NPY_UINT: f = "I"
21153  * elif t == NPY_LONG: f = "l" # <<<<<<<<<<<<<<
21154  * elif t == NPY_ULONG: f = "L"
21155  * elif t == NPY_LONGLONG: f = "q"
21156  */
21157  case NPY_LONG:
21158  __pyx_v_f = ((char *)"l");
21159  break;
21160 
21161  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":267
21162  * elif t == NPY_UINT: f = "I"
21163  * elif t == NPY_LONG: f = "l"
21164  * elif t == NPY_ULONG: f = "L" # <<<<<<<<<<<<<<
21165  * elif t == NPY_LONGLONG: f = "q"
21166  * elif t == NPY_ULONGLONG: f = "Q"
21167  */
21168  case NPY_ULONG:
21169  __pyx_v_f = ((char *)"L");
21170  break;
21171 
21172  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":268
21173  * elif t == NPY_LONG: f = "l"
21174  * elif t == NPY_ULONG: f = "L"
21175  * elif t == NPY_LONGLONG: f = "q" # <<<<<<<<<<<<<<
21176  * elif t == NPY_ULONGLONG: f = "Q"
21177  * elif t == NPY_FLOAT: f = "f"
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21179  case NPY_LONGLONG:
21180  __pyx_v_f = ((char *)"q");
21181  break;
21182 
21183  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":269
21184  * elif t == NPY_ULONG: f = "L"
21185  * elif t == NPY_LONGLONG: f = "q"
21186  * elif t == NPY_ULONGLONG: f = "Q" # <<<<<<<<<<<<<<
21187  * elif t == NPY_FLOAT: f = "f"
21188  * elif t == NPY_DOUBLE: f = "d"
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21190  case NPY_ULONGLONG:
21191  __pyx_v_f = ((char *)"Q");
21192  break;
21193 
21194  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":270
21195  * elif t == NPY_LONGLONG: f = "q"
21196  * elif t == NPY_ULONGLONG: f = "Q"
21197  * elif t == NPY_FLOAT: f = "f" # <<<<<<<<<<<<<<
21198  * elif t == NPY_DOUBLE: f = "d"
21199  * elif t == NPY_LONGDOUBLE: f = "g"
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21201  case NPY_FLOAT:
21202  __pyx_v_f = ((char *)"f");
21203  break;
21204 
21205  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":271
21206  * elif t == NPY_ULONGLONG: f = "Q"
21207  * elif t == NPY_FLOAT: f = "f"
21208  * elif t == NPY_DOUBLE: f = "d" # <<<<<<<<<<<<<<
21209  * elif t == NPY_LONGDOUBLE: f = "g"
21210  * elif t == NPY_CFLOAT: f = "Zf"
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21212  case NPY_DOUBLE:
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21214  break;
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21216  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":272
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21218  * elif t == NPY_DOUBLE: f = "d"
21219  * elif t == NPY_LONGDOUBLE: f = "g" # <<<<<<<<<<<<<<
21220  * elif t == NPY_CFLOAT: f = "Zf"
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21224  __pyx_v_f = ((char *)"g");
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21227  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":273
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21229  * elif t == NPY_LONGDOUBLE: f = "g"
21230  * elif t == NPY_CFLOAT: f = "Zf" # <<<<<<<<<<<<<<
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21232  * elif t == NPY_CLONGDOUBLE: f = "Zg"
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21235  __pyx_v_f = ((char *)"Zf");
21236  break;
21237 
21238  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":274
21239  * elif t == NPY_LONGDOUBLE: f = "g"
21240  * elif t == NPY_CFLOAT: f = "Zf"
21241  * elif t == NPY_CDOUBLE: f = "Zd" # <<<<<<<<<<<<<<
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21246  __pyx_v_f = ((char *)"Zd");
21247  break;
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21249  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":275
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21251  * elif t == NPY_CDOUBLE: f = "Zd"
21252  * elif t == NPY_CLONGDOUBLE: f = "Zg" # <<<<<<<<<<<<<<
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21258  break;
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21260  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":276
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21262  * elif t == NPY_CLONGDOUBLE: f = "Zg"
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21774  * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) # <<<<<<<<<<<<<<
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21927  } else {
21928  __pyx_t_6 = __pyx_t_7;
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21937  *
21938  * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
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21945  * if ((child.byteorder == c'>' and little_endian) or
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21952  __Pyx_GOTREF(__pyx_t_3);
21953  __Pyx_Raise(__pyx_t_3, 0, 0, 0);
21954  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
21955  __PYX_ERR(1, 803, __pyx_L1_error)
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21957  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":801
21958  * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd")
21959  *
21960  * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
21961  * (child.byteorder == c'<' and not little_endian)):
21962  * raise ValueError(u"Non-native byte order not supported")
21963  */
21964  }
21965 
21966  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":813
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21969  * while offset[0] < new_offset: # <<<<<<<<<<<<<<
21970  * f[0] = 120 # "x"; pad byte
21971  * f += 1
21972  */
21973  while (1) {
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21979  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
21980  if (!__pyx_t_6) break;
21981 
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21984  * while offset[0] < new_offset:
21985  * f[0] = 120 # "x"; pad byte # <<<<<<<<<<<<<<
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21987  * offset[0] += 1
21988  */
21989  (__pyx_v_f[0]) = 0x78;
21990 
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21992  * while offset[0] < new_offset:
21993  * f[0] = 120 # "x"; pad byte
21994  * f += 1 # <<<<<<<<<<<<<<
21995  * offset[0] += 1
21996  *
21997  */
21998  __pyx_v_f = (__pyx_v_f + 1);
21999 
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22002  * f += 1
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22004  *
22005  * offset[0] += child.itemsize
22006  */
22007  __pyx_t_8 = 0;
22008  (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + 1);
22009  }
22010 
22011  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":818
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22013  *
22014  * offset[0] += child.itemsize # <<<<<<<<<<<<<<
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22016  * if not PyDataType_HASFIELDS(child):
22017  */
22018  __pyx_t_8 = 0;
22019  (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize);
22020 
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22022  * offset[0] += child.itemsize
22023  *
22024  * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<<
22025  * t = child.type_num
22026  * if end - f < 5:
22027  */
22028  __pyx_t_6 = ((!(PyDataType_HASFIELDS(__pyx_v_child) != 0)) != 0);
22029  if (__pyx_t_6) {
22030 
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22034  * t = child.type_num # <<<<<<<<<<<<<<
22035  * if end - f < 5:
22036  * raise RuntimeError(u"Format string allocated too short.")
22037  */
22038  __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_child->type_num); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 821, __pyx_L1_error)
22039  __Pyx_GOTREF(__pyx_t_4);
22040  __Pyx_XDECREF_SET(__pyx_v_t, __pyx_t_4);
22041  __pyx_t_4 = 0;
22042 
22043  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":822
22044  * if not PyDataType_HASFIELDS(child):
22045  * t = child.type_num
22046  * if end - f < 5: # <<<<<<<<<<<<<<
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22048  *
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22050  __pyx_t_6 = (((__pyx_v_end - __pyx_v_f) < 5) != 0);
22051  if (__pyx_t_6) {
22052 
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22054  * t = child.type_num
22055  * if end - f < 5:
22056  * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<<
22057  *
22058  * # Until ticket #99 is fixed, use integers to avoid warnings
22059  */
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22062  __Pyx_Raise(__pyx_t_4, 0, 0, 0);
22063  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
22064  __PYX_ERR(1, 823, __pyx_L1_error)
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22069  * if end - f < 5: # <<<<<<<<<<<<<<
22070  * raise RuntimeError(u"Format string allocated too short.")
22071  *
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22073  }
22074 
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22080  * elif t == NPY_SHORT: f[0] = 104 #"h"
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22082  __pyx_t_4 = __Pyx_PyInt_From_enum__NPY_TYPES(NPY_BYTE); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 826, __pyx_L1_error)
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22084  __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 826, __pyx_L1_error)
22085  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
22086  __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 826, __pyx_L1_error)
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22088  if (__pyx_t_6) {
22089  (__pyx_v_f[0]) = 98;
22090  goto __pyx_L15;
22091  }
22092 
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22094  * # Until ticket #99 is fixed, use integers to avoid warnings
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22096  * elif t == NPY_UBYTE: f[0] = 66 #"B" # <<<<<<<<<<<<<<
22097  * elif t == NPY_SHORT: f[0] = 104 #"h"
22098  * elif t == NPY_USHORT: f[0] = 72 #"H"
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22100  __pyx_t_3 = __Pyx_PyInt_From_enum__NPY_TYPES(NPY_UBYTE); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 827, __pyx_L1_error)
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22102  __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 827, __pyx_L1_error)
22103  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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22107  (__pyx_v_f[0]) = 66;
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22113  * elif t == NPY_UBYTE: f[0] = 66 #"B"
22114  * elif t == NPY_SHORT: f[0] = 104 #"h" # <<<<<<<<<<<<<<
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22121  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
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22124  if (__pyx_t_6) {
22125  (__pyx_v_f[0]) = 0x68;
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22130  * elif t == NPY_UBYTE: f[0] = 66 #"B"
22131  * elif t == NPY_SHORT: f[0] = 104 #"h"
22132  * elif t == NPY_USHORT: f[0] = 72 #"H" # <<<<<<<<<<<<<<
22133  * elif t == NPY_INT: f[0] = 105 #"i"
22134  * elif t == NPY_UINT: f[0] = 73 #"I"
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22136  __pyx_t_3 = __Pyx_PyInt_From_enum__NPY_TYPES(NPY_USHORT); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 829, __pyx_L1_error)
22137  __Pyx_GOTREF(__pyx_t_3);
22138  __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 829, __pyx_L1_error)
22139  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
22140  __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 829, __pyx_L1_error)
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22142  if (__pyx_t_6) {
22143  (__pyx_v_f[0]) = 72;
22144  goto __pyx_L15;
22145  }
22146 
22147  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":830
22148  * elif t == NPY_SHORT: f[0] = 104 #"h"
22149  * elif t == NPY_USHORT: f[0] = 72 #"H"
22150  * elif t == NPY_INT: f[0] = 105 #"i" # <<<<<<<<<<<<<<
22151  * elif t == NPY_UINT: f[0] = 73 #"I"
22152  * elif t == NPY_LONG: f[0] = 108 #"l"
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22156  __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 830, __pyx_L1_error)
22157  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
22158  __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 830, __pyx_L1_error)
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22160  if (__pyx_t_6) {
22161  (__pyx_v_f[0]) = 0x69;
22162  goto __pyx_L15;
22163  }
22164 
22165  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":831
22166  * elif t == NPY_USHORT: f[0] = 72 #"H"
22167  * elif t == NPY_INT: f[0] = 105 #"i"
22168  * elif t == NPY_UINT: f[0] = 73 #"I" # <<<<<<<<<<<<<<
22169  * elif t == NPY_LONG: f[0] = 108 #"l"
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22175  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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22177  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
22178  if (__pyx_t_6) {
22179  (__pyx_v_f[0]) = 73;
22180  goto __pyx_L15;
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22182 
22183  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":832
22184  * elif t == NPY_INT: f[0] = 105 #"i"
22185  * elif t == NPY_UINT: f[0] = 73 #"I"
22186  * elif t == NPY_LONG: f[0] = 108 #"l" # <<<<<<<<<<<<<<
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22192  __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 832, __pyx_L1_error)
22193  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
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22197  (__pyx_v_f[0]) = 0x6C;
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22200 
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22202  * elif t == NPY_UINT: f[0] = 73 #"I"
22203  * elif t == NPY_LONG: f[0] = 108 #"l"
22204  * elif t == NPY_ULONG: f[0] = 76 #"L" # <<<<<<<<<<<<<<
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22206  * elif t == NPY_ULONGLONG: f[0] = 81 #"Q"
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22210  __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 833, __pyx_L1_error)
22211  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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22215  (__pyx_v_f[0]) = 76;
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22217  }
22218 
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22220  * elif t == NPY_LONG: f[0] = 108 #"l"
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22222  * elif t == NPY_LONGLONG: f[0] = 113 #"q" # <<<<<<<<<<<<<<
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22228  __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 834, __pyx_L1_error)
22229  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
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22247  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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22252  goto __pyx_L15;
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23084  {&__pyx_n_s_RE_NCP1_evaluateElementCoefficie_2, __pyx_k_RE_NCP1_evaluateElementCoefficie_2, sizeof(__pyx_k_RE_NCP1_evaluateElementCoefficie_2), 0, 0, 1, 1},
23085  {&__pyx_n_s_RE_NCP1_getElementJacobian, __pyx_k_RE_NCP1_getElementJacobian, sizeof(__pyx_k_RE_NCP1_getElementJacobian), 0, 0, 1, 1},
23086  {&__pyx_n_s_RE_NCP1_getElementResidual, __pyx_k_RE_NCP1_getElementResidual, sizeof(__pyx_k_RE_NCP1_getElementResidual), 0, 0, 1, 1},
23087  {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1},
23088  {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1},
23089  {&__pyx_n_s_a_avg, __pyx_k_a_avg, sizeof(__pyx_k_a_avg), 0, 0, 1, 1},
23090  {&__pyx_n_s_a_eN, __pyx_k_a_eN, sizeof(__pyx_k_a_eN), 0, 0, 1, 1},
23091  {&__pyx_n_s_a_neig, __pyx_k_a_neig, sizeof(__pyx_k_a_neig), 0, 0, 1, 1},
23092  {&__pyx_n_s_a_up, __pyx_k_a_up, sizeof(__pyx_k_a_up), 0, 0, 1, 1},
23093  {&__pyx_n_s_alpha, __pyx_k_alpha, sizeof(__pyx_k_alpha), 0, 0, 1, 1},
23094  {&__pyx_n_s_beta, __pyx_k_beta, sizeof(__pyx_k_beta), 0, 0, 1, 1},
23095  {&__pyx_n_s_calculateNormalFlux, __pyx_k_calculateNormalFlux, sizeof(__pyx_k_calculateNormalFlux), 0, 0, 1, 1},
23096  {&__pyx_n_s_characteristic_velocity, __pyx_k_characteristic_velocity, sizeof(__pyx_k_characteristic_velocity), 0, 0, 1, 1},
23097  {&__pyx_n_s_characteristic_velocity_dofs, __pyx_k_characteristic_velocity_dofs, sizeof(__pyx_k_characteristic_velocity_dofs), 0, 0, 1, 1},
23098  {&__pyx_n_s_clock, __pyx_k_clock, sizeof(__pyx_k_clock), 0, 0, 1, 1},
23099  {&__pyx_n_s_colind, __pyx_k_colind, sizeof(__pyx_k_colind), 0, 0, 1, 1},
23100  {&__pyx_n_s_computeSimpleCharacteristicVeloc, __pyx_k_computeSimpleCharacteristicVeloc, sizeof(__pyx_k_computeSimpleCharacteristicVeloc), 0, 0, 1, 1},
23101  {&__pyx_n_s_computeSimpleCharacteristicVeloc_2, __pyx_k_computeSimpleCharacteristicVeloc_2, sizeof(__pyx_k_computeSimpleCharacteristicVeloc_2), 0, 0, 1, 1},
23102  {&__pyx_n_s_d, __pyx_k_d, sizeof(__pyx_k_d), 0, 0, 1, 1},
23103  {&__pyx_n_s_dS, __pyx_k_dS, sizeof(__pyx_k_dS), 0, 0, 1, 1},
23104  {&__pyx_n_s_dV, __pyx_k_dV, sizeof(__pyx_k_dV), 0, 0, 1, 1},
23105  {&__pyx_n_s_denom, __pyx_k_denom, sizeof(__pyx_k_denom), 0, 0, 1, 1},
23106  {&__pyx_n_s_df, __pyx_k_df, sizeof(__pyx_k_df), 0, 0, 1, 1},
23107  {&__pyx_n_s_df_dofs, __pyx_k_df_dofs, sizeof(__pyx_k_df_dofs), 0, 0, 1, 1},
23108  {&__pyx_n_s_dkr_up, __pyx_k_dkr_up, sizeof(__pyx_k_dkr_up), 0, 0, 1, 1},
23109  {&__pyx_n_s_dm, __pyx_k_dm, sizeof(__pyx_k_dm), 0, 0, 1, 1},
23110  {&__pyx_n_s_dmt, __pyx_k_dmt, sizeof(__pyx_k_dmt), 0, 0, 1, 1},
23111  {&__pyx_n_s_dmtj_avg, __pyx_k_dmtj_avg, sizeof(__pyx_k_dmtj_avg), 0, 0, 1, 1},
23112  {&__pyx_n_s_dot, __pyx_k_dot, sizeof(__pyx_k_dot), 0, 0, 1, 1},
23113  {&__pyx_n_s_drhom, __pyx_k_drhom, sizeof(__pyx_k_drhom), 0, 0, 1, 1},
23114  {&__pyx_n_s_eN, __pyx_k_eN, sizeof(__pyx_k_eN), 0, 0, 1, 1},
23115  {&__pyx_n_s_eN_left, __pyx_k_eN_left, sizeof(__pyx_k_eN_left), 0, 0, 1, 1},
23116  {&__pyx_n_s_eN_neighbor, __pyx_k_eN_neighbor, sizeof(__pyx_k_eN_neighbor), 0, 0, 1, 1},
23117  {&__pyx_n_s_eN_right, __pyx_k_eN_right, sizeof(__pyx_k_eN_right), 0, 0, 1, 1},
23118  {&__pyx_n_s_ebN, __pyx_k_ebN, sizeof(__pyx_k_ebN), 0, 0, 1, 1},
23119  {&__pyx_n_s_ebNE, __pyx_k_ebNE, sizeof(__pyx_k_ebNE), 0, 0, 1, 1},
23120  {&__pyx_n_s_ebN_local, __pyx_k_ebN_local, sizeof(__pyx_k_ebN_local), 0, 0, 1, 1},
23121  {&__pyx_n_s_ebq_global_vals, __pyx_k_ebq_global_vals, sizeof(__pyx_k_ebq_global_vals), 0, 0, 1, 1},
23122  {&__pyx_n_s_ebq_vals, __pyx_k_ebq_vals, sizeof(__pyx_k_ebq_vals), 0, 0, 1, 1},
23123  {&__pyx_n_s_elementBarycentersArray, __pyx_k_elementBarycentersArray, sizeof(__pyx_k_elementBarycentersArray), 0, 0, 1, 1},
23124  {&__pyx_n_s_elementBoundariesArray, __pyx_k_elementBoundariesArray, sizeof(__pyx_k_elementBoundariesArray), 0, 0, 1, 1},
23125  {&__pyx_n_s_elementBoundaryElementsArray, __pyx_k_elementBoundaryElementsArray, sizeof(__pyx_k_elementBoundaryElementsArray), 0, 0, 1, 1},
23126  {&__pyx_n_s_elementBoundaryMaterialTypes, __pyx_k_elementBoundaryMaterialTypes, sizeof(__pyx_k_elementBoundaryMaterialTypes), 0, 0, 1, 1},
23127  {&__pyx_n_s_elementBoundaryTypes, __pyx_k_elementBoundaryTypes, sizeof(__pyx_k_elementBoundaryTypes), 0, 0, 1, 1},
23128  {&__pyx_n_s_elementJacobian, __pyx_k_elementJacobian, sizeof(__pyx_k_elementJacobian), 0, 0, 1, 1},
23129  {&__pyx_n_s_elementMaterialTypes, __pyx_k_elementMaterialTypes, sizeof(__pyx_k_elementMaterialTypes), 0, 0, 1, 1},
23130  {&__pyx_n_s_elementNeighborsArray, __pyx_k_elementNeighborsArray, sizeof(__pyx_k_elementNeighborsArray), 0, 0, 1, 1},
23131  {&__pyx_n_s_elementResidual, __pyx_k_elementResidual, sizeof(__pyx_k_elementResidual), 0, 0, 1, 1},
23132  {&__pyx_n_s_evaluateScalarMaterialFunctionOv, __pyx_k_evaluateScalarMaterialFunctionOv, sizeof(__pyx_k_evaluateScalarMaterialFunctionOv), 0, 0, 1, 1},
23133  {&__pyx_n_s_evaluateScalarMaterialFunctionOv_2, __pyx_k_evaluateScalarMaterialFunctionOv_2, sizeof(__pyx_k_evaluateScalarMaterialFunctionOv_2), 0, 0, 1, 1},
23134  {&__pyx_n_s_evaluateScalarMaterialFunctionOv_3, __pyx_k_evaluateScalarMaterialFunctionOv_3, sizeof(__pyx_k_evaluateScalarMaterialFunctionOv_3), 0, 0, 1, 1},
23135  {&__pyx_n_s_evaluateSparseTensorMaterialFunc, __pyx_k_evaluateSparseTensorMaterialFunc, sizeof(__pyx_k_evaluateSparseTensorMaterialFunc), 0, 0, 1, 1},
23136  {&__pyx_n_s_evaluateSparseTensorMaterialFunc_2, __pyx_k_evaluateSparseTensorMaterialFunc_2, sizeof(__pyx_k_evaluateSparseTensorMaterialFunc_2), 0, 0, 1, 1},
23137  {&__pyx_n_s_evaluateVectorMaterialFunctionOv, __pyx_k_evaluateVectorMaterialFunctionOv, sizeof(__pyx_k_evaluateVectorMaterialFunctionOv), 0, 0, 1, 1},
23138  {&__pyx_n_s_exteriorElementBoundariesArray, __pyx_k_exteriorElementBoundariesArray, sizeof(__pyx_k_exteriorElementBoundariesArray), 0, 0, 1, 1},
23139  {&__pyx_n_s_exteriorElementBoundaryMaterialT, __pyx_k_exteriorElementBoundaryMaterialT, sizeof(__pyx_k_exteriorElementBoundaryMaterialT), 0, 0, 1, 1},
23140  {&__pyx_n_s_f_up, __pyx_k_f_up, sizeof(__pyx_k_f_up), 0, 0, 1, 1},
23141  {&__pyx_n_s_flat, __pyx_k_flat, sizeof(__pyx_k_flat), 0, 0, 1, 1},
23142  {&__pyx_n_s_flux, __pyx_k_flux, sizeof(__pyx_k_flux), 0, 0, 1, 1},
23143  {&__pyx_n_s_gravity, __pyx_k_gravity, sizeof(__pyx_k_gravity), 0, 0, 1, 1},
23144  {&__pyx_n_s_helicalElementVelocityEval3, __pyx_k_helicalElementVelocityEval3, sizeof(__pyx_k_helicalElementVelocityEval3), 0, 0, 1, 1},
23145  {&__pyx_n_s_helicalElementVelocityEval4, __pyx_k_helicalElementVelocityEval4, sizeof(__pyx_k_helicalElementVelocityEval4), 0, 0, 1, 1},
23146  {&__pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_k_home_cekees_proteus_proteus_sub, sizeof(__pyx_k_home_cekees_proteus_proteus_sub), 0, 0, 1, 0},
23147  {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1},
23148  {&__pyx_n_s_ii, __pyx_k_ii, sizeof(__pyx_k_ii), 0, 0, 1, 1},
23149  {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1},
23150  {&__pyx_n_s_integral, __pyx_k_integral, sizeof(__pyx_k_integral), 0, 0, 1, 1},
23151  {&__pyx_n_s_j, __pyx_k_j, sizeof(__pyx_k_j), 0, 0, 1, 1},
23152  {&__pyx_n_s_jacobian_weak_residual, __pyx_k_jacobian_weak_residual, sizeof(__pyx_k_jacobian_weak_residual), 0, 0, 1, 1},
23153  {&__pyx_n_s_k, __pyx_k_k, sizeof(__pyx_k_k), 0, 0, 1, 1},
23154  {&__pyx_n_s_kb, __pyx_k_kb, sizeof(__pyx_k_kb), 0, 0, 1, 1},
23155  {&__pyx_n_s_kr_eN, __pyx_k_kr_eN, sizeof(__pyx_k_kr_eN), 0, 0, 1, 1},
23156  {&__pyx_n_s_kr_neig, __pyx_k_kr_neig, sizeof(__pyx_k_kr_neig), 0, 0, 1, 1},
23157  {&__pyx_n_s_l2g, __pyx_k_l2g, sizeof(__pyx_k_l2g), 0, 0, 1, 1},
23158  {&__pyx_n_s_m, __pyx_k_m, sizeof(__pyx_k_m), 0, 0, 1, 1},
23159  {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1},
23160  {&__pyx_n_s_matID, __pyx_k_matID, sizeof(__pyx_k_matID), 0, 0, 1, 1},
23161  {&__pyx_n_s_matID_neig, __pyx_k_matID_neig, sizeof(__pyx_k_matID_neig), 0, 0, 1, 1},
23162  {&__pyx_n_s_material, __pyx_k_material, sizeof(__pyx_k_material), 0, 0, 1, 1},
23163  {&__pyx_n_s_material_functions, __pyx_k_material_functions, sizeof(__pyx_k_material_functions), 0, 0, 1, 1},
23164  {&__pyx_n_s_material_left, __pyx_k_material_left, sizeof(__pyx_k_material_left), 0, 0, 1, 1},
23165  {&__pyx_n_s_material_right, __pyx_k_material_right, sizeof(__pyx_k_material_right), 0, 0, 1, 1},
23166  {&__pyx_n_s_mt, __pyx_k_mt, sizeof(__pyx_k_mt), 0, 0, 1, 1},
23167  {&__pyx_n_s_mt_avg, __pyx_k_mt_avg, sizeof(__pyx_k_mt_avg), 0, 0, 1, 1},
23168  {&__pyx_n_s_n, __pyx_k_n, sizeof(__pyx_k_n), 0, 0, 1, 1},
23169  {&__pyx_n_s_nAvgWeight, __pyx_k_nAvgWeight, sizeof(__pyx_k_nAvgWeight), 0, 0, 1, 1},
23170  {&__pyx_n_s_nDOF_test_element, __pyx_k_nDOF_test_element, sizeof(__pyx_k_nDOF_test_element), 0, 0, 1, 1},
23171  {&__pyx_n_s_nDOF_trial_element, __pyx_k_nDOF_trial_element, sizeof(__pyx_k_nDOF_trial_element), 0, 0, 1, 1},
23172  {&__pyx_n_s_nElementBoundaries_element, __pyx_k_nElementBoundaries_element, sizeof(__pyx_k_nElementBoundaries_element), 0, 0, 1, 1},
23173  {&__pyx_n_s_nElementBoundaries_global, __pyx_k_nElementBoundaries_global, sizeof(__pyx_k_nElementBoundaries_global), 0, 0, 1, 1},
23174  {&__pyx_n_s_nElements_global, __pyx_k_nElements_global, sizeof(__pyx_k_nElements_global), 0, 0, 1, 1},
23175  {&__pyx_n_s_nExteriorElementBoundaries_globa, __pyx_k_nExteriorElementBoundaries_globa, sizeof(__pyx_k_nExteriorElementBoundaries_globa), 0, 0, 1, 1},
23176  {&__pyx_n_s_nSpace, __pyx_k_nSpace, sizeof(__pyx_k_nSpace), 0, 0, 1, 1},
23177  {&__pyx_n_s_nSpace2, __pyx_k_nSpace2, sizeof(__pyx_k_nSpace2), 0, 0, 1, 1},
23178  {&__pyx_n_s_nd, __pyx_k_nd, sizeof(__pyx_k_nd), 0, 0, 1, 1},
23179  {&__pyx_kp_u_ndarray_is_not_C_contiguous, __pyx_k_ndarray_is_not_C_contiguous, sizeof(__pyx_k_ndarray_is_not_C_contiguous), 0, 1, 0, 0},
23180  {&__pyx_kp_u_ndarray_is_not_Fortran_contiguou, __pyx_k_ndarray_is_not_Fortran_contiguou, sizeof(__pyx_k_ndarray_is_not_Fortran_contiguou), 0, 1, 0, 0},
23181  {&__pyx_n_s_nnz, __pyx_k_nnz, sizeof(__pyx_k_nnz), 0, 0, 1, 1},
23182  {&__pyx_n_s_numer, __pyx_k_numer, sizeof(__pyx_k_numer), 0, 0, 1, 1},
23183  {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1},
23184  {&__pyx_kp_s_numpy_core_multiarray_failed_to, __pyx_k_numpy_core_multiarray_failed_to, sizeof(__pyx_k_numpy_core_multiarray_failed_to), 0, 0, 1, 0},
23185  {&__pyx_kp_s_numpy_core_umath_failed_to_impor, __pyx_k_numpy_core_umath_failed_to_impor, sizeof(__pyx_k_numpy_core_umath_failed_to_impor), 0, 0, 1, 0},
23186  {&__pyx_n_s_omega_e, __pyx_k_omega_e, sizeof(__pyx_k_omega_e), 0, 0, 1, 1},
23187  {&__pyx_n_s_one8, __pyx_k_one8, sizeof(__pyx_k_one8), 0, 0, 1, 1},
23188  {&__pyx_n_s_onePlus_pcBar_n, __pyx_k_onePlus_pcBar_n, sizeof(__pyx_k_onePlus_pcBar_n), 0, 0, 1, 1},
23189  {&__pyx_n_s_pcBar, __pyx_k_pcBar, sizeof(__pyx_k_pcBar), 0, 0, 1, 1},
23190  {&__pyx_n_s_pcBar_n, __pyx_k_pcBar_n, sizeof(__pyx_k_pcBar_n), 0, 0, 1, 1},
23191  {&__pyx_n_s_pcBar_nM1, __pyx_k_pcBar_nM1, sizeof(__pyx_k_pcBar_nM1), 0, 0, 1, 1},
23192  {&__pyx_n_s_pcBar_nM2, __pyx_k_pcBar_nM2, sizeof(__pyx_k_pcBar_nM2), 0, 0, 1, 1},
23193  {&__pyx_n_s_phi_eN, __pyx_k_phi_eN, sizeof(__pyx_k_phi_eN), 0, 0, 1, 1},
23194  {&__pyx_n_s_phi_neig, __pyx_k_phi_neig, sizeof(__pyx_k_phi_neig), 0, 0, 1, 1},
23195  {&__pyx_n_s_pi, __pyx_k_pi, sizeof(__pyx_k_pi), 0, 0, 1, 1},
23196  {&__pyx_n_s_picard, __pyx_k_picard, sizeof(__pyx_k_picard), 0, 0, 1, 1},
23197  {&__pyx_n_s_psiC, __pyx_k_psiC, sizeof(__pyx_k_psiC), 0, 0, 1, 1},
23198  {&__pyx_n_s_q, __pyx_k_q, sizeof(__pyx_k_q), 0, 0, 1, 1},
23199  {&__pyx_n_s_q_alin, __pyx_k_q_alin, sizeof(__pyx_k_q_alin), 0, 0, 1, 1},
23200  {&__pyx_n_s_q_detJ, __pyx_k_q_detJ, sizeof(__pyx_k_q_detJ), 0, 0, 1, 1},
23201  {&__pyx_n_s_q_dkr, __pyx_k_q_dkr, sizeof(__pyx_k_q_dkr), 0, 0, 1, 1},
23202  {&__pyx_n_s_q_dm, __pyx_k_q_dm, sizeof(__pyx_k_q_dm), 0, 0, 1, 1},
23203  {&__pyx_n_s_q_dmass, __pyx_k_q_dmass, sizeof(__pyx_k_q_dmass), 0, 0, 1, 1},
23204  {&__pyx_n_s_q_dmt, __pyx_k_q_dmt, sizeof(__pyx_k_q_dmt), 0, 0, 1, 1},
23205  {&__pyx_n_s_q_flin, __pyx_k_q_flin, sizeof(__pyx_k_q_flin), 0, 0, 1, 1},
23206  {&__pyx_n_s_q_grad_u, __pyx_k_q_grad_u, sizeof(__pyx_k_q_grad_u), 0, 0, 1, 1},
23207  {&__pyx_n_s_q_grad_v, __pyx_k_q_grad_v, sizeof(__pyx_k_q_grad_v), 0, 0, 1, 1},
23208  {&__pyx_n_s_q_grad_w, __pyx_k_q_grad_w, sizeof(__pyx_k_q_grad_w), 0, 0, 1, 1},
23209  {&__pyx_n_s_q_kr, __pyx_k_q_kr, sizeof(__pyx_k_q_kr), 0, 0, 1, 1},
23210  {&__pyx_n_s_q_kr_up, __pyx_k_q_kr_up, sizeof(__pyx_k_q_kr_up), 0, 0, 1, 1},
23211  {&__pyx_n_s_q_m, __pyx_k_q_m, sizeof(__pyx_k_q_m), 0, 0, 1, 1},
23212  {&__pyx_n_s_q_mass, __pyx_k_q_mass, sizeof(__pyx_k_q_mass), 0, 0, 1, 1},
23213  {&__pyx_n_s_q_mt, __pyx_k_q_mt, sizeof(__pyx_k_q_mt), 0, 0, 1, 1},
23214  {&__pyx_n_s_q_r, __pyx_k_q_r, sizeof(__pyx_k_q_r), 0, 0, 1, 1},
23215  {&__pyx_n_s_q_u, __pyx_k_q_u, sizeof(__pyx_k_q_u), 0, 0, 1, 1},
23216  {&__pyx_n_s_q_vals, __pyx_k_q_vals, sizeof(__pyx_k_q_vals), 0, 0, 1, 1},
23217  {&__pyx_n_s_q_x, __pyx_k_q_x, sizeof(__pyx_k_q_x), 0, 0, 1, 1},
23218  {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1},
23219  {&__pyx_n_s_rho, __pyx_k_rho, sizeof(__pyx_k_rho), 0, 0, 1, 1},
23220  {&__pyx_n_s_rho2, __pyx_k_rho2, sizeof(__pyx_k_rho2), 0, 0, 1, 1},
23221  {&__pyx_n_s_rhom, __pyx_k_rhom, sizeof(__pyx_k_rhom), 0, 0, 1, 1},
23222  {&__pyx_n_s_rotatingGaussianElementVelocityE, __pyx_k_rotatingGaussianElementVelocityE, sizeof(__pyx_k_rotatingGaussianElementVelocityE), 0, 0, 1, 1},
23223  {&__pyx_n_s_rotatingGaussianElementVelocityE_2, __pyx_k_rotatingGaussianElementVelocityE_2, sizeof(__pyx_k_rotatingGaussianElementVelocityE_2), 0, 0, 1, 1},
23224  {&__pyx_n_s_rowptr, __pyx_k_rowptr, sizeof(__pyx_k_rowptr), 0, 0, 1, 1},
23225  {&__pyx_n_s_sBar, __pyx_k_sBar, sizeof(__pyx_k_sBar), 0, 0, 1, 1},
23226  {&__pyx_n_s_setElementBoundariesArray, __pyx_k_setElementBoundariesArray, sizeof(__pyx_k_setElementBoundariesArray), 0, 0, 1, 1},
23227  {&__pyx_n_s_setExteriorElementBoundaryTypes, __pyx_k_setExteriorElementBoundaryTypes, sizeof(__pyx_k_setExteriorElementBoundaryTypes), 0, 0, 1, 1},
23228  {&__pyx_n_s_setScalarMaterialFunctionOverEle, __pyx_k_setScalarMaterialFunctionOverEle, sizeof(__pyx_k_setScalarMaterialFunctionOverEle), 0, 0, 1, 1},
23229  {&__pyx_n_s_setScalarMaterialFunctionOverEle_2, __pyx_k_setScalarMaterialFunctionOverEle_2, sizeof(__pyx_k_setScalarMaterialFunctionOverEle_2), 0, 0, 1, 1},
23230  {&__pyx_n_s_setScalarMaterialFunctionOverGlo, __pyx_k_setScalarMaterialFunctionOverGlo, sizeof(__pyx_k_setScalarMaterialFunctionOverGlo), 0, 0, 1, 1},
23231  {&__pyx_n_s_setSparseTensorMaterialFunctionO, __pyx_k_setSparseTensorMaterialFunctionO, sizeof(__pyx_k_setSparseTensorMaterialFunctionO), 0, 0, 1, 1},
23232  {&__pyx_n_s_setSparseTensorMaterialFunctionO_2, __pyx_k_setSparseTensorMaterialFunctionO_2, sizeof(__pyx_k_setSparseTensorMaterialFunctionO_2), 0, 0, 1, 1},
23233  {&__pyx_n_s_setVectorMaterialFunctionOverEle, __pyx_k_setVectorMaterialFunctionOverEle, sizeof(__pyx_k_setVectorMaterialFunctionOverEle), 0, 0, 1, 1},
23234  {&__pyx_n_s_shape, __pyx_k_shape, sizeof(__pyx_k_shape), 0, 0, 1, 1},
23235  {&__pyx_n_s_sqrt_sBar, __pyx_k_sqrt_sBar, sizeof(__pyx_k_sqrt_sBar), 0, 0, 1, 1},
23236  {&__pyx_n_s_subsurfaceTransportFunctions, __pyx_k_subsurfaceTransportFunctions, sizeof(__pyx_k_subsurfaceTransportFunctions), 0, 0, 1, 1},
23237  {&__pyx_n_s_sum, __pyx_k_sum, sizeof(__pyx_k_sum), 0, 0, 1, 1},
23238  {&__pyx_n_s_t, __pyx_k_t, sizeof(__pyx_k_t), 0, 0, 1, 1},
23239  {&__pyx_n_s_tForReversal, __pyx_k_tForReversal, sizeof(__pyx_k_tForReversal), 0, 0, 1, 1},
23240  {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1},
23241  {&__pyx_n_s_thetaR, __pyx_k_thetaR, sizeof(__pyx_k_thetaR), 0, 0, 1, 1},
23242  {&__pyx_n_s_thetaS, __pyx_k_thetaS, sizeof(__pyx_k_thetaS), 0, 0, 1, 1},
23243  {&__pyx_n_s_thetaSR, __pyx_k_thetaSR, sizeof(__pyx_k_thetaSR), 0, 0, 1, 1},
23244  {&__pyx_n_s_thetaW, __pyx_k_thetaW, sizeof(__pyx_k_thetaW), 0, 0, 1, 1},
23245  {&__pyx_n_s_thisElementIsUpwind, __pyx_k_thisElementIsUpwind, sizeof(__pyx_k_thisElementIsUpwind), 0, 0, 1, 1},
23246  {&__pyx_n_s_transient, __pyx_k_transient, sizeof(__pyx_k_transient), 0, 0, 1, 1},
23247  {&__pyx_n_s_u_dof, __pyx_k_u_dof, sizeof(__pyx_k_u_dof), 0, 0, 1, 1},
23248  {&__pyx_n_s_u_eN, __pyx_k_u_eN, sizeof(__pyx_k_u_eN), 0, 0, 1, 1},
23249  {&__pyx_n_s_u_j, __pyx_k_u_j, sizeof(__pyx_k_u_j), 0, 0, 1, 1},
23250  {&__pyx_n_s_u_l2g, __pyx_k_u_l2g, sizeof(__pyx_k_u_l2g), 0, 0, 1, 1},
23251  {&__pyx_n_s_u_neig, __pyx_k_u_neig, sizeof(__pyx_k_u_neig), 0, 0, 1, 1},
23252  {&__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_k_unknown_dtype_code_in_numpy_pxd, sizeof(__pyx_k_unknown_dtype_code_in_numpy_pxd), 0, 1, 0, 0},
23253  {&__pyx_n_s_updateMassJacobian_weakAvg, __pyx_k_updateMassJacobian_weakAvg, sizeof(__pyx_k_updateMassJacobian_weakAvg), 0, 0, 1, 1},
23254  {&__pyx_n_s_updateMass_weakAvg, __pyx_k_updateMass_weakAvg, sizeof(__pyx_k_updateMass_weakAvg), 0, 0, 1, 1},
23255  {&__pyx_n_s_upwindFlag, __pyx_k_upwindFlag, sizeof(__pyx_k_upwindFlag), 0, 0, 1, 1},
23256  {&__pyx_n_s_v, __pyx_k_v, sizeof(__pyx_k_v), 0, 0, 1, 1},
23257  {&__pyx_n_s_vBar, __pyx_k_vBar, sizeof(__pyx_k_vBar), 0, 0, 1, 1},
23258  {&__pyx_n_s_vBar2, __pyx_k_vBar2, sizeof(__pyx_k_vBar2), 0, 0, 1, 1},
23259  {&__pyx_n_s_vol, __pyx_k_vol, sizeof(__pyx_k_vol), 0, 0, 1, 1},
23260  {&__pyx_n_s_volFactor, __pyx_k_volFactor, sizeof(__pyx_k_volFactor), 0, 0, 1, 1},
23261  {&__pyx_n_s_vol_e, __pyx_k_vol_e, sizeof(__pyx_k_vol_e), 0, 0, 1, 1},
23262  {&__pyx_n_s_volume, __pyx_k_volume, sizeof(__pyx_k_volume), 0, 0, 1, 1},
23263  {&__pyx_n_s_vortexElementVelocityEval3, __pyx_k_vortexElementVelocityEval3, sizeof(__pyx_k_vortexElementVelocityEval3), 0, 0, 1, 1},
23264  {&__pyx_n_s_vortexElementVelocityEval4, __pyx_k_vortexElementVelocityEval4, sizeof(__pyx_k_vortexElementVelocityEval4), 0, 0, 1, 1},
23265  {&__pyx_n_s_w, __pyx_k_w, sizeof(__pyx_k_w), 0, 0, 1, 1},
23266  {&__pyx_n_s_weak_residual, __pyx_k_weak_residual, sizeof(__pyx_k_weak_residual), 0, 0, 1, 1},
23267  {&__pyx_n_s_weight, __pyx_k_weight, sizeof(__pyx_k_weight), 0, 0, 1, 1},
23268  {&__pyx_n_s_x, __pyx_k_x, sizeof(__pyx_k_x), 0, 0, 1, 1},
23269  {&__pyx_n_s_xc, __pyx_k_xc, sizeof(__pyx_k_xc), 0, 0, 1, 1},
23270  {&__pyx_n_s_yc, __pyx_k_yc, sizeof(__pyx_k_yc), 0, 0, 1, 1},
23271  {&__pyx_n_s_zVelocity, __pyx_k_zVelocity, sizeof(__pyx_k_zVelocity), 0, 0, 1, 1},
23272  {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1},
23273  {&__pyx_n_s_zvelocity, __pyx_k_zvelocity, sizeof(__pyx_k_zvelocity), 0, 0, 1, 1},
23274  {0, 0, 0, 0, 0, 0, 0}
23275 };
23276 static int __Pyx_InitCachedBuiltins(void) {
23277  __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) __PYX_ERR(0, 24, __pyx_L1_error)
23278  __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(1, 218, __pyx_L1_error)
23279  __pyx_builtin_RuntimeError = __Pyx_GetBuiltinName(__pyx_n_s_RuntimeError); if (!__pyx_builtin_RuntimeError) __PYX_ERR(1, 799, __pyx_L1_error)
23280  __pyx_builtin_ImportError = __Pyx_GetBuiltinName(__pyx_n_s_ImportError); if (!__pyx_builtin_ImportError) __PYX_ERR(1, 989, __pyx_L1_error)
23281  return 0;
23282  __pyx_L1_error:;
23283  return -1;
23284 }
23285 
23286 static int __Pyx_InitCachedConstants(void) {
23287  __Pyx_RefNannyDeclarations
23288  __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);
23289 
23290  /* "subsurfaceTransportFunctions.pyx":66
23291  * material = elementMaterialTypes[eN]
23292  * for k in range(q_vals.shape[1]):
23293  * q_vals[eN,k,:] = material_functions[material].flat # <<<<<<<<<<<<<<
23294  *
23295  *
23296  */
23297  __pyx_slice_ = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice_)) __PYX_ERR(0, 66, __pyx_L1_error)
23298  __Pyx_GOTREF(__pyx_slice_);
23299  __Pyx_GIVEREF(__pyx_slice_);
23300 
23301  /* "subsurfaceTransportFunctions.pyx":192
23302  * material = elementMaterialTypes[eN]
23303  * for k in range(x.shape[1]):
23304  * q_vals[eN,k,:] = material_functions[material](x[eN,k],t).flat # <<<<<<<<<<<<<<
23305  *
23306  *
23307  */
23308  __pyx_slice__2 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__2)) __PYX_ERR(0, 192, __pyx_L1_error)
23309  __Pyx_GOTREF(__pyx_slice__2);
23310  __Pyx_GIVEREF(__pyx_slice__2);
23311 
23312  /* "subsurfaceTransportFunctions.pyx":794
23313  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
23314  * v[eN,k,2]=zvelocity
23315  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock # <<<<<<<<<<<<<<
23316  * else:
23317  * for eN in range(x.shape[0]):
23318  */
23319  __pyx_slice__3 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__3)) __PYX_ERR(0, 794, __pyx_L1_error)
23320  __Pyx_GOTREF(__pyx_slice__3);
23321  __Pyx_GIVEREF(__pyx_slice__3);
23322 
23323  /* "subsurfaceTransportFunctions.pyx":808
23324  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
23325  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
23326  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock # <<<<<<<<<<<<<<
23327  * else:
23328  * for eN in range(x.shape[0]):
23329  */
23330  __pyx_slice__4 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__4)) __PYX_ERR(0, 808, __pyx_L1_error)
23331  __Pyx_GOTREF(__pyx_slice__4);
23332  __Pyx_GIVEREF(__pyx_slice__4);
23333 
23334  /* "subsurfaceTransportFunctions.pyx":835
23335  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
23336  * v[eN,ebN,k,2]=zvelocity
23337  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock # <<<<<<<<<<<<<<
23338  * else:
23339  * for eN in range(x.shape[0]):
23340  */
23341  __pyx_slice__5 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__5)) __PYX_ERR(0, 835, __pyx_L1_error)
23342  __Pyx_GOTREF(__pyx_slice__5);
23343  __Pyx_GIVEREF(__pyx_slice__5);
23344 
23345  /* "subsurfaceTransportFunctions.pyx":851
23346  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
23347  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
23348  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock # <<<<<<<<<<<<<<
23349  * else:
23350  * for eN in range(x.shape[0]):
23351  */
23352  __pyx_slice__6 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__6)) __PYX_ERR(0, 851, __pyx_L1_error)
23353  __Pyx_GOTREF(__pyx_slice__6);
23354  __Pyx_GIVEREF(__pyx_slice__6);
23355 
23356  /* "subsurfaceTransportFunctions.pyx":876
23357  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
23358  * v[eN,k,2]=zVelocity
23359  * v[eN,k,:]*=clock*cos(pi*t/(tForReversal*2.0)) # <<<<<<<<<<<<<<
23360  * else:
23361  * for eN in range(x.shape[0]):
23362  */
23363  __pyx_slice__7 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__7)) __PYX_ERR(0, 876, __pyx_L1_error)
23364  __Pyx_GOTREF(__pyx_slice__7);
23365  __Pyx_GIVEREF(__pyx_slice__7);
23366 
23367  /* "subsurfaceTransportFunctions.pyx":902
23368  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
23369  * v[eN,ebN,k,2]=zVelocity
23370  * v[eN,ebN,k,:]*=clock*cos(pi*t/(tForReversal*2.0)) # <<<<<<<<<<<<<<
23371  * else:
23372  * for eN in range(x.shape[0]):
23373  */
23374  __pyx_slice__8 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__8)) __PYX_ERR(0, 902, __pyx_L1_error)
23375  __Pyx_GOTREF(__pyx_slice__8);
23376  __Pyx_GIVEREF(__pyx_slice__8);
23377 
23378  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":218
23379  * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS)
23380  * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)):
23381  * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<<
23382  *
23383  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
23384  */
23385  __pyx_tuple__9 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_C_contiguous); if (unlikely(!__pyx_tuple__9)) __PYX_ERR(1, 218, __pyx_L1_error)
23386  __Pyx_GOTREF(__pyx_tuple__9);
23387  __Pyx_GIVEREF(__pyx_tuple__9);
23388 
23389  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":222
23390  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
23391  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)):
23392  * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<<
23393  *
23394  * info.buf = PyArray_DATA(self)
23395  */
23396  __pyx_tuple__10 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_Fortran_contiguou); if (unlikely(!__pyx_tuple__10)) __PYX_ERR(1, 222, __pyx_L1_error)
23397  __Pyx_GOTREF(__pyx_tuple__10);
23398  __Pyx_GIVEREF(__pyx_tuple__10);
23399 
23400  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":259
23401  * if ((descr.byteorder == c'>' and little_endian) or
23402  * (descr.byteorder == c'<' and not little_endian)):
23403  * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<<
23404  * if t == NPY_BYTE: f = "b"
23405  * elif t == NPY_UBYTE: f = "B"
23406  */
23407  __pyx_tuple__11 = PyTuple_Pack(1, __pyx_kp_u_Non_native_byte_order_not_suppor); if (unlikely(!__pyx_tuple__11)) __PYX_ERR(1, 259, __pyx_L1_error)
23408  __Pyx_GOTREF(__pyx_tuple__11);
23409  __Pyx_GIVEREF(__pyx_tuple__11);
23410 
23411  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":799
23412  *
23413  * if (end - f) - <int>(new_offset - offset[0]) < 15:
23414  * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<<
23415  *
23416  * if ((child.byteorder == c'>' and little_endian) or
23417  */
23418  __pyx_tuple__12 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor); if (unlikely(!__pyx_tuple__12)) __PYX_ERR(1, 799, __pyx_L1_error)
23419  __Pyx_GOTREF(__pyx_tuple__12);
23420  __Pyx_GIVEREF(__pyx_tuple__12);
23421 
23422  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":803
23423  * if ((child.byteorder == c'>' and little_endian) or
23424  * (child.byteorder == c'<' and not little_endian)):
23425  * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<<
23426  * # One could encode it in the format string and have Cython
23427  * # complain instead, BUT: < and > in format strings also imply
23428  */
23429  __pyx_tuple__13 = PyTuple_Pack(1, __pyx_kp_u_Non_native_byte_order_not_suppor); if (unlikely(!__pyx_tuple__13)) __PYX_ERR(1, 803, __pyx_L1_error)
23430  __Pyx_GOTREF(__pyx_tuple__13);
23431  __Pyx_GIVEREF(__pyx_tuple__13);
23432 
23433  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":823
23434  * t = child.type_num
23435  * if end - f < 5:
23436  * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<<
23437  *
23438  * # Until ticket #99 is fixed, use integers to avoid warnings
23439  */
23440  __pyx_tuple__14 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor_2); if (unlikely(!__pyx_tuple__14)) __PYX_ERR(1, 823, __pyx_L1_error)
23441  __Pyx_GOTREF(__pyx_tuple__14);
23442  __Pyx_GIVEREF(__pyx_tuple__14);
23443 
23444  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":989
23445  * _import_array()
23446  * except Exception:
23447  * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
23448  *
23449  * cdef inline int import_umath() except -1:
23450  */
23451  __pyx_tuple__15 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_multiarray_failed_to); if (unlikely(!__pyx_tuple__15)) __PYX_ERR(1, 989, __pyx_L1_error)
23452  __Pyx_GOTREF(__pyx_tuple__15);
23453  __Pyx_GIVEREF(__pyx_tuple__15);
23454 
23455  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":995
23456  * _import_umath()
23457  * except Exception:
23458  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
23459  *
23460  * cdef inline int import_ufunc() except -1:
23461  */
23462  __pyx_tuple__16 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_umath_failed_to_impor); if (unlikely(!__pyx_tuple__16)) __PYX_ERR(1, 995, __pyx_L1_error)
23463  __Pyx_GOTREF(__pyx_tuple__16);
23464  __Pyx_GIVEREF(__pyx_tuple__16);
23465 
23466  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":1001
23467  * _import_umath()
23468  * except Exception:
23469  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
23470  */
23471  __pyx_tuple__17 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_umath_failed_to_impor); if (unlikely(!__pyx_tuple__17)) __PYX_ERR(1, 1001, __pyx_L1_error)
23472  __Pyx_GOTREF(__pyx_tuple__17);
23473  __Pyx_GIVEREF(__pyx_tuple__17);
23474 
23475  /* "subsurfaceTransportFunctions.pyx":18
23476  * ctypedef int ITYPE_t
23477  *
23478  * def setExteriorElementBoundaryTypes(int nExteriorElementBoundaries_global, # <<<<<<<<<<<<<<
23479  * numpy.ndarray[ITYPE_t,ndim=1] exteriorElementBoundariesArray,
23480  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
23481  */
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23483  __Pyx_GOTREF(__pyx_tuple__18);
23484  __Pyx_GIVEREF(__pyx_tuple__18);
23485  __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(5, 0, 8, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_setExteriorElementBoundaryTypes, 18, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) __PYX_ERR(0, 18, __pyx_L1_error)
23486 
23487  /* "subsurfaceTransportFunctions.pyx":29
23488  * exteriorElementBoundaryMaterialTypes[ebNE] = elementMaterialTypes[eN]
23489  *
23490  * def setElementBoundariesArray(int nElementBoundaries_global, # <<<<<<<<<<<<<<
23491  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
23492  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
23493  */
23494  __pyx_tuple__20 = PyTuple_Pack(7, __pyx_n_s_nElementBoundaries_global, __pyx_n_s_elementBoundaryElementsArray, __pyx_n_s_elementMaterialTypes, __pyx_n_s_elementBoundaryMaterialTypes, __pyx_n_s_ebN, __pyx_n_s_eN_left, __pyx_n_s_eN_right); if (unlikely(!__pyx_tuple__20)) __PYX_ERR(0, 29, __pyx_L1_error)
23495  __Pyx_GOTREF(__pyx_tuple__20);
23496  __Pyx_GIVEREF(__pyx_tuple__20);
23497  __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(4, 0, 7, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_setElementBoundariesArray, 29, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) __PYX_ERR(0, 29, __pyx_L1_error)
23498 
23499  /* "subsurfaceTransportFunctions.pyx":43
23500  *
23501  * ###
23502  * def setScalarMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes, # <<<<<<<<<<<<<<
23503  * numpy.ndarray[DTYPE_t,ndim=2] q_vals,
23504  * dict material_functions):
23505  */
23506  __pyx_tuple__22 = PyTuple_Pack(6, __pyx_n_s_elementMaterialTypes, __pyx_n_s_q_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_material); if (unlikely(!__pyx_tuple__22)) __PYX_ERR(0, 43, __pyx_L1_error)
23507  __Pyx_GOTREF(__pyx_tuple__22);
23508  __Pyx_GIVEREF(__pyx_tuple__22);
23509  __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(3, 0, 6, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_setScalarMaterialFunctionOverEle, 43, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) __PYX_ERR(0, 43, __pyx_L1_error)
23510 
23511  /* "subsurfaceTransportFunctions.pyx":56
23512  * q_vals[eN,k] = material_functions[material]
23513  *
23514  * def setVectorMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes, # <<<<<<<<<<<<<<
23515  * numpy.ndarray[DTYPE_t,ndim=3] q_vals,
23516  * dict material_functions):
23517  */
23518  __pyx_tuple__24 = PyTuple_Pack(6, __pyx_n_s_elementMaterialTypes, __pyx_n_s_q_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_material); if (unlikely(!__pyx_tuple__24)) __PYX_ERR(0, 56, __pyx_L1_error)
23519  __Pyx_GOTREF(__pyx_tuple__24);
23520  __Pyx_GIVEREF(__pyx_tuple__24);
23521  __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(3, 0, 6, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_setVectorMaterialFunctionOverEle, 56, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) __PYX_ERR(0, 56, __pyx_L1_error)
23522 
23523  /* "subsurfaceTransportFunctions.pyx":69
23524  *
23525  *
23526  * def setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray, # <<<<<<<<<<<<<<
23527  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
23528  * numpy.ndarray[DTYPE_t,ndim=3] ebq_vals,
23529  */
23530  __pyx_tuple__26 = PyTuple_Pack(10, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_ebq_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_ebN_local, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right); if (unlikely(!__pyx_tuple__26)) __PYX_ERR(0, 69, __pyx_L1_error)
23531  __Pyx_GOTREF(__pyx_tuple__26);
23532  __Pyx_GIVEREF(__pyx_tuple__26);
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23534 
23535  /* "subsurfaceTransportFunctions.pyx":91
23536  * material_functions[material_right])
23537  *
23538  * def setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
23539  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
23540  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
23541  */
23542  __pyx_tuple__28 = PyTuple_Pack(15, __pyx_n_s_nd, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_ebq_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_ebN_local, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_I, __pyx_n_s_J, __pyx_n_s_numer, __pyx_n_s_denom); if (unlikely(!__pyx_tuple__28)) __PYX_ERR(0, 91, __pyx_L1_error)
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23546 
23547  /* "subsurfaceTransportFunctions.pyx":118
23548  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
23549  *
23550  * def setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray, # <<<<<<<<<<<<<<
23551  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
23552  * numpy.ndarray[DTYPE_t,ndim=2] ebq_global_vals,
23553  */
23554  __pyx_tuple__30 = PyTuple_Pack(8, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_ebq_global_vals, __pyx_n_s_material_functions, __pyx_n_s_ebN, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_k); if (unlikely(!__pyx_tuple__30)) __PYX_ERR(0, 118, __pyx_L1_error)
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23558 
23559  /* "subsurfaceTransportFunctions.pyx":139
23560  *
23561  *
23562  * def setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
23563  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
23564  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
23565  */
23566  __pyx_tuple__32 = PyTuple_Pack(13, __pyx_n_s_nd, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_ebq_global_vals, __pyx_n_s_material_functions, __pyx_n_s_ebN, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_I, __pyx_n_s_J, __pyx_n_s_numer, __pyx_n_s_denom); if (unlikely(!__pyx_tuple__32)) __PYX_ERR(0, 139, __pyx_L1_error)
23567  __Pyx_GOTREF(__pyx_tuple__32);
23568  __Pyx_GIVEREF(__pyx_tuple__32);
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23570 
23571  /* "subsurfaceTransportFunctions.pyx":165
23572  *
23573  * ###
23574  * def evaluateScalarMaterialFunctionOverElements(double t, # <<<<<<<<<<<<<<
23575  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
23576  * numpy.ndarray[DTYPE_t,ndim=3] x,
23577  */
23578  __pyx_tuple__34 = PyTuple_Pack(8, __pyx_n_s_t, __pyx_n_s_elementMaterialTypes, __pyx_n_s_x, __pyx_n_s_q_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_material); if (unlikely(!__pyx_tuple__34)) __PYX_ERR(0, 165, __pyx_L1_error)
23579  __Pyx_GOTREF(__pyx_tuple__34);
23580  __Pyx_GIVEREF(__pyx_tuple__34);
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23582 
23583  /* "subsurfaceTransportFunctions.pyx":180
23584  * q_vals[eN,k] = material_functions[material](x[eN,k],t)
23585  *
23586  * def evaluateVectorMaterialFunctionOverElements(double t, # <<<<<<<<<<<<<<
23587  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
23588  * numpy.ndarray[DTYPE_t,ndim=3] x,
23589  */
23590  __pyx_tuple__36 = PyTuple_Pack(8, __pyx_n_s_t, __pyx_n_s_elementMaterialTypes, __pyx_n_s_x, __pyx_n_s_q_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_material); if (unlikely(!__pyx_tuple__36)) __PYX_ERR(0, 180, __pyx_L1_error)
23591  __Pyx_GOTREF(__pyx_tuple__36);
23592  __Pyx_GIVEREF(__pyx_tuple__36);
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23594 
23595  /* "subsurfaceTransportFunctions.pyx":195
23596  *
23597  *
23598  * def evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(double t, # <<<<<<<<<<<<<<
23599  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
23600  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
23601  */
23602  __pyx_tuple__38 = PyTuple_Pack(12, __pyx_n_s_t, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_x, __pyx_n_s_ebq_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_ebN_local, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right); if (unlikely(!__pyx_tuple__38)) __PYX_ERR(0, 195, __pyx_L1_error)
23603  __Pyx_GOTREF(__pyx_tuple__38);
23604  __Pyx_GIVEREF(__pyx_tuple__38);
23605  __pyx_codeobj__39 = (PyObject*)__Pyx_PyCode_New(6, 0, 12, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__38, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_evaluateScalarMaterialFunctionOv_2, 195, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__39)) __PYX_ERR(0, 195, __pyx_L1_error)
23606 
23607  /* "subsurfaceTransportFunctions.pyx":219
23608  * material_functions[material_right](x[eN,ebN_local,k],t))
23609  *
23610  * def evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
23611  * double t,
23612  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
23613  */
23614  __pyx_tuple__40 = PyTuple_Pack(17, __pyx_n_s_nd, __pyx_n_s_t, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_x, __pyx_n_s_ebq_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_ebN_local, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_I, __pyx_n_s_J, __pyx_n_s_numer, __pyx_n_s_denom); if (unlikely(!__pyx_tuple__40)) __PYX_ERR(0, 219, __pyx_L1_error)
23615  __Pyx_GOTREF(__pyx_tuple__40);
23616  __Pyx_GIVEREF(__pyx_tuple__40);
23617  __pyx_codeobj__41 = (PyObject*)__Pyx_PyCode_New(7, 0, 17, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__40, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_evaluateSparseTensorMaterialFunc, 219, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__41)) __PYX_ERR(0, 219, __pyx_L1_error)
23618 
23619  /* "subsurfaceTransportFunctions.pyx":248
23620  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
23621  *
23622  * def evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(double t, # <<<<<<<<<<<<<<
23623  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
23624  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
23625  */
23626  __pyx_tuple__42 = PyTuple_Pack(10, __pyx_n_s_t, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_x, __pyx_n_s_ebq_global_vals, __pyx_n_s_material_functions, __pyx_n_s_ebN, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_k); if (unlikely(!__pyx_tuple__42)) __PYX_ERR(0, 248, __pyx_L1_error)
23627  __Pyx_GOTREF(__pyx_tuple__42);
23628  __Pyx_GIVEREF(__pyx_tuple__42);
23629  __pyx_codeobj__43 = (PyObject*)__Pyx_PyCode_New(6, 0, 10, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__42, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_evaluateScalarMaterialFunctionOv_3, 248, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__43)) __PYX_ERR(0, 248, __pyx_L1_error)
23630 
23631  /* "subsurfaceTransportFunctions.pyx":271
23632  *
23633  *
23634  * def evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
23635  * double t,
23636  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
23637  */
23638  __pyx_tuple__44 = PyTuple_Pack(15, __pyx_n_s_nd, __pyx_n_s_t, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_x, __pyx_n_s_ebq_global_vals, __pyx_n_s_material_functions, __pyx_n_s_ebN, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_I, __pyx_n_s_J, __pyx_n_s_numer, __pyx_n_s_denom); if (unlikely(!__pyx_tuple__44)) __PYX_ERR(0, 271, __pyx_L1_error)
23639  __Pyx_GOTREF(__pyx_tuple__44);
23640  __Pyx_GIVEREF(__pyx_tuple__44);
23641  __pyx_codeobj__45 = (PyObject*)__Pyx_PyCode_New(7, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__44, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_evaluateSparseTensorMaterialFunc_2, 271, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__45)) __PYX_ERR(0, 271, __pyx_L1_error)
23642 
23643  /* "subsurfaceTransportFunctions.pyx":301
23644  *
23645  * ##################################################
23646  * def RE_NCP1_evaluateElementCoefficients_Linear(double rho, # <<<<<<<<<<<<<<
23647  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
23648  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
23649  */
23650  __pyx_tuple__46 = PyTuple_Pack(24, __pyx_n_s_rho, __pyx_n_s_gravity, __pyx_n_s_rowptr, __pyx_n_s_colind, __pyx_n_s_KWs, __pyx_n_s_nSpace, __pyx_n_s_nElements_global, __pyx_n_s_nElementBoundaries_element, __pyx_n_s_elementNeighborsArray, __pyx_n_s_elementMaterialTypes, __pyx_n_s_q_flin, __pyx_n_s_q_alin, __pyx_n_s_eN, __pyx_n_s_eN_neighbor, __pyx_n_s_ii, __pyx_n_s_I, __pyx_n_s_ebN, __pyx_n_s_matID, __pyx_n_s_matID_neig, __pyx_n_s_nSpace2, __pyx_n_s_nnz, __pyx_n_s_a_eN, __pyx_n_s_a_neig, __pyx_n_s_a_avg); if (unlikely(!__pyx_tuple__46)) __PYX_ERR(0, 301, __pyx_L1_error)
23651  __Pyx_GOTREF(__pyx_tuple__46);
23652  __Pyx_GIVEREF(__pyx_tuple__46);
23653  __pyx_codeobj__47 = (PyObject*)__Pyx_PyCode_New(12, 0, 24, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__46, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_RE_NCP1_evaluateElementCoefficie, 301, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__47)) __PYX_ERR(0, 301, __pyx_L1_error)
23654 
23655  /* "subsurfaceTransportFunctions.pyx":359
23656  *
23657  *
23658  * def RE_NCP1_evaluateElementCoefficients_VGM(double rho, # <<<<<<<<<<<<<<
23659  * double beta,
23660  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
23661  */
23662  __pyx_tuple__48 = PyTuple_Pack(61, __pyx_n_s_rho, __pyx_n_s_beta, __pyx_n_s_gravity, __pyx_n_s_alpha, __pyx_n_s_n, __pyx_n_s_thetaR, __pyx_n_s_thetaSR, __pyx_n_s_nSpace, __pyx_n_s_nElements_global, __pyx_n_s_nElementBoundaries_element, __pyx_n_s_elementNeighborsArray, __pyx_n_s_elementBarycentersArray, __pyx_n_s_elementMaterialTypes, __pyx_n_s_nDOF_trial_element, __pyx_n_s_u_l2g, __pyx_n_s_u_dof, __pyx_n_s_q_x, __pyx_n_s_q_u, __pyx_n_s_q_mass, __pyx_n_s_q_dmass, __pyx_n_s_q_r, __pyx_n_s_q_kr, __pyx_n_s_q_dkr, __pyx_n_s_q_kr_up, __pyx_n_s_q, __pyx_n_s_psiC, __pyx_n_s_pcBar, __pyx_n_s_pcBar_n, __pyx_n_s_pcBar_nM1, __pyx_n_s_pcBar_nM2, __pyx_n_s_onePlus_pcBar_n, __pyx_n_s_sBar, __pyx_n_s_sqrt_sBar, __pyx_n_s_DsBar_DpsiC, __pyx_n_s_thetaW, __pyx_n_s_DthetaW_DpsiC, __pyx_n_s_vBar, __pyx_n_s_vBar2, __pyx_n_s_DvBar_DpsiC, __pyx_n_s_KWr, __pyx_n_s_DKWr_DpsiC, __pyx_n_s_rho2, __pyx_n_s_thetaS, __pyx_n_s_rhom, __pyx_n_s_drhom, __pyx_n_s_m, __pyx_n_s_u_j, __pyx_n_s_u_eN, __pyx_n_s_u_neig, __pyx_n_s_kr_eN, __pyx_n_s_kr_neig, __pyx_n_s_phi_eN, __pyx_n_s_phi_neig, __pyx_n_s_eN, __pyx_n_s_eN_neighbor, __pyx_n_s_ebN, __pyx_n_s_ii, __pyx_n_s_I, __pyx_n_s_j, __pyx_n_s_matID, __pyx_n_s_nAvgWeight); if (unlikely(!__pyx_tuple__48)) __PYX_ERR(0, 359, __pyx_L1_error)
23663  __Pyx_GOTREF(__pyx_tuple__48);
23664  __Pyx_GIVEREF(__pyx_tuple__48);
23665  __pyx_codeobj__49 = (PyObject*)__Pyx_PyCode_New(24, 0, 61, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__48, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_RE_NCP1_evaluateElementCoefficie_2, 359, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__49)) __PYX_ERR(0, 359, __pyx_L1_error)
23666 
23667  /* "subsurfaceTransportFunctions.pyx":486
23668  * #eN for upwind
23669  *
23670  * def RE_NCP1_getElementResidual(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
23671  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
23672  * numpy.ndarray[ITYPE_t,ndim=1] colind,
23673  */
23674  __pyx_tuple__50 = PyTuple_Pack(42, __pyx_n_s_gravity, __pyx_n_s_rowptr, __pyx_n_s_colind, __pyx_n_s_nSpace, __pyx_n_s_nElements_global, __pyx_n_s_nElementBoundaries_element, __pyx_n_s_elementNeighborsArray, __pyx_n_s_elementBarycentersArray, __pyx_n_s_nDOF_test_element, __pyx_n_s_q_u, __pyx_n_s_q_grad_u, __pyx_n_s_q_grad_w, __pyx_n_s_q_detJ, __pyx_n_s_q_m, __pyx_n_s_q_mt, __pyx_n_s_q_r, __pyx_n_s_q_kr, __pyx_n_s_q_kr_up, __pyx_n_s_q_flin, __pyx_n_s_q_alin, __pyx_n_s_elementResidual, __pyx_n_s_upwindFlag, __pyx_n_s_q, __pyx_n_s_nnz, __pyx_n_s_u_eN, __pyx_n_s_kr_eN, __pyx_n_s_phi_eN, __pyx_n_s_u_neig, __pyx_n_s_kr_neig, __pyx_n_s_phi_neig, __pyx_n_s_eN, __pyx_n_s_eN_neighbor, __pyx_n_s_ii, __pyx_n_s_I, __pyx_n_s_i, __pyx_n_s_ebN, __pyx_n_s_a_up, __pyx_n_s_f_up, __pyx_n_s_nAvgWeight, __pyx_n_s_weight, __pyx_n_s_volFactor, __pyx_n_s_volume); if (unlikely(!__pyx_tuple__50)) __PYX_ERR(0, 486, __pyx_L1_error)
23675  __Pyx_GOTREF(__pyx_tuple__50);
23676  __Pyx_GIVEREF(__pyx_tuple__50);
23677  __pyx_codeobj__51 = (PyObject*)__Pyx_PyCode_New(21, 0, 42, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__50, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_RE_NCP1_getElementResidual, 486, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__51)) __PYX_ERR(0, 486, __pyx_L1_error)
23678 
23679  /* "subsurfaceTransportFunctions.pyx":574
23680  * #i
23681  * #eN
23682  * def RE_NCP1_getElementJacobian(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
23683  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
23684  * numpy.ndarray[ITYPE_t,ndim=1] colind,
23685  */
23686  __pyx_tuple__52 = PyTuple_Pack(51, __pyx_n_s_gravity, __pyx_n_s_rowptr, __pyx_n_s_colind, __pyx_n_s_nSpace, __pyx_n_s_nElements_global, __pyx_n_s_nElementBoundaries_element, __pyx_n_s_elementNeighborsArray, __pyx_n_s_elementBarycentersArray, __pyx_n_s_nDOF_test_element, __pyx_n_s_nDOF_trial_element, __pyx_n_s_q_u, __pyx_n_s_q_grad_u, __pyx_n_s_q_grad_w, __pyx_n_s_q_grad_v, __pyx_n_s_q_detJ, __pyx_n_s_q_m, __pyx_n_s_q_dm, __pyx_n_s_q_mt, __pyx_n_s_q_dmt, __pyx_n_s_q_r, __pyx_n_s_q_kr, __pyx_n_s_q_dkr, __pyx_n_s_q_kr_up, __pyx_n_s_q_flin, __pyx_n_s_q_alin, __pyx_n_s_elementJacobian, __pyx_n_s_upwindFlag, __pyx_n_s_picard, __pyx_n_s_q, __pyx_n_s_nnz, __pyx_n_s_u_eN, __pyx_n_s_kr_eN, __pyx_n_s_phi_eN, __pyx_n_s_u_neig, __pyx_n_s_kr_neig, __pyx_n_s_phi_neig, __pyx_n_s_dkr_up, __pyx_n_s_eN, __pyx_n_s_eN_neighbor, __pyx_n_s_ii, __pyx_n_s_I, __pyx_n_s_a_up, __pyx_n_s_f_up, __pyx_n_s_nAvgWeight, __pyx_n_s_weight, __pyx_n_s_volFactor, __pyx_n_s_thisElementIsUpwind, __pyx_n_s_volume, __pyx_n_s_i, __pyx_n_s_ebN, __pyx_n_s_j); if (unlikely(!__pyx_tuple__52)) __PYX_ERR(0, 574, __pyx_L1_error)
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23688  __Pyx_GIVEREF(__pyx_tuple__52);
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23690 
23691  /* "subsurfaceTransportFunctions.pyx":673
23692  * ##################################################
23693  *
23694  * def updateMass_weakAvg(numpy.ndarray[DTYPE_t,ndim=2] mt, # <<<<<<<<<<<<<<
23695  * numpy.ndarray[DTYPE_t,ndim=3] w,
23696  * numpy.ndarray[DTYPE_t,ndim=2] dV,
23697  */
23698  __pyx_tuple__54 = PyTuple_Pack(9, __pyx_n_s_mt, __pyx_n_s_w, __pyx_n_s_dV, __pyx_n_s_weak_residual, __pyx_n_s_eN, __pyx_n_s_i, __pyx_n_s_k, __pyx_n_s_mt_avg, __pyx_n_s_vol); if (unlikely(!__pyx_tuple__54)) __PYX_ERR(0, 673, __pyx_L1_error)
23699  __Pyx_GOTREF(__pyx_tuple__54);
23700  __Pyx_GIVEREF(__pyx_tuple__54);
23701  __pyx_codeobj__55 = (PyObject*)__Pyx_PyCode_New(4, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__54, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_sub, __pyx_n_s_updateMass_weakAvg, 673, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__55)) __PYX_ERR(0, 673, __pyx_L1_error)
23702 
23703  /* "subsurfaceTransportFunctions.pyx":692
23704  * #cek hack, seems like cython needed some help figuring out that the rvalue was a float
23705  * weak_residual[eN,i] += float(mt_avg*w[eN,k,i]*dV[eN,k])
23706  * def updateMassJacobian_weakAvg(numpy.ndarray[DTYPE_t,ndim=2] dmt, # <<<<<<<<<<<<<<
23707  * numpy.ndarray[DTYPE_t,ndim=3] w,
23708  * numpy.ndarray[DTYPE_t,ndim=3] v,
23709  */
23710  __pyx_tuple__56 = PyTuple_Pack(11, __pyx_n_s_dmt, __pyx_n_s_w, __pyx_n_s_v, __pyx_n_s_dV, __pyx_n_s_jacobian_weak_residual, __pyx_n_s_eN, __pyx_n_s_i, __pyx_n_s_j, __pyx_n_s_k, __pyx_n_s_dmtj_avg, __pyx_n_s_vol); if (unlikely(!__pyx_tuple__56)) __PYX_ERR(0, 692, __pyx_L1_error)
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23714 
23715  /* "subsurfaceTransportFunctions.pyx":717
23716  * #ELLAM
23717  * ########################################################################
23718  * def calculateNormalFlux(numpy.ndarray[DTYPE_t,ndim=4] v, # <<<<<<<<<<<<<<
23719  * numpy.ndarray[DTYPE_t,ndim=4] n,
23720  * numpy.ndarray[DTYPE_t,ndim=3] dS,
23721  */
23722  __pyx_tuple__58 = PyTuple_Pack(9, __pyx_n_s_v, __pyx_n_s_n, __pyx_n_s_dS, __pyx_n_s_flux, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_kb, __pyx_n_s_integral, __pyx_n_s_I); if (unlikely(!__pyx_tuple__58)) __PYX_ERR(0, 717, __pyx_L1_error)
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23726 
23727  /* "subsurfaceTransportFunctions.pyx":732
23728  * flux[eN,ebN] = integral
23729  *
23730  * def computeSimpleCharacteristicVelocityFromElementVelocity(numpy.ndarray[DTYPE_t,ndim=3] df, # <<<<<<<<<<<<<<
23731  * numpy.ndarray[DTYPE_t,ndim=3] characteristic_velocity,
23732  * numpy.ndarray[DTYPE_t,ndim=2] dm,
23733  */
23734  __pyx_tuple__60 = PyTuple_Pack(9, __pyx_n_s_df, __pyx_n_s_characteristic_velocity, __pyx_n_s_dm, __pyx_n_s_dV, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_I, __pyx_n_s_omega_e, __pyx_n_s_vol_e); if (unlikely(!__pyx_tuple__60)) __PYX_ERR(0, 732, __pyx_L1_error)
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23738 
23739  /* "subsurfaceTransportFunctions.pyx":753
23740  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12)
23741  *
23742  * def computeSimpleCharacteristicVelocityFromVelocityDOFs(numpy.ndarray[DTYPE_t,ndim=1] df_dofs, # <<<<<<<<<<<<<<
23743  * numpy.ndarray[DTYPE_t,ndim=1] characteristic_velocity_dofs,
23744  * numpy.ndarray[ITYPE_t,ndim=2] l2g,
23745  */
23746  __pyx_tuple__62 = PyTuple_Pack(11, __pyx_n_s_df_dofs, __pyx_n_s_characteristic_velocity_dofs, __pyx_n_s_l2g, __pyx_n_s_dm, __pyx_n_s_dV, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_j, __pyx_n_s_J, __pyx_n_s_omega_e, __pyx_n_s_vol_e); if (unlikely(!__pyx_tuple__62)) __PYX_ERR(0, 753, __pyx_L1_error)
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23750 
23751  /* "subsurfaceTransportFunctions.pyx":776
23752  *
23753  * #problem specific velocity evaluation
23754  * def rotatingGaussianElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
23755  * double t,
23756  * double tForReversal,
23757  */
23758  __pyx_tuple__64 = PyTuple_Pack(12, __pyx_n_s_transient, __pyx_n_s_t, __pyx_n_s_tForReversal, __pyx_n_s_clock, __pyx_n_s_xc, __pyx_n_s_yc, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_zvelocity, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_pi); if (unlikely(!__pyx_tuple__64)) __PYX_ERR(0, 776, __pyx_L1_error)
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23762 
23763  /* "subsurfaceTransportFunctions.pyx":816
23764  *
23765  *
23766  * def rotatingGaussianElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
23767  * double t,
23768  * double tForReversal,
23769  */
23770  __pyx_tuple__66 = PyTuple_Pack(13, __pyx_n_s_transient, __pyx_n_s_t, __pyx_n_s_tForReversal, __pyx_n_s_clock, __pyx_n_s_xc, __pyx_n_s_yc, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_zvelocity, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_k, __pyx_n_s_pi); if (unlikely(!__pyx_tuple__66)) __PYX_ERR(0, 816, __pyx_L1_error)
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23774 
23775  /* "subsurfaceTransportFunctions.pyx":859
23776  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
23777  *
23778  * def helicalElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
23779  * double t,
23780  * double tForReversal,
23781  */
23782  __pyx_tuple__68 = PyTuple_Pack(12, __pyx_n_s_transient, __pyx_n_s_t, __pyx_n_s_tForReversal, __pyx_n_s_clock, __pyx_n_s_zVelocity, __pyx_n_s_xc, __pyx_n_s_yc, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_pi); if (unlikely(!__pyx_tuple__68)) __PYX_ERR(0, 859, __pyx_L1_error)
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23784  __Pyx_GIVEREF(__pyx_tuple__68);
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23786 
23787  /* "subsurfaceTransportFunctions.pyx":884
23788  * v[eN,k,2]=zVelocity
23789  *
23790  * def helicalElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
23791  * double t,
23792  * double tForReversal,
23793  */
23794  __pyx_tuple__70 = PyTuple_Pack(13, __pyx_n_s_transient, __pyx_n_s_t, __pyx_n_s_tForReversal, __pyx_n_s_clock, __pyx_n_s_zVelocity, __pyx_n_s_xc, __pyx_n_s_yc, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_k, __pyx_n_s_pi); if (unlikely(!__pyx_tuple__70)) __PYX_ERR(0, 884, __pyx_L1_error)
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23798 
23799  /* "subsurfaceTransportFunctions.pyx":911
23800  * v[eN,ebN,k,2]=zVelocity
23801  *
23802  * def vortexElementVelocityEval3(double t, # <<<<<<<<<<<<<<
23803  * numpy.ndarray[DTYPE_t,ndim=3] x,
23804  * numpy.ndarray[DTYPE_t,ndim=3] v):
23805  */
23806  __pyx_tuple__72 = PyTuple_Pack(7, __pyx_n_s_t, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_pi, __pyx_n_s_one8); if (unlikely(!__pyx_tuple__72)) __PYX_ERR(0, 911, __pyx_L1_error)
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23808  __Pyx_GIVEREF(__pyx_tuple__72);
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23810 
23811  /* "subsurfaceTransportFunctions.pyx":924
23812  *
23813  *
23814  * def vortexElementVelocityEval4(double t, # <<<<<<<<<<<<<<
23815  * numpy.ndarray[DTYPE_t,ndim=4] x,
23816  * numpy.ndarray[DTYPE_t,ndim=4] v):
23817  */
23818  __pyx_tuple__74 = PyTuple_Pack(8, __pyx_n_s_t, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_ebN, __pyx_n_s_pi, __pyx_n_s_one8); if (unlikely(!__pyx_tuple__74)) __PYX_ERR(0, 924, __pyx_L1_error)
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23822  __Pyx_RefNannyFinishContext();
23823  return 0;
23824  __pyx_L1_error:;
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23828 
23829 static int __Pyx_InitGlobals(void) {
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23831  __pyx_float_0_0 = PyFloat_FromDouble(0.0); if (unlikely(!__pyx_float_0_0)) __PYX_ERR(0, 1, __pyx_L1_error)
23832  __pyx_float_0_5 = PyFloat_FromDouble(0.5); if (unlikely(!__pyx_float_0_5)) __PYX_ERR(0, 1, __pyx_L1_error)
23833  __pyx_float_2_0 = PyFloat_FromDouble(2.0); if (unlikely(!__pyx_float_2_0)) __PYX_ERR(0, 1, __pyx_L1_error)
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23835  return 0;
23836  __pyx_L1_error:;
23837  return -1;
23838 }
23839 
23840 #if PY_MAJOR_VERSION < 3
23841 PyMODINIT_FUNC initsubsurfaceTransportFunctions(void); /*proto*/
23842 PyMODINIT_FUNC initsubsurfaceTransportFunctions(void)
23843 #else
23844 PyMODINIT_FUNC PyInit_subsurfaceTransportFunctions(void); /*proto*/
23845 PyMODINIT_FUNC PyInit_subsurfaceTransportFunctions(void)
23846 #endif
23847 {
23848  PyObject *__pyx_t_1 = NULL;
23849  __Pyx_RefNannyDeclarations
23850  #if CYTHON_REFNANNY
23851  __Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny");
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23863  __pyx_empty_unicode = PyUnicode_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_unicode)) __PYX_ERR(0, 1, __pyx_L1_error)
23864  #ifdef __Pyx_CyFunction_USED
23865  if (__pyx_CyFunction_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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23868  if (__pyx_FusedFunction_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
23869  #endif
23870  #ifdef __Pyx_Coroutine_USED
23871  if (__pyx_Coroutine_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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23873  #ifdef __Pyx_Generator_USED
23874  if (__pyx_Generator_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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23878  #endif
23879  /*--- Library function declarations ---*/
23880  /*--- Threads initialization code ---*/
23881  #if defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS
23882  #ifdef WITH_THREAD /* Python build with threading support? */
23883  PyEval_InitThreads();
23884  #endif
23885  #endif
23886  /*--- Module creation code ---*/
23887  #if PY_MAJOR_VERSION < 3
23888  __pyx_m = Py_InitModule4("subsurfaceTransportFunctions", __pyx_methods, 0, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m);
23889  #else
23890  __pyx_m = PyModule_Create(&__pyx_moduledef);
23891  #endif
23892  if (unlikely(!__pyx_m)) __PYX_ERR(0, 1, __pyx_L1_error)
23893  __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(0, 1, __pyx_L1_error)
23894  Py_INCREF(__pyx_d);
23895  __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(0, 1, __pyx_L1_error)
23896  #if CYTHON_COMPILING_IN_PYPY
23897  Py_INCREF(__pyx_b);
23898  #endif
23899  if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) __PYX_ERR(0, 1, __pyx_L1_error);
23900  /*--- Initialize various global constants etc. ---*/
23901  if (__Pyx_InitGlobals() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
23902  #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT)
23903  if (__Pyx_init_sys_getdefaultencoding_params() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
23904  #endif
23905  if (__pyx_module_is_main_subsurfaceTransportFunctions) {
23906  if (PyObject_SetAttrString(__pyx_m, "__name__", __pyx_n_s_main) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
23907  }
23908  #if PY_MAJOR_VERSION >= 3
23909  {
23910  PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) __PYX_ERR(0, 1, __pyx_L1_error)
23911  if (!PyDict_GetItemString(modules, "subsurfaceTransportFunctions")) {
23912  if (unlikely(PyDict_SetItemString(modules, "subsurfaceTransportFunctions", __pyx_m) < 0)) __PYX_ERR(0, 1, __pyx_L1_error)
23913  }
23914  }
23915  #endif
23916  /*--- Builtin init code ---*/
23917  if (__Pyx_InitCachedBuiltins() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
23918  /*--- Constants init code ---*/
23919  if (__Pyx_InitCachedConstants() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
23920  /*--- Global init code ---*/
23921  /*--- Variable export code ---*/
23922  /*--- Function export code ---*/
23923  /*--- Type init code ---*/
23924  /*--- Type import code ---*/
23925  __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "type",
23926  #if CYTHON_COMPILING_IN_PYPY
23927  sizeof(PyTypeObject),
23928  #else
23929  sizeof(PyHeapTypeObject),
23930  #endif
23931  0); if (unlikely(!__pyx_ptype_7cpython_4type_type)) __PYX_ERR(2, 9, __pyx_L1_error)
23932  __pyx_ptype_5numpy_dtype = __Pyx_ImportType("numpy", "dtype", sizeof(PyArray_Descr), 0); if (unlikely(!__pyx_ptype_5numpy_dtype)) __PYX_ERR(1, 155, __pyx_L1_error)
23933  __pyx_ptype_5numpy_flatiter = __Pyx_ImportType("numpy", "flatiter", sizeof(PyArrayIterObject), 0); if (unlikely(!__pyx_ptype_5numpy_flatiter)) __PYX_ERR(1, 168, __pyx_L1_error)
23934  __pyx_ptype_5numpy_broadcast = __Pyx_ImportType("numpy", "broadcast", sizeof(PyArrayMultiIterObject), 0); if (unlikely(!__pyx_ptype_5numpy_broadcast)) __PYX_ERR(1, 172, __pyx_L1_error)
23935  __pyx_ptype_5numpy_ndarray = __Pyx_ImportType("numpy", "ndarray", sizeof(PyArrayObject), 0); if (unlikely(!__pyx_ptype_5numpy_ndarray)) __PYX_ERR(1, 181, __pyx_L1_error)
23936  __pyx_ptype_5numpy_ufunc = __Pyx_ImportType("numpy", "ufunc", sizeof(PyUFuncObject), 0); if (unlikely(!__pyx_ptype_5numpy_ufunc)) __PYX_ERR(1, 861, __pyx_L1_error)
23937  /*--- Variable import code ---*/
23938  /*--- Function import code ---*/
23939  /*--- Execution code ---*/
23940  #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED)
23941  if (__Pyx_patch_abc() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
23942  #endif
23943 
23944  /* "subsurfaceTransportFunctions.pyx":1
23945  * import numpy # <<<<<<<<<<<<<<
23946  * cimport numpy
23947  * cdef extern from "math.h":
23948  */
23949  __pyx_t_1 = __Pyx_Import(__pyx_n_s_numpy, 0, -1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error)
23950  __Pyx_GOTREF(__pyx_t_1);
23951  if (PyDict_SetItem(__pyx_d, __pyx_n_s_numpy, __pyx_t_1) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
23952  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
23953 
23954  /* "subsurfaceTransportFunctions.pyx":18
23955  * ctypedef int ITYPE_t
23956  *
23957  * def setExteriorElementBoundaryTypes(int nExteriorElementBoundaries_global, # <<<<<<<<<<<<<<
23958  * numpy.ndarray[ITYPE_t,ndim=1] exteriorElementBoundariesArray,
23959  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
23960  */
23961  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_1setExteriorElementBoundaryTypes, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 18, __pyx_L1_error)
23962  __Pyx_GOTREF(__pyx_t_1);
23963  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setExteriorElementBoundaryTypes, __pyx_t_1) < 0) __PYX_ERR(0, 18, __pyx_L1_error)
23964  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
23965 
23966  /* "subsurfaceTransportFunctions.pyx":29
23967  * exteriorElementBoundaryMaterialTypes[ebNE] = elementMaterialTypes[eN]
23968  *
23969  * def setElementBoundariesArray(int nElementBoundaries_global, # <<<<<<<<<<<<<<
23970  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
23971  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
23972  */
23973  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_3setElementBoundariesArray, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 29, __pyx_L1_error)
23974  __Pyx_GOTREF(__pyx_t_1);
23975  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setElementBoundariesArray, __pyx_t_1) < 0) __PYX_ERR(0, 29, __pyx_L1_error)
23976  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
23977 
23978  /* "subsurfaceTransportFunctions.pyx":43
23979  *
23980  * ###
23981  * def setScalarMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes, # <<<<<<<<<<<<<<
23982  * numpy.ndarray[DTYPE_t,ndim=2] q_vals,
23983  * dict material_functions):
23984  */
23985  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_5setScalarMaterialFunctionOverElements, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 43, __pyx_L1_error)
23986  __Pyx_GOTREF(__pyx_t_1);
23987  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setScalarMaterialFunctionOverEle, __pyx_t_1) < 0) __PYX_ERR(0, 43, __pyx_L1_error)
23988  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
23989 
23990  /* "subsurfaceTransportFunctions.pyx":56
23991  * q_vals[eN,k] = material_functions[material]
23992  *
23993  * def setVectorMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes, # <<<<<<<<<<<<<<
23994  * numpy.ndarray[DTYPE_t,ndim=3] q_vals,
23995  * dict material_functions):
23996  */
23997  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_7setVectorMaterialFunctionOverElements, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 56, __pyx_L1_error)
23998  __Pyx_GOTREF(__pyx_t_1);
23999  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setVectorMaterialFunctionOverEle, __pyx_t_1) < 0) __PYX_ERR(0, 56, __pyx_L1_error)
24000  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24001 
24002  /* "subsurfaceTransportFunctions.pyx":69
24003  *
24004  *
24005  * def setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray, # <<<<<<<<<<<<<<
24006  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24007  * numpy.ndarray[DTYPE_t,ndim=3] ebq_vals,
24008  */
24009  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_9setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 69, __pyx_L1_error)
24010  __Pyx_GOTREF(__pyx_t_1);
24011  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setScalarMaterialFunctionOverEle_2, __pyx_t_1) < 0) __PYX_ERR(0, 69, __pyx_L1_error)
24012  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24013 
24014  /* "subsurfaceTransportFunctions.pyx":91
24015  * material_functions[material_right])
24016  *
24017  * def setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24018  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24019  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24020  */
24021  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_11setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 91, __pyx_L1_error)
24022  __Pyx_GOTREF(__pyx_t_1);
24023  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setSparseTensorMaterialFunctionO, __pyx_t_1) < 0) __PYX_ERR(0, 91, __pyx_L1_error)
24024  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24025 
24026  /* "subsurfaceTransportFunctions.pyx":118
24027  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
24028  *
24029  * def setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray, # <<<<<<<<<<<<<<
24030  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24031  * numpy.ndarray[DTYPE_t,ndim=2] ebq_global_vals,
24032  */
24033  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_13setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 118, __pyx_L1_error)
24034  __Pyx_GOTREF(__pyx_t_1);
24035  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setScalarMaterialFunctionOverGlo, __pyx_t_1) < 0) __PYX_ERR(0, 118, __pyx_L1_error)
24036  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24037 
24038  /* "subsurfaceTransportFunctions.pyx":139
24039  *
24040  *
24041  * def setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24042  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24043  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24044  */
24045  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_15setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 139, __pyx_L1_error)
24046  __Pyx_GOTREF(__pyx_t_1);
24047  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setSparseTensorMaterialFunctionO_2, __pyx_t_1) < 0) __PYX_ERR(0, 139, __pyx_L1_error)
24048  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24049 
24050  /* "subsurfaceTransportFunctions.pyx":165
24051  *
24052  * ###
24053  * def evaluateScalarMaterialFunctionOverElements(double t, # <<<<<<<<<<<<<<
24054  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
24055  * numpy.ndarray[DTYPE_t,ndim=3] x,
24056  */
24057  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_17evaluateScalarMaterialFunctionOverElements, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 165, __pyx_L1_error)
24058  __Pyx_GOTREF(__pyx_t_1);
24059  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateScalarMaterialFunctionOv, __pyx_t_1) < 0) __PYX_ERR(0, 165, __pyx_L1_error)
24060  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24061 
24062  /* "subsurfaceTransportFunctions.pyx":180
24063  * q_vals[eN,k] = material_functions[material](x[eN,k],t)
24064  *
24065  * def evaluateVectorMaterialFunctionOverElements(double t, # <<<<<<<<<<<<<<
24066  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
24067  * numpy.ndarray[DTYPE_t,ndim=3] x,
24068  */
24069  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_19evaluateVectorMaterialFunctionOverElements, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 180, __pyx_L1_error)
24070  __Pyx_GOTREF(__pyx_t_1);
24071  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateVectorMaterialFunctionOv, __pyx_t_1) < 0) __PYX_ERR(0, 180, __pyx_L1_error)
24072  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24073 
24074  /* "subsurfaceTransportFunctions.pyx":195
24075  *
24076  *
24077  * def evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(double t, # <<<<<<<<<<<<<<
24078  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24079  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24080  */
24081  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_21evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 195, __pyx_L1_error)
24082  __Pyx_GOTREF(__pyx_t_1);
24083  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateScalarMaterialFunctionOv_2, __pyx_t_1) < 0) __PYX_ERR(0, 195, __pyx_L1_error)
24084  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24085 
24086  /* "subsurfaceTransportFunctions.pyx":219
24087  * material_functions[material_right](x[eN,ebN_local,k],t))
24088  *
24089  * def evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24090  * double t,
24091  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24092  */
24093  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_23evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 219, __pyx_L1_error)
24094  __Pyx_GOTREF(__pyx_t_1);
24095  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateSparseTensorMaterialFunc, __pyx_t_1) < 0) __PYX_ERR(0, 219, __pyx_L1_error)
24096  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24097 
24098  /* "subsurfaceTransportFunctions.pyx":248
24099  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
24100  *
24101  * def evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(double t, # <<<<<<<<<<<<<<
24102  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24103  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24104  */
24105  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_25evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 248, __pyx_L1_error)
24106  __Pyx_GOTREF(__pyx_t_1);
24107  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateScalarMaterialFunctionOv_3, __pyx_t_1) < 0) __PYX_ERR(0, 248, __pyx_L1_error)
24108  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24109 
24110  /* "subsurfaceTransportFunctions.pyx":271
24111  *
24112  *
24113  * def evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24114  * double t,
24115  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24116  */
24117  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_27evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 271, __pyx_L1_error)
24118  __Pyx_GOTREF(__pyx_t_1);
24119  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateSparseTensorMaterialFunc_2, __pyx_t_1) < 0) __PYX_ERR(0, 271, __pyx_L1_error)
24120  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24121 
24122  /* "subsurfaceTransportFunctions.pyx":301
24123  *
24124  * ##################################################
24125  * def RE_NCP1_evaluateElementCoefficients_Linear(double rho, # <<<<<<<<<<<<<<
24126  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
24127  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
24128  */
24129  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_29RE_NCP1_evaluateElementCoefficients_Linear, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 301, __pyx_L1_error)
24130  __Pyx_GOTREF(__pyx_t_1);
24131  if (PyDict_SetItem(__pyx_d, __pyx_n_s_RE_NCP1_evaluateElementCoefficie, __pyx_t_1) < 0) __PYX_ERR(0, 301, __pyx_L1_error)
24132  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24133 
24134  /* "subsurfaceTransportFunctions.pyx":359
24135  *
24136  *
24137  * def RE_NCP1_evaluateElementCoefficients_VGM(double rho, # <<<<<<<<<<<<<<
24138  * double beta,
24139  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
24140  */
24141  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_31RE_NCP1_evaluateElementCoefficients_VGM, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 359, __pyx_L1_error)
24142  __Pyx_GOTREF(__pyx_t_1);
24143  if (PyDict_SetItem(__pyx_d, __pyx_n_s_RE_NCP1_evaluateElementCoefficie_2, __pyx_t_1) < 0) __PYX_ERR(0, 359, __pyx_L1_error)
24144  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24145 
24146  /* "subsurfaceTransportFunctions.pyx":486
24147  * #eN for upwind
24148  *
24149  * def RE_NCP1_getElementResidual(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
24150  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
24151  * numpy.ndarray[ITYPE_t,ndim=1] colind,
24152  */
24153  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_33RE_NCP1_getElementResidual, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 486, __pyx_L1_error)
24154  __Pyx_GOTREF(__pyx_t_1);
24155  if (PyDict_SetItem(__pyx_d, __pyx_n_s_RE_NCP1_getElementResidual, __pyx_t_1) < 0) __PYX_ERR(0, 486, __pyx_L1_error)
24156  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24157 
24158  /* "subsurfaceTransportFunctions.pyx":574
24159  * #i
24160  * #eN
24161  * def RE_NCP1_getElementJacobian(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
24162  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
24163  * numpy.ndarray[ITYPE_t,ndim=1] colind,
24164  */
24165  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 574, __pyx_L1_error)
24166  __Pyx_GOTREF(__pyx_t_1);
24167  if (PyDict_SetItem(__pyx_d, __pyx_n_s_RE_NCP1_getElementJacobian, __pyx_t_1) < 0) __PYX_ERR(0, 574, __pyx_L1_error)
24168  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24169 
24170  /* "subsurfaceTransportFunctions.pyx":673
24171  * ##################################################
24172  *
24173  * def updateMass_weakAvg(numpy.ndarray[DTYPE_t,ndim=2] mt, # <<<<<<<<<<<<<<
24174  * numpy.ndarray[DTYPE_t,ndim=3] w,
24175  * numpy.ndarray[DTYPE_t,ndim=2] dV,
24176  */
24177  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_37updateMass_weakAvg, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 673, __pyx_L1_error)
24178  __Pyx_GOTREF(__pyx_t_1);
24179  if (PyDict_SetItem(__pyx_d, __pyx_n_s_updateMass_weakAvg, __pyx_t_1) < 0) __PYX_ERR(0, 673, __pyx_L1_error)
24180  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24181 
24182  /* "subsurfaceTransportFunctions.pyx":692
24183  * #cek hack, seems like cython needed some help figuring out that the rvalue was a float
24184  * weak_residual[eN,i] += float(mt_avg*w[eN,k,i]*dV[eN,k])
24185  * def updateMassJacobian_weakAvg(numpy.ndarray[DTYPE_t,ndim=2] dmt, # <<<<<<<<<<<<<<
24186  * numpy.ndarray[DTYPE_t,ndim=3] w,
24187  * numpy.ndarray[DTYPE_t,ndim=3] v,
24188  */
24189  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_39updateMassJacobian_weakAvg, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 692, __pyx_L1_error)
24190  __Pyx_GOTREF(__pyx_t_1);
24191  if (PyDict_SetItem(__pyx_d, __pyx_n_s_updateMassJacobian_weakAvg, __pyx_t_1) < 0) __PYX_ERR(0, 692, __pyx_L1_error)
24192  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24193 
24194  /* "subsurfaceTransportFunctions.pyx":717
24195  * #ELLAM
24196  * ########################################################################
24197  * def calculateNormalFlux(numpy.ndarray[DTYPE_t,ndim=4] v, # <<<<<<<<<<<<<<
24198  * numpy.ndarray[DTYPE_t,ndim=4] n,
24199  * numpy.ndarray[DTYPE_t,ndim=3] dS,
24200  */
24201  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_41calculateNormalFlux, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 717, __pyx_L1_error)
24202  __Pyx_GOTREF(__pyx_t_1);
24203  if (PyDict_SetItem(__pyx_d, __pyx_n_s_calculateNormalFlux, __pyx_t_1) < 0) __PYX_ERR(0, 717, __pyx_L1_error)
24204  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24205 
24206  /* "subsurfaceTransportFunctions.pyx":732
24207  * flux[eN,ebN] = integral
24208  *
24209  * def computeSimpleCharacteristicVelocityFromElementVelocity(numpy.ndarray[DTYPE_t,ndim=3] df, # <<<<<<<<<<<<<<
24210  * numpy.ndarray[DTYPE_t,ndim=3] characteristic_velocity,
24211  * numpy.ndarray[DTYPE_t,ndim=2] dm,
24212  */
24213  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_43computeSimpleCharacteristicVelocityFromElementVelocity, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 732, __pyx_L1_error)
24214  __Pyx_GOTREF(__pyx_t_1);
24215  if (PyDict_SetItem(__pyx_d, __pyx_n_s_computeSimpleCharacteristicVeloc, __pyx_t_1) < 0) __PYX_ERR(0, 732, __pyx_L1_error)
24216  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24217 
24218  /* "subsurfaceTransportFunctions.pyx":753
24219  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12)
24220  *
24221  * def computeSimpleCharacteristicVelocityFromVelocityDOFs(numpy.ndarray[DTYPE_t,ndim=1] df_dofs, # <<<<<<<<<<<<<<
24222  * numpy.ndarray[DTYPE_t,ndim=1] characteristic_velocity_dofs,
24223  * numpy.ndarray[ITYPE_t,ndim=2] l2g,
24224  */
24225  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_45computeSimpleCharacteristicVelocityFromVelocityDOFs, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 753, __pyx_L1_error)
24226  __Pyx_GOTREF(__pyx_t_1);
24227  if (PyDict_SetItem(__pyx_d, __pyx_n_s_computeSimpleCharacteristicVeloc_2, __pyx_t_1) < 0) __PYX_ERR(0, 753, __pyx_L1_error)
24228  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24229 
24230  /* "subsurfaceTransportFunctions.pyx":776
24231  *
24232  * #problem specific velocity evaluation
24233  * def rotatingGaussianElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
24234  * double t,
24235  * double tForReversal,
24236  */
24237  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_47rotatingGaussianElementVelocityEval3, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 776, __pyx_L1_error)
24238  __Pyx_GOTREF(__pyx_t_1);
24239  if (PyDict_SetItem(__pyx_d, __pyx_n_s_rotatingGaussianElementVelocityE, __pyx_t_1) < 0) __PYX_ERR(0, 776, __pyx_L1_error)
24240  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24241 
24242  /* "subsurfaceTransportFunctions.pyx":816
24243  *
24244  *
24245  * def rotatingGaussianElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
24246  * double t,
24247  * double tForReversal,
24248  */
24249  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_49rotatingGaussianElementVelocityEval4, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 816, __pyx_L1_error)
24250  __Pyx_GOTREF(__pyx_t_1);
24251  if (PyDict_SetItem(__pyx_d, __pyx_n_s_rotatingGaussianElementVelocityE_2, __pyx_t_1) < 0) __PYX_ERR(0, 816, __pyx_L1_error)
24252  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24253 
24254  /* "subsurfaceTransportFunctions.pyx":859
24255  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
24256  *
24257  * def helicalElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
24258  * double t,
24259  * double tForReversal,
24260  */
24261  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_51helicalElementVelocityEval3, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 859, __pyx_L1_error)
24262  __Pyx_GOTREF(__pyx_t_1);
24263  if (PyDict_SetItem(__pyx_d, __pyx_n_s_helicalElementVelocityEval3, __pyx_t_1) < 0) __PYX_ERR(0, 859, __pyx_L1_error)
24264  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24265 
24266  /* "subsurfaceTransportFunctions.pyx":884
24267  * v[eN,k,2]=zVelocity
24268  *
24269  * def helicalElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
24270  * double t,
24271  * double tForReversal,
24272  */
24273  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_53helicalElementVelocityEval4, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 884, __pyx_L1_error)
24274  __Pyx_GOTREF(__pyx_t_1);
24275  if (PyDict_SetItem(__pyx_d, __pyx_n_s_helicalElementVelocityEval4, __pyx_t_1) < 0) __PYX_ERR(0, 884, __pyx_L1_error)
24276  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24277 
24278  /* "subsurfaceTransportFunctions.pyx":911
24279  * v[eN,ebN,k,2]=zVelocity
24280  *
24281  * def vortexElementVelocityEval3(double t, # <<<<<<<<<<<<<<
24282  * numpy.ndarray[DTYPE_t,ndim=3] x,
24283  * numpy.ndarray[DTYPE_t,ndim=3] v):
24284  */
24285  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_55vortexElementVelocityEval3, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 911, __pyx_L1_error)
24286  __Pyx_GOTREF(__pyx_t_1);
24287  if (PyDict_SetItem(__pyx_d, __pyx_n_s_vortexElementVelocityEval3, __pyx_t_1) < 0) __PYX_ERR(0, 911, __pyx_L1_error)
24288  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24289 
24290  /* "subsurfaceTransportFunctions.pyx":924
24291  *
24292  *
24293  * def vortexElementVelocityEval4(double t, # <<<<<<<<<<<<<<
24294  * numpy.ndarray[DTYPE_t,ndim=4] x,
24295  * numpy.ndarray[DTYPE_t,ndim=4] v):
24296  */
24297  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_57vortexElementVelocityEval4, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 924, __pyx_L1_error)
24298  __Pyx_GOTREF(__pyx_t_1);
24299  if (PyDict_SetItem(__pyx_d, __pyx_n_s_vortexElementVelocityEval4, __pyx_t_1) < 0) __PYX_ERR(0, 924, __pyx_L1_error)
24300  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24301 
24302  /* "subsurfaceTransportFunctions.pyx":1
24303  * import numpy # <<<<<<<<<<<<<<
24304  * cimport numpy
24305  * cdef extern from "math.h":
24306  */
24307  __pyx_t_1 = PyDict_New(); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error)
24308  __Pyx_GOTREF(__pyx_t_1);
24309  if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_1) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
24310  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24311 
24312  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":997
24313  * raise ImportError("numpy.core.umath failed to import")
24314  *
24315  * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
24316  * try:
24317  * _import_umath()
24318  */
24319 
24320  /*--- Wrapped vars code ---*/
24321 
24322  goto __pyx_L0;
24323  __pyx_L1_error:;
24324  __Pyx_XDECREF(__pyx_t_1);
24325  if (__pyx_m) {
24326  if (__pyx_d) {
24327  __Pyx_AddTraceback("init subsurfaceTransportFunctions", __pyx_clineno, __pyx_lineno, __pyx_filename);
24328  }
24329  Py_DECREF(__pyx_m); __pyx_m = 0;
24330  } else if (!PyErr_Occurred()) {
24331  PyErr_SetString(PyExc_ImportError, "init subsurfaceTransportFunctions");
24332  }
24333  __pyx_L0:;
24334  __Pyx_RefNannyFinishContext();
24335  #if PY_MAJOR_VERSION < 3
24336  return;
24337  #else
24338  return __pyx_m;
24339  #endif
24340 }
24341 
24342 /* --- Runtime support code --- */
24343 /* Refnanny */
24344 #if CYTHON_REFNANNY
24345 static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) {
24346  PyObject *m = NULL, *p = NULL;
24347  void *r = NULL;
24348  m = PyImport_ImportModule((char *)modname);
24349  if (!m) goto end;
24350  p = PyObject_GetAttrString(m, (char *)"RefNannyAPI");
24351  if (!p) goto end;
24352  r = PyLong_AsVoidPtr(p);
24353 end:
24354  Py_XDECREF(p);
24355  Py_XDECREF(m);
24356  return (__Pyx_RefNannyAPIStruct *)r;
24357 }
24358 #endif
24359 
24360 /* GetBuiltinName */
24361 static PyObject *__Pyx_GetBuiltinName(PyObject *name) {
24362  PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name);
24363  if (unlikely(!result)) {
24364  PyErr_Format(PyExc_NameError,
24365 #if PY_MAJOR_VERSION >= 3
24366  "name '%U' is not defined", name);
24367 #else
24368  "name '%.200s' is not defined", PyString_AS_STRING(name));
24369 #endif
24370  }
24371  return result;
24372 }
24373 
24374 /* RaiseArgTupleInvalid */
24375 static void __Pyx_RaiseArgtupleInvalid(
24376  const char* func_name,
24377  int exact,
24378  Py_ssize_t num_min,
24379  Py_ssize_t num_max,
24380  Py_ssize_t num_found)
24381 {
24382  Py_ssize_t num_expected;
24383  const char *more_or_less;
24384  if (num_found < num_min) {
24385  num_expected = num_min;
24386  more_or_less = "at least";
24387  } else {
24388  num_expected = num_max;
24389  more_or_less = "at most";
24390  }
24391  if (exact) {
24392  more_or_less = "exactly";
24393  }
24394  PyErr_Format(PyExc_TypeError,
24395  "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)",
24396  func_name, more_or_less, num_expected,
24397  (num_expected == 1) ? "" : "s", num_found);
24398 }
24399 
24400 /* RaiseDoubleKeywords */
24401 static void __Pyx_RaiseDoubleKeywordsError(
24402  const char* func_name,
24403  PyObject* kw_name)
24404 {
24405  PyErr_Format(PyExc_TypeError,
24406  #if PY_MAJOR_VERSION >= 3
24407  "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
24408  #else
24409  "%s() got multiple values for keyword argument '%s'", func_name,
24410  PyString_AsString(kw_name));
24411  #endif
24412 }
24413 
24414 /* ParseKeywords */
24415 static int __Pyx_ParseOptionalKeywords(
24416  PyObject *kwds,
24417  PyObject **argnames[],
24418  PyObject *kwds2,
24419  PyObject *values[],
24420  Py_ssize_t num_pos_args,
24421  const char* function_name)
24422 {
24423  PyObject *key = 0, *value = 0;
24424  Py_ssize_t pos = 0;
24425  PyObject*** name;
24426  PyObject*** first_kw_arg = argnames + num_pos_args;
24427  while (PyDict_Next(kwds, &pos, &key, &value)) {
24428  name = first_kw_arg;
24429  while (*name && (**name != key)) name++;
24430  if (*name) {
24431  values[name-argnames] = value;
24432  continue;
24433  }
24434  name = first_kw_arg;
24435  #if PY_MAJOR_VERSION < 3
24436  if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) {
24437  while (*name) {
24438  if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
24439  && _PyString_Eq(**name, key)) {
24440  values[name-argnames] = value;
24441  break;
24442  }
24443  name++;
24444  }
24445  if (*name) continue;
24446  else {
24447  PyObject*** argname = argnames;
24448  while (argname != first_kw_arg) {
24449  if ((**argname == key) || (
24450  (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
24451  && _PyString_Eq(**argname, key))) {
24452  goto arg_passed_twice;
24453  }
24454  argname++;
24455  }
24456  }
24457  } else
24458  #endif
24459  if (likely(PyUnicode_Check(key))) {
24460  while (*name) {
24461  int cmp = (**name == key) ? 0 :
24462  #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
24463  (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
24464  #endif
24465  PyUnicode_Compare(**name, key);
24466  if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
24467  if (cmp == 0) {
24468  values[name-argnames] = value;
24469  break;
24470  }
24471  name++;
24472  }
24473  if (*name) continue;
24474  else {
24475  PyObject*** argname = argnames;
24476  while (argname != first_kw_arg) {
24477  int cmp = (**argname == key) ? 0 :
24478  #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
24479  (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
24480  #endif
24481  PyUnicode_Compare(**argname, key);
24482  if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
24483  if (cmp == 0) goto arg_passed_twice;
24484  argname++;
24485  }
24486  }
24487  } else
24488  goto invalid_keyword_type;
24489  if (kwds2) {
24490  if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
24491  } else {
24492  goto invalid_keyword;
24493  }
24494  }
24495  return 0;
24496 arg_passed_twice:
24497  __Pyx_RaiseDoubleKeywordsError(function_name, key);
24498  goto bad;
24499 invalid_keyword_type:
24500  PyErr_Format(PyExc_TypeError,
24501  "%.200s() keywords must be strings", function_name);
24502  goto bad;
24503 invalid_keyword:
24504  PyErr_Format(PyExc_TypeError,
24505  #if PY_MAJOR_VERSION < 3
24506  "%.200s() got an unexpected keyword argument '%.200s'",
24507  function_name, PyString_AsString(key));
24508  #else
24509  "%s() got an unexpected keyword argument '%U'",
24510  function_name, key);
24511  #endif
24512 bad:
24513  return -1;
24514 }
24515 
24516 /* ArgTypeTest */
24517 static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) {
24518  PyErr_Format(PyExc_TypeError,
24519  "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)",
24520  name, type->tp_name, Py_TYPE(obj)->tp_name);
24521 }
24522 static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
24523  const char *name, int exact)
24524 {
24525  if (unlikely(!type)) {
24526  PyErr_SetString(PyExc_SystemError, "Missing type object");
24527  return 0;
24528  }
24529  if (none_allowed && obj == Py_None) return 1;
24530  else if (exact) {
24531  if (likely(Py_TYPE(obj) == type)) return 1;
24532  #if PY_MAJOR_VERSION == 2
24533  else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1;
24534  #endif
24535  }
24536  else {
24537  if (likely(PyObject_TypeCheck(obj, type))) return 1;
24538  }
24539  __Pyx_RaiseArgumentTypeInvalid(name, obj, type);
24540  return 0;
24541 }
24542 
24543 /* BufferFormatCheck */
24544 static CYTHON_INLINE int __Pyx_IsLittleEndian(void) {
24545  unsigned int n = 1;
24546  return *(unsigned char*)(&n) != 0;
24547 }
24548 static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
24549  __Pyx_BufFmt_StackElem* stack,
24550  __Pyx_TypeInfo* type) {
24551  stack[0].field = &ctx->root;
24552  stack[0].parent_offset = 0;
24553  ctx->root.type = type;
24554  ctx->root.name = "buffer dtype";
24555  ctx->root.offset = 0;
24556  ctx->head = stack;
24557  ctx->head->field = &ctx->root;
24558  ctx->fmt_offset = 0;
24559  ctx->head->parent_offset = 0;
24560  ctx->new_packmode = '@';
24561  ctx->enc_packmode = '@';
24562  ctx->new_count = 1;
24563  ctx->enc_count = 0;
24564  ctx->enc_type = 0;
24565  ctx->is_complex = 0;
24566  ctx->is_valid_array = 0;
24567  ctx->struct_alignment = 0;
24568  while (type->typegroup == 'S') {
24569  ++ctx->head;
24570  ctx->head->field = type->fields;
24571  ctx->head->parent_offset = 0;
24572  type = type->fields->type;
24573  }
24574 }
24575 static int __Pyx_BufFmt_ParseNumber(const char** ts) {
24576  int count;
24577  const char* t = *ts;
24578  if (*t < '0' || *t > '9') {
24579  return -1;
24580  } else {
24581  count = *t++ - '0';
24582  while (*t >= '0' && *t < '9') {
24583  count *= 10;
24584  count += *t++ - '0';
24585  }
24586  }
24587  *ts = t;
24588  return count;
24589 }
24590 static int __Pyx_BufFmt_ExpectNumber(const char **ts) {
24591  int number = __Pyx_BufFmt_ParseNumber(ts);
24592  if (number == -1)
24593  PyErr_Format(PyExc_ValueError,\
24594  "Does not understand character buffer dtype format string ('%c')", **ts);
24595  return number;
24596 }
24597 static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) {
24598  PyErr_Format(PyExc_ValueError,
24599  "Unexpected format string character: '%c'", ch);
24600 }
24601 static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) {
24602  switch (ch) {
24603  case 'c': return "'char'";
24604  case 'b': return "'signed char'";
24605  case 'B': return "'unsigned char'";
24606  case 'h': return "'short'";
24607  case 'H': return "'unsigned short'";
24608  case 'i': return "'int'";
24609  case 'I': return "'unsigned int'";
24610  case 'l': return "'long'";
24611  case 'L': return "'unsigned long'";
24612  case 'q': return "'long long'";
24613  case 'Q': return "'unsigned long long'";
24614  case 'f': return (is_complex ? "'complex float'" : "'float'");
24615  case 'd': return (is_complex ? "'complex double'" : "'double'");
24616  case 'g': return (is_complex ? "'complex long double'" : "'long double'");
24617  case 'T': return "a struct";
24618  case 'O': return "Python object";
24619  case 'P': return "a pointer";
24620  case 's': case 'p': return "a string";
24621  case 0: return "end";
24622  default: return "unparseable format string";
24623  }
24624 }
24625 static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) {
24626  switch (ch) {
24627  case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
24628  case 'h': case 'H': return 2;
24629  case 'i': case 'I': case 'l': case 'L': return 4;
24630  case 'q': case 'Q': return 8;
24631  case 'f': return (is_complex ? 8 : 4);
24632  case 'd': return (is_complex ? 16 : 8);
24633  case 'g': {
24634  PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g')..");
24635  return 0;
24636  }
24637  case 'O': case 'P': return sizeof(void*);
24638  default:
24639  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
24640  return 0;
24641  }
24642 }
24643 static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) {
24644  switch (ch) {
24645  case 'c': case 'b': case 'B': case 's': case 'p': return 1;
24646  case 'h': case 'H': return sizeof(short);
24647  case 'i': case 'I': return sizeof(int);
24648  case 'l': case 'L': return sizeof(long);
24649  #ifdef HAVE_LONG_LONG
24650  case 'q': case 'Q': return sizeof(PY_LONG_LONG);
24651  #endif
24652  case 'f': return sizeof(float) * (is_complex ? 2 : 1);
24653  case 'd': return sizeof(double) * (is_complex ? 2 : 1);
24654  case 'g': return sizeof(long double) * (is_complex ? 2 : 1);
24655  case 'O': case 'P': return sizeof(void*);
24656  default: {
24657  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
24658  return 0;
24659  }
24660  }
24661 }
24662 typedef struct { char c; short x; } __Pyx_st_short;
24663 typedef struct { char c; int x; } __Pyx_st_int;
24664 typedef struct { char c; long x; } __Pyx_st_long;
24665 typedef struct { char c; float x; } __Pyx_st_float;
24666 typedef struct { char c; double x; } __Pyx_st_double;
24667 typedef struct { char c; long double x; } __Pyx_st_longdouble;
24668 typedef struct { char c; void *x; } __Pyx_st_void_p;
24669 #ifdef HAVE_LONG_LONG
24670 typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong;
24671 #endif
24672 static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) {
24673  switch (ch) {
24674  case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
24675  case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short);
24676  case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int);
24677  case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long);
24678 #ifdef HAVE_LONG_LONG
24679  case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG);
24680 #endif
24681  case 'f': return sizeof(__Pyx_st_float) - sizeof(float);
24682  case 'd': return sizeof(__Pyx_st_double) - sizeof(double);
24683  case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double);
24684  case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*);
24685  default:
24686  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
24687  return 0;
24688  }
24689 }
24690 /* These are for computing the padding at the end of the struct to align
24691  on the first member of the struct. This will probably the same as above,
24692  but we don't have any guarantees.
24693  */
24694 typedef struct { short x; char c; } __Pyx_pad_short;
24695 typedef struct { int x; char c; } __Pyx_pad_int;
24696 typedef struct { long x; char c; } __Pyx_pad_long;
24697 typedef struct { float x; char c; } __Pyx_pad_float;
24698 typedef struct { double x; char c; } __Pyx_pad_double;
24699 typedef struct { long double x; char c; } __Pyx_pad_longdouble;
24700 typedef struct { void *x; char c; } __Pyx_pad_void_p;
24701 #ifdef HAVE_LONG_LONG
24702 typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong;
24703 #endif
24704 static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) {
24705  switch (ch) {
24706  case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
24707  case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short);
24708  case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int);
24709  case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long);
24710 #ifdef HAVE_LONG_LONG
24711  case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG);
24712 #endif
24713  case 'f': return sizeof(__Pyx_pad_float) - sizeof(float);
24714  case 'd': return sizeof(__Pyx_pad_double) - sizeof(double);
24715  case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double);
24716  case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*);
24717  default:
24718  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
24719  return 0;
24720  }
24721 }
24722 static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) {
24723  switch (ch) {
24724  case 'c':
24725  return 'H';
24726  case 'b': case 'h': case 'i':
24727  case 'l': case 'q': case 's': case 'p':
24728  return 'I';
24729  case 'B': case 'H': case 'I': case 'L': case 'Q':
24730  return 'U';
24731  case 'f': case 'd': case 'g':
24732  return (is_complex ? 'C' : 'R');
24733  case 'O':
24734  return 'O';
24735  case 'P':
24736  return 'P';
24737  default: {
24738  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
24739  return 0;
24740  }
24741  }
24742 }
24743 static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) {
24744  if (ctx->head == NULL || ctx->head->field == &ctx->root) {
24745  const char* expected;
24746  const char* quote;
24747  if (ctx->head == NULL) {
24748  expected = "end";
24749  quote = "";
24750  } else {
24751  expected = ctx->head->field->type->name;
24752  quote = "'";
24753  }
24754  PyErr_Format(PyExc_ValueError,
24755  "Buffer dtype mismatch, expected %s%s%s but got %s",
24756  quote, expected, quote,
24757  __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex));
24758  } else {
24759  __Pyx_StructField* field = ctx->head->field;
24760  __Pyx_StructField* parent = (ctx->head - 1)->field;
24761  PyErr_Format(PyExc_ValueError,
24762  "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'",
24763  field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex),
24764  parent->type->name, field->name);
24765  }
24766 }
24767 static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) {
24768  char group;
24769  size_t size, offset, arraysize = 1;
24770  if (ctx->enc_type == 0) return 0;
24771  if (ctx->head->field->type->arraysize[0]) {
24772  int i, ndim = 0;
24773  if (ctx->enc_type == 's' || ctx->enc_type == 'p') {
24774  ctx->is_valid_array = ctx->head->field->type->ndim == 1;
24775  ndim = 1;
24776  if (ctx->enc_count != ctx->head->field->type->arraysize[0]) {
24777  PyErr_Format(PyExc_ValueError,
24778  "Expected a dimension of size %zu, got %zu",
24779  ctx->head->field->type->arraysize[0], ctx->enc_count);
24780  return -1;
24781  }
24782  }
24783  if (!ctx->is_valid_array) {
24784  PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d",
24785  ctx->head->field->type->ndim, ndim);
24786  return -1;
24787  }
24788  for (i = 0; i < ctx->head->field->type->ndim; i++) {
24789  arraysize *= ctx->head->field->type->arraysize[i];
24790  }
24791  ctx->is_valid_array = 0;
24792  ctx->enc_count = 1;
24793  }
24794  group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex);
24795  do {
24796  __Pyx_StructField* field = ctx->head->field;
24797  __Pyx_TypeInfo* type = field->type;
24798  if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') {
24799  size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex);
24800  } else {
24801  size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex);
24802  }
24803  if (ctx->enc_packmode == '@') {
24804  size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex);
24805  size_t align_mod_offset;
24806  if (align_at == 0) return -1;
24807  align_mod_offset = ctx->fmt_offset % align_at;
24808  if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset;
24809  if (ctx->struct_alignment == 0)
24810  ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type,
24811  ctx->is_complex);
24812  }
24813  if (type->size != size || type->typegroup != group) {
24814  if (type->typegroup == 'C' && type->fields != NULL) {
24815  size_t parent_offset = ctx->head->parent_offset + field->offset;
24816  ++ctx->head;
24817  ctx->head->field = type->fields;
24818  ctx->head->parent_offset = parent_offset;
24819  continue;
24820  }
24821  if ((type->typegroup == 'H' || group == 'H') && type->size == size) {
24822  } else {
24823  __Pyx_BufFmt_RaiseExpected(ctx);
24824  return -1;
24825  }
24826  }
24827  offset = ctx->head->parent_offset + field->offset;
24828  if (ctx->fmt_offset != offset) {
24829  PyErr_Format(PyExc_ValueError,
24830  "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected",
24831  (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset);
24832  return -1;
24833  }
24834  ctx->fmt_offset += size;
24835  if (arraysize)
24836  ctx->fmt_offset += (arraysize - 1) * size;
24837  --ctx->enc_count;
24838  while (1) {
24839  if (field == &ctx->root) {
24840  ctx->head = NULL;
24841  if (ctx->enc_count != 0) {
24842  __Pyx_BufFmt_RaiseExpected(ctx);
24843  return -1;
24844  }
24845  break;
24846  }
24847  ctx->head->field = ++field;
24848  if (field->type == NULL) {
24849  --ctx->head;
24850  field = ctx->head->field;
24851  continue;
24852  } else if (field->type->typegroup == 'S') {
24853  size_t parent_offset = ctx->head->parent_offset + field->offset;
24854  if (field->type->fields->type == NULL) continue;
24855  field = field->type->fields;
24856  ++ctx->head;
24857  ctx->head->field = field;
24858  ctx->head->parent_offset = parent_offset;
24859  break;
24860  } else {
24861  break;
24862  }
24863  }
24864  } while (ctx->enc_count);
24865  ctx->enc_type = 0;
24866  ctx->is_complex = 0;
24867  return 0;
24868 }
24869 static CYTHON_INLINE PyObject *
24870 __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp)
24871 {
24872  const char *ts = *tsp;
24873  int i = 0, number;
24874  int ndim = ctx->head->field->type->ndim;
24875 ;
24876  ++ts;
24877  if (ctx->new_count != 1) {
24878  PyErr_SetString(PyExc_ValueError,
24879  "Cannot handle repeated arrays in format string");
24880  return NULL;
24881  }
24882  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
24883  while (*ts && *ts != ')') {
24884  switch (*ts) {
24885  case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue;
24886  default: break;
24887  }
24888  number = __Pyx_BufFmt_ExpectNumber(&ts);
24889  if (number == -1) return NULL;
24890  if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i])
24891  return PyErr_Format(PyExc_ValueError,
24892  "Expected a dimension of size %zu, got %d",
24893  ctx->head->field->type->arraysize[i], number);
24894  if (*ts != ',' && *ts != ')')
24895  return PyErr_Format(PyExc_ValueError,
24896  "Expected a comma in format string, got '%c'", *ts);
24897  if (*ts == ',') ts++;
24898  i++;
24899  }
24900  if (i != ndim)
24901  return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d",
24902  ctx->head->field->type->ndim, i);
24903  if (!*ts) {
24904  PyErr_SetString(PyExc_ValueError,
24905  "Unexpected end of format string, expected ')'");
24906  return NULL;
24907  }
24908  ctx->is_valid_array = 1;
24909  ctx->new_count = 1;
24910  *tsp = ++ts;
24911  return Py_None;
24912 }
24913 static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) {
24914  int got_Z = 0;
24915  while (1) {
24916  switch(*ts) {
24917  case 0:
24918  if (ctx->enc_type != 0 && ctx->head == NULL) {
24919  __Pyx_BufFmt_RaiseExpected(ctx);
24920  return NULL;
24921  }
24922  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
24923  if (ctx->head != NULL) {
24924  __Pyx_BufFmt_RaiseExpected(ctx);
24925  return NULL;
24926  }
24927  return ts;
24928  case ' ':
24929  case '\r':
24930  case '\n':
24931  ++ts;
24932  break;
24933  case '<':
24934  if (!__Pyx_IsLittleEndian()) {
24935  PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler");
24936  return NULL;
24937  }
24938  ctx->new_packmode = '=';
24939  ++ts;
24940  break;
24941  case '>':
24942  case '!':
24943  if (__Pyx_IsLittleEndian()) {
24944  PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler");
24945  return NULL;
24946  }
24947  ctx->new_packmode = '=';
24948  ++ts;
24949  break;
24950  case '=':
24951  case '@':
24952  case '^':
24953  ctx->new_packmode = *ts++;
24954  break;
24955  case 'T':
24956  {
24957  const char* ts_after_sub;
24958  size_t i, struct_count = ctx->new_count;
24959  size_t struct_alignment = ctx->struct_alignment;
24960  ctx->new_count = 1;
24961  ++ts;
24962  if (*ts != '{') {
24963  PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'");
24964  return NULL;
24965  }
24966  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
24967  ctx->enc_type = 0;
24968  ctx->enc_count = 0;
24969  ctx->struct_alignment = 0;
24970  ++ts;
24971  ts_after_sub = ts;
24972  for (i = 0; i != struct_count; ++i) {
24973  ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts);
24974  if (!ts_after_sub) return NULL;
24975  }
24976  ts = ts_after_sub;
24977  if (struct_alignment) ctx->struct_alignment = struct_alignment;
24978  }
24979  break;
24980  case '}':
24981  {
24982  size_t alignment = ctx->struct_alignment;
24983  ++ts;
24984  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
24985  ctx->enc_type = 0;
24986  if (alignment && ctx->fmt_offset % alignment) {
24987  ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment);
24988  }
24989  }
24990  return ts;
24991  case 'x':
24992  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
24993  ctx->fmt_offset += ctx->new_count;
24994  ctx->new_count = 1;
24995  ctx->enc_count = 0;
24996  ctx->enc_type = 0;
24997  ctx->enc_packmode = ctx->new_packmode;
24998  ++ts;
24999  break;
25000  case 'Z':
25001  got_Z = 1;
25002  ++ts;
25003  if (*ts != 'f' && *ts != 'd' && *ts != 'g') {
25004  __Pyx_BufFmt_RaiseUnexpectedChar('Z');
25005  return NULL;
25006  }
25007  case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I':
25008  case 'l': case 'L': case 'q': case 'Q':
25009  case 'f': case 'd': case 'g':
25010  case 'O': case 'p':
25011  if (ctx->enc_type == *ts && got_Z == ctx->is_complex &&
25012  ctx->enc_packmode == ctx->new_packmode) {
25013  ctx->enc_count += ctx->new_count;
25014  ctx->new_count = 1;
25015  got_Z = 0;
25016  ++ts;
25017  break;
25018  }
25019  case 's':
25020  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
25021  ctx->enc_count = ctx->new_count;
25022  ctx->enc_packmode = ctx->new_packmode;
25023  ctx->enc_type = *ts;
25024  ctx->is_complex = got_Z;
25025  ++ts;
25026  ctx->new_count = 1;
25027  got_Z = 0;
25028  break;
25029  case ':':
25030  ++ts;
25031  while(*ts != ':') ++ts;
25032  ++ts;
25033  break;
25034  case '(':
25035  if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL;
25036  break;
25037  default:
25038  {
25039  int number = __Pyx_BufFmt_ExpectNumber(&ts);
25040  if (number == -1) return NULL;
25041  ctx->new_count = (size_t)number;
25042  }
25043  }
25044  }
25045 }
25046 static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) {
25047  buf->buf = NULL;
25048  buf->obj = NULL;
25049  buf->strides = __Pyx_zeros;
25050  buf->shape = __Pyx_zeros;
25051  buf->suboffsets = __Pyx_minusones;
25052 }
25053 static CYTHON_INLINE int __Pyx_GetBufferAndValidate(
25054  Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags,
25055  int nd, int cast, __Pyx_BufFmt_StackElem* stack)
25056 {
25057  if (obj == Py_None || obj == NULL) {
25058  __Pyx_ZeroBuffer(buf);
25059  return 0;
25060  }
25061  buf->buf = NULL;
25062  if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail;
25063  if (buf->ndim != nd) {
25064  PyErr_Format(PyExc_ValueError,
25065  "Buffer has wrong number of dimensions (expected %d, got %d)",
25066  nd, buf->ndim);
25067  goto fail;
25068  }
25069  if (!cast) {
25070  __Pyx_BufFmt_Context ctx;
25071  __Pyx_BufFmt_Init(&ctx, stack, dtype);
25072  if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
25073  }
25074  if ((unsigned)buf->itemsize != dtype->size) {
25075  PyErr_Format(PyExc_ValueError,
25076  "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)",
25077  buf->itemsize, (buf->itemsize > 1) ? "s" : "",
25078  dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : "");
25079  goto fail;
25080  }
25081  if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones;
25082  return 0;
25083 fail:;
25084  __Pyx_ZeroBuffer(buf);
25085  return -1;
25086 }
25087 static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) {
25088  if (info->buf == NULL) return;
25089  if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL;
25090  __Pyx_ReleaseBuffer(info);
25091 }
25092 
25093 /* BufferIndexError */
25094  static void __Pyx_RaiseBufferIndexError(int axis) {
25095  PyErr_Format(PyExc_IndexError,
25096  "Out of bounds on buffer access (axis %d)", axis);
25097 }
25098 
25099 /* PyErrFetchRestore */
25100  #if CYTHON_FAST_THREAD_STATE
25101 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
25102  PyObject *tmp_type, *tmp_value, *tmp_tb;
25103  tmp_type = tstate->curexc_type;
25104  tmp_value = tstate->curexc_value;
25105  tmp_tb = tstate->curexc_traceback;
25106  tstate->curexc_type = type;
25107  tstate->curexc_value = value;
25108  tstate->curexc_traceback = tb;
25109  Py_XDECREF(tmp_type);
25110  Py_XDECREF(tmp_value);
25111  Py_XDECREF(tmp_tb);
25112 }
25113 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
25114  *type = tstate->curexc_type;
25115  *value = tstate->curexc_value;
25116  *tb = tstate->curexc_traceback;
25117  tstate->curexc_type = 0;
25118  tstate->curexc_value = 0;
25119  tstate->curexc_traceback = 0;
25120 }
25121 #endif
25122 
25123 /* PyFloatBinop */
25124  #if !CYTHON_COMPILING_IN_PYPY
25125 static PyObject* __Pyx_PyFloat_AddObjC(PyObject *op1, PyObject *op2, double floatval, CYTHON_UNUSED int inplace) {
25126  const double b = floatval;
25127  double a, result;
25128  if (likely(PyFloat_CheckExact(op1))) {
25129  a = PyFloat_AS_DOUBLE(op1);
25130  } else
25131  #if PY_MAJOR_VERSION < 3
25132  if (likely(PyInt_CheckExact(op1))) {
25133  a = (double) PyInt_AS_LONG(op1);
25134  } else
25135  #endif
25136  if (likely(PyLong_CheckExact(op1))) {
25137  #if CYTHON_USE_PYLONG_INTERNALS
25138  const digit* digits = ((PyLongObject*)op1)->ob_digit;
25139  const Py_ssize_t size = Py_SIZE(op1);
25140  switch (size) {
25141  case 0: a = 0.0; break;
25142  case -1: a = -(double) digits[0]; break;
25143  case 1: a = (double) digits[0]; break;
25144  case -2:
25145  case 2:
25146  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT && ((8 * sizeof(unsigned long) < 53) || (1 * PyLong_SHIFT < 53))) {
25147  a = (double) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
25148  if ((8 * sizeof(unsigned long) < 53) || (2 * PyLong_SHIFT < 53) || (a < (double) (1L<<53))) {
25149  if (size == -2)
25150  a = -a;
25151  break;
25152  }
25153  }
25154  case -3:
25155  case 3:
25156  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT && ((8 * sizeof(unsigned long) < 53) || (2 * PyLong_SHIFT < 53))) {
25157  a = (double) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
25158  if ((8 * sizeof(unsigned long) < 53) || (3 * PyLong_SHIFT < 53) || (a < (double) (1L<<53))) {
25159  if (size == -3)
25160  a = -a;
25161  break;
25162  }
25163  }
25164  case -4:
25165  case 4:
25166  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT && ((8 * sizeof(unsigned long) < 53) || (3 * PyLong_SHIFT < 53))) {
25167  a = (double) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
25168  if ((8 * sizeof(unsigned long) < 53) || (4 * PyLong_SHIFT < 53) || (a < (double) (1L<<53))) {
25169  if (size == -4)
25170  a = -a;
25171  break;
25172  }
25173  }
25174  default:
25175  #else
25176  {
25177  #endif
25178  a = PyLong_AsDouble(op1);
25179  if (unlikely(a == -1.0 && PyErr_Occurred())) return NULL;
25180  }
25181  } else {
25182  return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2);
25183  }
25184  PyFPE_START_PROTECT("add", return NULL)
25185  result = a + b;
25186  PyFPE_END_PROTECT(result)
25187  return PyFloat_FromDouble(result);
25188 }
25189 #endif
25190 
25191 /* PyFunctionFastCall */
25192  #if CYTHON_FAST_PYCALL
25193 #include "frameobject.h"
25194 static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na,
25195  PyObject *globals) {
25196  PyFrameObject *f;
25197  PyThreadState *tstate = PyThreadState_GET();
25198  PyObject **fastlocals;
25199  Py_ssize_t i;
25200  PyObject *result;
25201  assert(globals != NULL);
25202  /* XXX Perhaps we should create a specialized
25203  PyFrame_New() that doesn't take locals, but does
25204  take builtins without sanity checking them.
25205  */
25206  assert(tstate != NULL);
25207  f = PyFrame_New(tstate, co, globals, NULL);
25208  if (f == NULL) {
25209  return NULL;
25210  }
25211  fastlocals = f->f_localsplus;
25212  for (i = 0; i < na; i++) {
25213  Py_INCREF(*args);
25214  fastlocals[i] = *args++;
25215  }
25216  result = PyEval_EvalFrameEx(f,0);
25217  ++tstate->recursion_depth;
25218  Py_DECREF(f);
25219  --tstate->recursion_depth;
25220  return result;
25221 }
25222 #if 1 || PY_VERSION_HEX < 0x030600B1
25223 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) {
25224  PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func);
25225  PyObject *globals = PyFunction_GET_GLOBALS(func);
25226  PyObject *argdefs = PyFunction_GET_DEFAULTS(func);
25227  PyObject *closure;
25228 #if PY_MAJOR_VERSION >= 3
25229  PyObject *kwdefs;
25230 #endif
25231  PyObject *kwtuple, **k;
25232  PyObject **d;
25233  Py_ssize_t nd;
25234  Py_ssize_t nk;
25235  PyObject *result;
25236  assert(kwargs == NULL || PyDict_Check(kwargs));
25237  nk = kwargs ? PyDict_Size(kwargs) : 0;
25238  if (Py_EnterRecursiveCall((char*)" while calling a Python object")) {
25239  return NULL;
25240  }
25241  if (
25242 #if PY_MAJOR_VERSION >= 3
25243  co->co_kwonlyargcount == 0 &&
25244 #endif
25245  likely(kwargs == NULL || nk == 0) &&
25246  co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) {
25247  if (argdefs == NULL && co->co_argcount == nargs) {
25248  result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals);
25249  goto done;
25250  }
25251  else if (nargs == 0 && argdefs != NULL
25252  && co->co_argcount == Py_SIZE(argdefs)) {
25253  /* function called with no arguments, but all parameters have
25254  a default value: use default values as arguments .*/
25255  args = &PyTuple_GET_ITEM(argdefs, 0);
25256  result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals);
25257  goto done;
25258  }
25259  }
25260  if (kwargs != NULL) {
25261  Py_ssize_t pos, i;
25262  kwtuple = PyTuple_New(2 * nk);
25263  if (kwtuple == NULL) {
25264  result = NULL;
25265  goto done;
25266  }
25267  k = &PyTuple_GET_ITEM(kwtuple, 0);
25268  pos = i = 0;
25269  while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) {
25270  Py_INCREF(k[i]);
25271  Py_INCREF(k[i+1]);
25272  i += 2;
25273  }
25274  nk = i / 2;
25275  }
25276  else {
25277  kwtuple = NULL;
25278  k = NULL;
25279  }
25280  closure = PyFunction_GET_CLOSURE(func);
25281 #if PY_MAJOR_VERSION >= 3
25282  kwdefs = PyFunction_GET_KW_DEFAULTS(func);
25283 #endif
25284  if (argdefs != NULL) {
25285  d = &PyTuple_GET_ITEM(argdefs, 0);
25286  nd = Py_SIZE(argdefs);
25287  }
25288  else {
25289  d = NULL;
25290  nd = 0;
25291  }
25292 #if PY_MAJOR_VERSION >= 3
25293  result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL,
25294  args, nargs,
25295  k, (int)nk,
25296  d, (int)nd, kwdefs, closure);
25297 #else
25298  result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL,
25299  args, nargs,
25300  k, (int)nk,
25301  d, (int)nd, closure);
25302 #endif
25303  Py_XDECREF(kwtuple);
25304 done:
25305  Py_LeaveRecursiveCall();
25306  return result;
25307 }
25308 #endif // CPython < 3.6
25309 #endif // CYTHON_FAST_PYCALL
25310 
25311 /* PyCFunctionFastCall */
25312  #if CYTHON_FAST_PYCCALL
25313 static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) {
25314  PyCFunctionObject *func = (PyCFunctionObject*)func_obj;
25315  PyCFunction meth = PyCFunction_GET_FUNCTION(func);
25316  PyObject *self = PyCFunction_GET_SELF(func);
25317  assert(PyCFunction_Check(func));
25318  assert(METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST)));
25319  assert(nargs >= 0);
25320  assert(nargs == 0 || args != NULL);
25321  /* _PyCFunction_FastCallDict() must not be called with an exception set,
25322  because it may clear it (directly or indirectly) and so the
25323  caller loses its exception */
25324  assert(!PyErr_Occurred());
25325  return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
25326 }
25327 #endif // CYTHON_FAST_PYCCALL
25328 
25329 /* PyObjectCall */
25330  #if CYTHON_COMPILING_IN_CPYTHON
25331 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
25332  PyObject *result;
25333  ternaryfunc call = func->ob_type->tp_call;
25334  if (unlikely(!call))
25335  return PyObject_Call(func, arg, kw);
25336  if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
25337  return NULL;
25338  result = (*call)(func, arg, kw);
25339  Py_LeaveRecursiveCall();
25340  if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
25341  PyErr_SetString(
25342  PyExc_SystemError,
25343  "NULL result without error in PyObject_Call");
25344  }
25345  return result;
25346 }
25347 #endif
25348 
25349 /* GetModuleGlobalName */
25350  static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) {
25351  PyObject *result;
25352 #if !CYTHON_AVOID_BORROWED_REFS
25353  result = PyDict_GetItem(__pyx_d, name);
25354  if (likely(result)) {
25355  Py_INCREF(result);
25356  } else {
25357 #else
25358  result = PyObject_GetItem(__pyx_d, name);
25359  if (!result) {
25360  PyErr_Clear();
25361 #endif
25362  result = __Pyx_GetBuiltinName(name);
25363  }
25364  return result;
25365 }
25366 
25367 /* ExtTypeTest */
25368  static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
25369  if (unlikely(!type)) {
25370  PyErr_SetString(PyExc_SystemError, "Missing type object");
25371  return 0;
25372  }
25373  if (likely(PyObject_TypeCheck(obj, type)))
25374  return 1;
25375  PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
25376  Py_TYPE(obj)->tp_name, type->tp_name);
25377  return 0;
25378 }
25379 
25380 /* GetItemInt */
25381  static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
25382  PyObject *r;
25383  if (!j) return NULL;
25384  r = PyObject_GetItem(o, j);
25385  Py_DECREF(j);
25386  return r;
25387 }
25388 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
25389  CYTHON_NCP_UNUSED int wraparound,
25390  CYTHON_NCP_UNUSED int boundscheck) {
25391 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
25392  if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o);
25393  if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) {
25394  PyObject *r = PyList_GET_ITEM(o, i);
25395  Py_INCREF(r);
25396  return r;
25397  }
25398  return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
25399 #else
25400  return PySequence_GetItem(o, i);
25401 #endif
25402 }
25403 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
25404  CYTHON_NCP_UNUSED int wraparound,
25405  CYTHON_NCP_UNUSED int boundscheck) {
25406 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
25407  if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o);
25408  if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) {
25409  PyObject *r = PyTuple_GET_ITEM(o, i);
25410  Py_INCREF(r);
25411  return r;
25412  }
25413  return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
25414 #else
25415  return PySequence_GetItem(o, i);
25416 #endif
25417 }
25418 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list,
25419  CYTHON_NCP_UNUSED int wraparound,
25420  CYTHON_NCP_UNUSED int boundscheck) {
25421 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
25422  if (is_list || PyList_CheckExact(o)) {
25423  Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
25424  if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) {
25425  PyObject *r = PyList_GET_ITEM(o, n);
25426  Py_INCREF(r);
25427  return r;
25428  }
25429  }
25430  else if (PyTuple_CheckExact(o)) {
25431  Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
25432  if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) {
25433  PyObject *r = PyTuple_GET_ITEM(o, n);
25434  Py_INCREF(r);
25435  return r;
25436  }
25437  } else {
25438  PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
25439  if (likely(m && m->sq_item)) {
25440  if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
25441  Py_ssize_t l = m->sq_length(o);
25442  if (likely(l >= 0)) {
25443  i += l;
25444  } else {
25445  if (!PyErr_ExceptionMatches(PyExc_OverflowError))
25446  return NULL;
25447  PyErr_Clear();
25448  }
25449  }
25450  return m->sq_item(o, i);
25451  }
25452  }
25453 #else
25454  if (is_list || PySequence_Check(o)) {
25455  return PySequence_GetItem(o, i);
25456  }
25457 #endif
25458  return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
25459 }
25460 
25461 /* PyObjectCallMethO */
25462  #if CYTHON_COMPILING_IN_CPYTHON
25463 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
25464  PyObject *self, *result;
25465  PyCFunction cfunc;
25466  cfunc = PyCFunction_GET_FUNCTION(func);
25467  self = PyCFunction_GET_SELF(func);
25468  if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
25469  return NULL;
25470  result = cfunc(self, arg);
25471  Py_LeaveRecursiveCall();
25472  if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
25473  PyErr_SetString(
25474  PyExc_SystemError,
25475  "NULL result without error in PyObject_Call");
25476  }
25477  return result;
25478 }
25479 #endif
25480 
25481 /* PyObjectCallOneArg */
25482  #if CYTHON_COMPILING_IN_CPYTHON
25483 static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
25484  PyObject *result;
25485  PyObject *args = PyTuple_New(1);
25486  if (unlikely(!args)) return NULL;
25487  Py_INCREF(arg);
25488  PyTuple_SET_ITEM(args, 0, arg);
25489  result = __Pyx_PyObject_Call(func, args, NULL);
25490  Py_DECREF(args);
25491  return result;
25492 }
25493 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
25494 #if CYTHON_FAST_PYCALL
25495  if (PyFunction_Check(func)) {
25496  return __Pyx_PyFunction_FastCall(func, &arg, 1);
25497  }
25498 #endif
25499 #ifdef __Pyx_CyFunction_USED
25500  if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) {
25501 #else
25502  if (likely(PyCFunction_Check(func))) {
25503 #endif
25504  if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
25505  return __Pyx_PyObject_CallMethO(func, arg);
25506 #if CYTHON_FAST_PYCCALL
25507  } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) {
25508  return __Pyx_PyCFunction_FastCall(func, &arg, 1);
25509 #endif
25510  }
25511  }
25512  return __Pyx__PyObject_CallOneArg(func, arg);
25513 }
25514 #else
25515 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
25516  PyObject *result;
25517  PyObject *args = PyTuple_Pack(1, arg);
25518  if (unlikely(!args)) return NULL;
25519  result = __Pyx_PyObject_Call(func, args, NULL);
25520  Py_DECREF(args);
25521  return result;
25522 }
25523 #endif
25524 
25525 /* pyobject_as_double */
25526  static double __Pyx__PyObject_AsDouble(PyObject* obj) {
25527  PyObject* float_value;
25528 #if !CYTHON_USE_TYPE_SLOTS
25529  float_value = PyNumber_Float(obj); if (0) goto bad;
25530 #else
25531  PyNumberMethods *nb = Py_TYPE(obj)->tp_as_number;
25532  if (likely(nb) && likely(nb->nb_float)) {
25533  float_value = nb->nb_float(obj);
25534  if (likely(float_value) && unlikely(!PyFloat_Check(float_value))) {
25535  PyErr_Format(PyExc_TypeError,
25536  "__float__ returned non-float (type %.200s)",
25537  Py_TYPE(float_value)->tp_name);
25538  Py_DECREF(float_value);
25539  goto bad;
25540  }
25541  } else if (PyUnicode_CheckExact(obj) || PyBytes_CheckExact(obj)) {
25542 #if PY_MAJOR_VERSION >= 3
25543  float_value = PyFloat_FromString(obj);
25544 #else
25545  float_value = PyFloat_FromString(obj, 0);
25546 #endif
25547  } else {
25548  PyObject* args = PyTuple_New(1);
25549  if (unlikely(!args)) goto bad;
25550  PyTuple_SET_ITEM(args, 0, obj);
25551  float_value = PyObject_Call((PyObject*)&PyFloat_Type, args, 0);
25552  PyTuple_SET_ITEM(args, 0, 0);
25553  Py_DECREF(args);
25554  }
25555 #endif
25556  if (likely(float_value)) {
25557  double value = PyFloat_AS_DOUBLE(float_value);
25558  Py_DECREF(float_value);
25559  return value;
25560  }
25561 bad:
25562  return (double)-1;
25563 }
25564 
25565 /* RaiseException */
25566  #if PY_MAJOR_VERSION < 3
25567 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
25568  CYTHON_UNUSED PyObject *cause) {
25569  __Pyx_PyThreadState_declare
25570  Py_XINCREF(type);
25571  if (!value || value == Py_None)
25572  value = NULL;
25573  else
25574  Py_INCREF(value);
25575  if (!tb || tb == Py_None)
25576  tb = NULL;
25577  else {
25578  Py_INCREF(tb);
25579  if (!PyTraceBack_Check(tb)) {
25580  PyErr_SetString(PyExc_TypeError,
25581  "raise: arg 3 must be a traceback or None");
25582  goto raise_error;
25583  }
25584  }
25585  if (PyType_Check(type)) {
25586 #if CYTHON_COMPILING_IN_PYPY
25587  if (!value) {
25588  Py_INCREF(Py_None);
25589  value = Py_None;
25590  }
25591 #endif
25592  PyErr_NormalizeException(&type, &value, &tb);
25593  } else {
25594  if (value) {
25595  PyErr_SetString(PyExc_TypeError,
25596  "instance exception may not have a separate value");
25597  goto raise_error;
25598  }
25599  value = type;
25600  type = (PyObject*) Py_TYPE(type);
25601  Py_INCREF(type);
25602  if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
25603  PyErr_SetString(PyExc_TypeError,
25604  "raise: exception class must be a subclass of BaseException");
25605  goto raise_error;
25606  }
25607  }
25608  __Pyx_PyThreadState_assign
25609  __Pyx_ErrRestore(type, value, tb);
25610  return;
25611 raise_error:
25612  Py_XDECREF(value);
25613  Py_XDECREF(type);
25614  Py_XDECREF(tb);
25615  return;
25616 }
25617 #else
25618 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
25619  PyObject* owned_instance = NULL;
25620  if (tb == Py_None) {
25621  tb = 0;
25622  } else if (tb && !PyTraceBack_Check(tb)) {
25623  PyErr_SetString(PyExc_TypeError,
25624  "raise: arg 3 must be a traceback or None");
25625  goto bad;
25626  }
25627  if (value == Py_None)
25628  value = 0;
25629  if (PyExceptionInstance_Check(type)) {
25630  if (value) {
25631  PyErr_SetString(PyExc_TypeError,
25632  "instance exception may not have a separate value");
25633  goto bad;
25634  }
25635  value = type;
25636  type = (PyObject*) Py_TYPE(value);
25637  } else if (PyExceptionClass_Check(type)) {
25638  PyObject *instance_class = NULL;
25639  if (value && PyExceptionInstance_Check(value)) {
25640  instance_class = (PyObject*) Py_TYPE(value);
25641  if (instance_class != type) {
25642  int is_subclass = PyObject_IsSubclass(instance_class, type);
25643  if (!is_subclass) {
25644  instance_class = NULL;
25645  } else if (unlikely(is_subclass == -1)) {
25646  goto bad;
25647  } else {
25648  type = instance_class;
25649  }
25650  }
25651  }
25652  if (!instance_class) {
25653  PyObject *args;
25654  if (!value)
25655  args = PyTuple_New(0);
25656  else if (PyTuple_Check(value)) {
25657  Py_INCREF(value);
25658  args = value;
25659  } else
25660  args = PyTuple_Pack(1, value);
25661  if (!args)
25662  goto bad;
25663  owned_instance = PyObject_Call(type, args, NULL);
25664  Py_DECREF(args);
25665  if (!owned_instance)
25666  goto bad;
25667  value = owned_instance;
25668  if (!PyExceptionInstance_Check(value)) {
25669  PyErr_Format(PyExc_TypeError,
25670  "calling %R should have returned an instance of "
25671  "BaseException, not %R",
25672  type, Py_TYPE(value));
25673  goto bad;
25674  }
25675  }
25676  } else {
25677  PyErr_SetString(PyExc_TypeError,
25678  "raise: exception class must be a subclass of BaseException");
25679  goto bad;
25680  }
25681 #if PY_VERSION_HEX >= 0x03030000
25682  if (cause) {
25683 #else
25684  if (cause && cause != Py_None) {
25685 #endif
25686  PyObject *fixed_cause;
25687  if (cause == Py_None) {
25688  fixed_cause = NULL;
25689  } else if (PyExceptionClass_Check(cause)) {
25690  fixed_cause = PyObject_CallObject(cause, NULL);
25691  if (fixed_cause == NULL)
25692  goto bad;
25693  } else if (PyExceptionInstance_Check(cause)) {
25694  fixed_cause = cause;
25695  Py_INCREF(fixed_cause);
25696  } else {
25697  PyErr_SetString(PyExc_TypeError,
25698  "exception causes must derive from "
25699  "BaseException");
25700  goto bad;
25701  }
25702  PyException_SetCause(value, fixed_cause);
25703  }
25704  PyErr_SetObject(type, value);
25705  if (tb) {
25706 #if CYTHON_COMPILING_IN_PYPY
25707  PyObject *tmp_type, *tmp_value, *tmp_tb;
25708  PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb);
25709  Py_INCREF(tb);
25710  PyErr_Restore(tmp_type, tmp_value, tb);
25711  Py_XDECREF(tmp_tb);
25712 #else
25713  PyThreadState *tstate = PyThreadState_GET();
25714  PyObject* tmp_tb = tstate->curexc_traceback;
25715  if (tb != tmp_tb) {
25716  Py_INCREF(tb);
25717  tstate->curexc_traceback = tb;
25718  Py_XDECREF(tmp_tb);
25719  }
25720 #endif
25721  }
25722 bad:
25723  Py_XDECREF(owned_instance);
25724  return;
25725 }
25726 #endif
25727 
25728 /* RaiseTooManyValuesToUnpack */
25729  static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
25730  PyErr_Format(PyExc_ValueError,
25731  "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
25732 }
25733 
25734 /* RaiseNeedMoreValuesToUnpack */
25735  static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
25736  PyErr_Format(PyExc_ValueError,
25737  "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
25738  index, (index == 1) ? "" : "s");
25739 }
25740 
25741 /* RaiseNoneIterError */
25742  static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
25743  PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
25744 }
25745 
25746 /* SaveResetException */
25747  #if CYTHON_FAST_THREAD_STATE
25748 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
25749  *type = tstate->exc_type;
25750  *value = tstate->exc_value;
25751  *tb = tstate->exc_traceback;
25752  Py_XINCREF(*type);
25753  Py_XINCREF(*value);
25754  Py_XINCREF(*tb);
25755 }
25756 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
25757  PyObject *tmp_type, *tmp_value, *tmp_tb;
25758  tmp_type = tstate->exc_type;
25759  tmp_value = tstate->exc_value;
25760  tmp_tb = tstate->exc_traceback;
25761  tstate->exc_type = type;
25762  tstate->exc_value = value;
25763  tstate->exc_traceback = tb;
25764  Py_XDECREF(tmp_type);
25765  Py_XDECREF(tmp_value);
25766  Py_XDECREF(tmp_tb);
25767 }
25768 #endif
25769 
25770 /* PyErrExceptionMatches */
25771  #if CYTHON_FAST_THREAD_STATE
25772 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
25773  PyObject *exc_type = tstate->curexc_type;
25774  if (exc_type == err) return 1;
25775  if (unlikely(!exc_type)) return 0;
25776  return PyErr_GivenExceptionMatches(exc_type, err);
25777 }
25778 #endif
25779 
25780 /* GetException */
25781  #if CYTHON_FAST_THREAD_STATE
25782 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
25783 #else
25784 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) {
25785 #endif
25786  PyObject *local_type, *local_value, *local_tb;
25787 #if CYTHON_FAST_THREAD_STATE
25788  PyObject *tmp_type, *tmp_value, *tmp_tb;
25789  local_type = tstate->curexc_type;
25790  local_value = tstate->curexc_value;
25791  local_tb = tstate->curexc_traceback;
25792  tstate->curexc_type = 0;
25793  tstate->curexc_value = 0;
25794  tstate->curexc_traceback = 0;
25795 #else
25796  PyErr_Fetch(&local_type, &local_value, &local_tb);
25797 #endif
25798  PyErr_NormalizeException(&local_type, &local_value, &local_tb);
25799 #if CYTHON_FAST_THREAD_STATE
25800  if (unlikely(tstate->curexc_type))
25801 #else
25802  if (unlikely(PyErr_Occurred()))
25803 #endif
25804  goto bad;
25805  #if PY_MAJOR_VERSION >= 3
25806  if (local_tb) {
25807  if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
25808  goto bad;
25809  }
25810  #endif
25811  Py_XINCREF(local_tb);
25812  Py_XINCREF(local_type);
25813  Py_XINCREF(local_value);
25814  *type = local_type;
25815  *value = local_value;
25816  *tb = local_tb;
25817 #if CYTHON_FAST_THREAD_STATE
25818  tmp_type = tstate->exc_type;
25819  tmp_value = tstate->exc_value;
25820  tmp_tb = tstate->exc_traceback;
25821  tstate->exc_type = local_type;
25822  tstate->exc_value = local_value;
25823  tstate->exc_traceback = local_tb;
25824  Py_XDECREF(tmp_type);
25825  Py_XDECREF(tmp_value);
25826  Py_XDECREF(tmp_tb);
25827 #else
25828  PyErr_SetExcInfo(local_type, local_value, local_tb);
25829 #endif
25830  return 0;
25831 bad:
25832  *type = 0;
25833  *value = 0;
25834  *tb = 0;
25835  Py_XDECREF(local_type);
25836  Py_XDECREF(local_value);
25837  Py_XDECREF(local_tb);
25838  return -1;
25839 }
25840 
25841 /* Import */
25842  static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
25843  PyObject *empty_list = 0;
25844  PyObject *module = 0;
25845  PyObject *global_dict = 0;
25846  PyObject *empty_dict = 0;
25847  PyObject *list;
25848  #if PY_VERSION_HEX < 0x03030000
25849  PyObject *py_import;
25850  py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
25851  if (!py_import)
25852  goto bad;
25853  #endif
25854  if (from_list)
25855  list = from_list;
25856  else {
25857  empty_list = PyList_New(0);
25858  if (!empty_list)
25859  goto bad;
25860  list = empty_list;
25861  }
25862  global_dict = PyModule_GetDict(__pyx_m);
25863  if (!global_dict)
25864  goto bad;
25865  empty_dict = PyDict_New();
25866  if (!empty_dict)
25867  goto bad;
25868  {
25869  #if PY_MAJOR_VERSION >= 3
25870  if (level == -1) {
25871  if (strchr(__Pyx_MODULE_NAME, '.')) {
25872  #if PY_VERSION_HEX < 0x03030000
25873  PyObject *py_level = PyInt_FromLong(1);
25874  if (!py_level)
25875  goto bad;
25876  module = PyObject_CallFunctionObjArgs(py_import,
25877  name, global_dict, empty_dict, list, py_level, NULL);
25878  Py_DECREF(py_level);
25879  #else
25880  module = PyImport_ImportModuleLevelObject(
25881  name, global_dict, empty_dict, list, 1);
25882  #endif
25883  if (!module) {
25884  if (!PyErr_ExceptionMatches(PyExc_ImportError))
25885  goto bad;
25886  PyErr_Clear();
25887  }
25888  }
25889  level = 0;
25890  }
25891  #endif
25892  if (!module) {
25893  #if PY_VERSION_HEX < 0x03030000
25894  PyObject *py_level = PyInt_FromLong(level);
25895  if (!py_level)
25896  goto bad;
25897  module = PyObject_CallFunctionObjArgs(py_import,
25898  name, global_dict, empty_dict, list, py_level, NULL);
25899  Py_DECREF(py_level);
25900  #else
25901  module = PyImport_ImportModuleLevelObject(
25902  name, global_dict, empty_dict, list, level);
25903  #endif
25904  }
25905  }
25906 bad:
25907  #if PY_VERSION_HEX < 0x03030000
25908  Py_XDECREF(py_import);
25909  #endif
25910  Py_XDECREF(empty_list);
25911  Py_XDECREF(empty_dict);
25912  return module;
25913 }
25914 
25915 /* CodeObjectCache */
25916  static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
25917  int start = 0, mid = 0, end = count - 1;
25918  if (end >= 0 && code_line > entries[end].code_line) {
25919  return count;
25920  }
25921  while (start < end) {
25922  mid = start + (end - start) / 2;
25923  if (code_line < entries[mid].code_line) {
25924  end = mid;
25925  } else if (code_line > entries[mid].code_line) {
25926  start = mid + 1;
25927  } else {
25928  return mid;
25929  }
25930  }
25931  if (code_line <= entries[mid].code_line) {
25932  return mid;
25933  } else {
25934  return mid + 1;
25935  }
25936 }
25937 static PyCodeObject *__pyx_find_code_object(int code_line) {
25938  PyCodeObject* code_object;
25939  int pos;
25940  if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
25941  return NULL;
25942  }
25943  pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
25944  if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
25945  return NULL;
25946  }
25947  code_object = __pyx_code_cache.entries[pos].code_object;
25948  Py_INCREF(code_object);
25949  return code_object;
25950 }
25951 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
25952  int pos, i;
25953  __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
25954  if (unlikely(!code_line)) {
25955  return;
25956  }
25957  if (unlikely(!entries)) {
25958  entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
25959  if (likely(entries)) {
25960  __pyx_code_cache.entries = entries;
25961  __pyx_code_cache.max_count = 64;
25962  __pyx_code_cache.count = 1;
25963  entries[0].code_line = code_line;
25964  entries[0].code_object = code_object;
25965  Py_INCREF(code_object);
25966  }
25967  return;
25968  }
25969  pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
25970  if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
25971  PyCodeObject* tmp = entries[pos].code_object;
25972  entries[pos].code_object = code_object;
25973  Py_DECREF(tmp);
25974  return;
25975  }
25976  if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
25977  int new_max = __pyx_code_cache.max_count + 64;
25978  entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
25979  __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry));
25980  if (unlikely(!entries)) {
25981  return;
25982  }
25983  __pyx_code_cache.entries = entries;
25984  __pyx_code_cache.max_count = new_max;
25985  }
25986  for (i=__pyx_code_cache.count; i>pos; i--) {
25987  entries[i] = entries[i-1];
25988  }
25989  entries[pos].code_line = code_line;
25990  entries[pos].code_object = code_object;
25991  __pyx_code_cache.count++;
25992  Py_INCREF(code_object);
25993 }
25994 
25995 /* AddTraceback */
25996  #include "compile.h"
25997 #include "frameobject.h"
25998 #include "traceback.h"
25999 static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
26000  const char *funcname, int c_line,
26001  int py_line, const char *filename) {
26002  PyCodeObject *py_code = 0;
26003  PyObject *py_srcfile = 0;
26004  PyObject *py_funcname = 0;
26005  #if PY_MAJOR_VERSION < 3
26006  py_srcfile = PyString_FromString(filename);
26007  #else
26008  py_srcfile = PyUnicode_FromString(filename);
26009  #endif
26010  if (!py_srcfile) goto bad;
26011  if (c_line) {
26012  #if PY_MAJOR_VERSION < 3
26013  py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
26014  #else
26015  py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
26016  #endif
26017  }
26018  else {
26019  #if PY_MAJOR_VERSION < 3
26020  py_funcname = PyString_FromString(funcname);
26021  #else
26022  py_funcname = PyUnicode_FromString(funcname);
26023  #endif
26024  }
26025  if (!py_funcname) goto bad;
26026  py_code = __Pyx_PyCode_New(
26027  0,
26028  0,
26029  0,
26030  0,
26031  0,
26032  __pyx_empty_bytes, /*PyObject *code,*/
26033  __pyx_empty_tuple, /*PyObject *consts,*/
26034  __pyx_empty_tuple, /*PyObject *names,*/
26035  __pyx_empty_tuple, /*PyObject *varnames,*/
26036  __pyx_empty_tuple, /*PyObject *freevars,*/
26037  __pyx_empty_tuple, /*PyObject *cellvars,*/
26038  py_srcfile, /*PyObject *filename,*/
26039  py_funcname, /*PyObject *name,*/
26040  py_line,
26041  __pyx_empty_bytes /*PyObject *lnotab*/
26042  );
26043  Py_DECREF(py_srcfile);
26044  Py_DECREF(py_funcname);
26045  return py_code;
26046 bad:
26047  Py_XDECREF(py_srcfile);
26048  Py_XDECREF(py_funcname);
26049  return NULL;
26050 }
26051 static void __Pyx_AddTraceback(const char *funcname, int c_line,
26052  int py_line, const char *filename) {
26053  PyCodeObject *py_code = 0;
26054  PyFrameObject *py_frame = 0;
26055  py_code = __pyx_find_code_object(c_line ? c_line : py_line);
26056  if (!py_code) {
26057  py_code = __Pyx_CreateCodeObjectForTraceback(
26058  funcname, c_line, py_line, filename);
26059  if (!py_code) goto bad;
26060  __pyx_insert_code_object(c_line ? c_line : py_line, py_code);
26061  }
26062  py_frame = PyFrame_New(
26063  PyThreadState_GET(), /*PyThreadState *tstate,*/
26064  py_code, /*PyCodeObject *code,*/
26065  __pyx_d, /*PyObject *globals,*/
26066  0 /*PyObject *locals*/
26067  );
26068  if (!py_frame) goto bad;
26069  __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
26070  PyTraceBack_Here(py_frame);
26071 bad:
26072  Py_XDECREF(py_code);
26073  Py_XDECREF(py_frame);
26074 }
26075 
26076 #if PY_MAJOR_VERSION < 3
26077 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) {
26078  if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags);
26079  if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags);
26080  PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name);
26081  return -1;
26082 }
26083 static void __Pyx_ReleaseBuffer(Py_buffer *view) {
26084  PyObject *obj = view->obj;
26085  if (!obj) return;
26086  if (PyObject_CheckBuffer(obj)) {
26087  PyBuffer_Release(view);
26088  return;
26089  }
26090  if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; }
26091  Py_DECREF(obj);
26092  view->obj = NULL;
26093 }
26094 #endif
26095 
26096 
26097  /* CIntFromPyVerify */
26098  #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
26099  __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
26100 #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
26101  __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
26102 #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
26103  {\
26104  func_type value = func_value;\
26105  if (sizeof(target_type) < sizeof(func_type)) {\
26106  if (unlikely(value != (func_type) (target_type) value)) {\
26107  func_type zero = 0;\
26108  if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
26109  return (target_type) -1;\
26110  if (is_unsigned && unlikely(value < zero))\
26111  goto raise_neg_overflow;\
26112  else\
26113  goto raise_overflow;\
26114  }\
26115  }\
26116  return (target_type) value;\
26117  }
26118 
26119 /* CIntToPy */
26120  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
26121  const int neg_one = (int) -1, const_zero = (int) 0;
26122  const int is_unsigned = neg_one > const_zero;
26123  if (is_unsigned) {
26124  if (sizeof(int) < sizeof(long)) {
26125  return PyInt_FromLong((long) value);
26126  } else if (sizeof(int) <= sizeof(unsigned long)) {
26127  return PyLong_FromUnsignedLong((unsigned long) value);
26128 #ifdef HAVE_LONG_LONG
26129  } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
26130  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
26131 #endif
26132  }
26133  } else {
26134  if (sizeof(int) <= sizeof(long)) {
26135  return PyInt_FromLong((long) value);
26136 #ifdef HAVE_LONG_LONG
26137  } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
26138  return PyLong_FromLongLong((PY_LONG_LONG) value);
26139 #endif
26140  }
26141  }
26142  {
26143  int one = 1; int little = (int)*(unsigned char *)&one;
26144  unsigned char *bytes = (unsigned char *)&value;
26145  return _PyLong_FromByteArray(bytes, sizeof(int),
26146  little, !is_unsigned);
26147  }
26148 }
26149 
26150 /* CIntToPy */
26151  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) {
26152  const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0;
26153  const int is_unsigned = neg_one > const_zero;
26154  if (is_unsigned) {
26155  if (sizeof(Py_intptr_t) < sizeof(long)) {
26156  return PyInt_FromLong((long) value);
26157  } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) {
26158  return PyLong_FromUnsignedLong((unsigned long) value);
26159 #ifdef HAVE_LONG_LONG
26160  } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) {
26161  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
26162 #endif
26163  }
26164  } else {
26165  if (sizeof(Py_intptr_t) <= sizeof(long)) {
26166  return PyInt_FromLong((long) value);
26167 #ifdef HAVE_LONG_LONG
26168  } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) {
26169  return PyLong_FromLongLong((PY_LONG_LONG) value);
26170 #endif
26171  }
26172  }
26173  {
26174  int one = 1; int little = (int)*(unsigned char *)&one;
26175  unsigned char *bytes = (unsigned char *)&value;
26176  return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t),
26177  little, !is_unsigned);
26178  }
26179 }
26180 
26181 /* CIntToPy */
26182  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
26183  const long neg_one = (long) -1, const_zero = (long) 0;
26184  const int is_unsigned = neg_one > const_zero;
26185  if (is_unsigned) {
26186  if (sizeof(long) < sizeof(long)) {
26187  return PyInt_FromLong((long) value);
26188  } else if (sizeof(long) <= sizeof(unsigned long)) {
26189  return PyLong_FromUnsignedLong((unsigned long) value);
26190 #ifdef HAVE_LONG_LONG
26191  } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
26192  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
26193 #endif
26194  }
26195  } else {
26196  if (sizeof(long) <= sizeof(long)) {
26197  return PyInt_FromLong((long) value);
26198 #ifdef HAVE_LONG_LONG
26199  } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
26200  return PyLong_FromLongLong((PY_LONG_LONG) value);
26201 #endif
26202  }
26203  }
26204  {
26205  int one = 1; int little = (int)*(unsigned char *)&one;
26206  unsigned char *bytes = (unsigned char *)&value;
26207  return _PyLong_FromByteArray(bytes, sizeof(long),
26208  little, !is_unsigned);
26209  }
26210 }
26211 
26212 /* Declarations */
26213  #if CYTHON_CCOMPLEX
26214  #ifdef __cplusplus
26215  static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
26216  return ::std::complex< float >(x, y);
26217  }
26218  #else
26219  static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
26220  return x + y*(__pyx_t_float_complex)_Complex_I;
26221  }
26222  #endif
26223 #else
26224  static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
26225  __pyx_t_float_complex z;
26226  z.real = x;
26227  z.imag = y;
26228  return z;
26229  }
26230 #endif
26231 
26232 /* Arithmetic */
26233  #if CYTHON_CCOMPLEX
26234 #else
26235  static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
26236  return (a.real == b.real) && (a.imag == b.imag);
26237  }
26238  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
26239  __pyx_t_float_complex z;
26240  z.real = a.real + b.real;
26241  z.imag = a.imag + b.imag;
26242  return z;
26243  }
26244  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
26245  __pyx_t_float_complex z;
26246  z.real = a.real - b.real;
26247  z.imag = a.imag - b.imag;
26248  return z;
26249  }
26250  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
26251  __pyx_t_float_complex z;
26252  z.real = a.real * b.real - a.imag * b.imag;
26253  z.imag = a.real * b.imag + a.imag * b.real;
26254  return z;
26255  }
26256  #if 1
26257  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
26258  if (b.imag == 0) {
26259  return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
26260  } else if (fabsf(b.real) >= fabsf(b.imag)) {
26261  if (b.real == 0 && b.imag == 0) {
26262  return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag);
26263  } else {
26264  float r = b.imag / b.real;
26265  float s = 1.0 / (b.real + b.imag * r);
26266  return __pyx_t_float_complex_from_parts(
26267  (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
26268  }
26269  } else {
26270  float r = b.real / b.imag;
26271  float s = 1.0 / (b.imag + b.real * r);
26272  return __pyx_t_float_complex_from_parts(
26273  (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
26274  }
26275  }
26276  #else
26277  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
26278  if (b.imag == 0) {
26279  return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
26280  } else {
26281  float denom = b.real * b.real + b.imag * b.imag;
26282  return __pyx_t_float_complex_from_parts(
26283  (a.real * b.real + a.imag * b.imag) / denom,
26284  (a.imag * b.real - a.real * b.imag) / denom);
26285  }
26286  }
26287  #endif
26288  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) {
26289  __pyx_t_float_complex z;
26290  z.real = -a.real;
26291  z.imag = -a.imag;
26292  return z;
26293  }
26294  static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) {
26295  return (a.real == 0) && (a.imag == 0);
26296  }
26297  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) {
26298  __pyx_t_float_complex z;
26299  z.real = a.real;
26300  z.imag = -a.imag;
26301  return z;
26302  }
26303  #if 1
26304  static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) {
26305  #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
26306  return sqrtf(z.real*z.real + z.imag*z.imag);
26307  #else
26308  return hypotf(z.real, z.imag);
26309  #endif
26310  }
26311  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
26312  __pyx_t_float_complex z;
26313  float r, lnr, theta, z_r, z_theta;
26314  if (b.imag == 0 && b.real == (int)b.real) {
26315  if (b.real < 0) {
26316  float denom = a.real * a.real + a.imag * a.imag;
26317  a.real = a.real / denom;
26318  a.imag = -a.imag / denom;
26319  b.real = -b.real;
26320  }
26321  switch ((int)b.real) {
26322  case 0:
26323  z.real = 1;
26324  z.imag = 0;
26325  return z;
26326  case 1:
26327  return a;
26328  case 2:
26329  z = __Pyx_c_prod_float(a, a);
26330  return __Pyx_c_prod_float(a, a);
26331  case 3:
26332  z = __Pyx_c_prod_float(a, a);
26333  return __Pyx_c_prod_float(z, a);
26334  case 4:
26335  z = __Pyx_c_prod_float(a, a);
26336  return __Pyx_c_prod_float(z, z);
26337  }
26338  }
26339  if (a.imag == 0) {
26340  if (a.real == 0) {
26341  return a;
26342  } else if (b.imag == 0) {
26343  z.real = powf(a.real, b.real);
26344  z.imag = 0;
26345  return z;
26346  } else if (a.real > 0) {
26347  r = a.real;
26348  theta = 0;
26349  } else {
26350  r = -a.real;
26351  theta = atan2f(0, -1);
26352  }
26353  } else {
26354  r = __Pyx_c_abs_float(a);
26355  theta = atan2f(a.imag, a.real);
26356  }
26357  lnr = logf(r);
26358  z_r = expf(lnr * b.real - theta * b.imag);
26359  z_theta = theta * b.real + lnr * b.imag;
26360  z.real = z_r * cosf(z_theta);
26361  z.imag = z_r * sinf(z_theta);
26362  return z;
26363  }
26364  #endif
26365 #endif
26366 
26367 /* Declarations */
26368  #if CYTHON_CCOMPLEX
26369  #ifdef __cplusplus
26370  static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
26371  return ::std::complex< double >(x, y);
26372  }
26373  #else
26374  static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
26375  return x + y*(__pyx_t_double_complex)_Complex_I;
26376  }
26377  #endif
26378 #else
26379  static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
26380  __pyx_t_double_complex z;
26381  z.real = x;
26382  z.imag = y;
26383  return z;
26384  }
26385 #endif
26386 
26387 /* Arithmetic */
26388  #if CYTHON_CCOMPLEX
26389 #else
26390  static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
26391  return (a.real == b.real) && (a.imag == b.imag);
26392  }
26393  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
26394  __pyx_t_double_complex z;
26395  z.real = a.real + b.real;
26396  z.imag = a.imag + b.imag;
26397  return z;
26398  }
26399  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
26400  __pyx_t_double_complex z;
26401  z.real = a.real - b.real;
26402  z.imag = a.imag - b.imag;
26403  return z;
26404  }
26405  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
26406  __pyx_t_double_complex z;
26407  z.real = a.real * b.real - a.imag * b.imag;
26408  z.imag = a.real * b.imag + a.imag * b.real;
26409  return z;
26410  }
26411  #if 1
26412  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
26413  if (b.imag == 0) {
26414  return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
26415  } else if (fabs(b.real) >= fabs(b.imag)) {
26416  if (b.real == 0 && b.imag == 0) {
26417  return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag);
26418  } else {
26419  double r = b.imag / b.real;
26420  double s = 1.0 / (b.real + b.imag * r);
26421  return __pyx_t_double_complex_from_parts(
26422  (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
26423  }
26424  } else {
26425  double r = b.real / b.imag;
26426  double s = 1.0 / (b.imag + b.real * r);
26427  return __pyx_t_double_complex_from_parts(
26428  (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
26429  }
26430  }
26431  #else
26432  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
26433  if (b.imag == 0) {
26434  return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
26435  } else {
26436  double denom = b.real * b.real + b.imag * b.imag;
26437  return __pyx_t_double_complex_from_parts(
26438  (a.real * b.real + a.imag * b.imag) / denom,
26439  (a.imag * b.real - a.real * b.imag) / denom);
26440  }
26441  }
26442  #endif
26443  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) {
26444  __pyx_t_double_complex z;
26445  z.real = -a.real;
26446  z.imag = -a.imag;
26447  return z;
26448  }
26449  static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) {
26450  return (a.real == 0) && (a.imag == 0);
26451  }
26452  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) {
26453  __pyx_t_double_complex z;
26454  z.real = a.real;
26455  z.imag = -a.imag;
26456  return z;
26457  }
26458  #if 1
26459  static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) {
26460  #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
26461  return sqrt(z.real*z.real + z.imag*z.imag);
26462  #else
26463  return hypot(z.real, z.imag);
26464  #endif
26465  }
26466  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
26467  __pyx_t_double_complex z;
26468  double r, lnr, theta, z_r, z_theta;
26469  if (b.imag == 0 && b.real == (int)b.real) {
26470  if (b.real < 0) {
26471  double denom = a.real * a.real + a.imag * a.imag;
26472  a.real = a.real / denom;
26473  a.imag = -a.imag / denom;
26474  b.real = -b.real;
26475  }
26476  switch ((int)b.real) {
26477  case 0:
26478  z.real = 1;
26479  z.imag = 0;
26480  return z;
26481  case 1:
26482  return a;
26483  case 2:
26484  z = __Pyx_c_prod_double(a, a);
26485  return __Pyx_c_prod_double(a, a);
26486  case 3:
26487  z = __Pyx_c_prod_double(a, a);
26488  return __Pyx_c_prod_double(z, a);
26489  case 4:
26490  z = __Pyx_c_prod_double(a, a);
26491  return __Pyx_c_prod_double(z, z);
26492  }
26493  }
26494  if (a.imag == 0) {
26495  if (a.real == 0) {
26496  return a;
26497  } else if (b.imag == 0) {
26498  z.real = pow(a.real, b.real);
26499  z.imag = 0;
26500  return z;
26501  } else if (a.real > 0) {
26502  r = a.real;
26503  theta = 0;
26504  } else {
26505  r = -a.real;
26506  theta = atan2(0, -1);
26507  }
26508  } else {
26509  r = __Pyx_c_abs_double(a);
26510  theta = atan2(a.imag, a.real);
26511  }
26512  lnr = log(r);
26513  z_r = exp(lnr * b.real - theta * b.imag);
26514  z_theta = theta * b.real + lnr * b.imag;
26515  z.real = z_r * cos(z_theta);
26516  z.imag = z_r * sin(z_theta);
26517  return z;
26518  }
26519  #endif
26520 #endif
26521 
26522 /* CIntToPy */
26523  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) {
26524  const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0;
26525  const int is_unsigned = neg_one > const_zero;
26526  if (is_unsigned) {
26527  if (sizeof(enum NPY_TYPES) < sizeof(long)) {
26528  return PyInt_FromLong((long) value);
26529  } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) {
26530  return PyLong_FromUnsignedLong((unsigned long) value);
26531 #ifdef HAVE_LONG_LONG
26532  } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) {
26533  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
26534 #endif
26535  }
26536  } else {
26537  if (sizeof(enum NPY_TYPES) <= sizeof(long)) {
26538  return PyInt_FromLong((long) value);
26539 #ifdef HAVE_LONG_LONG
26540  } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) {
26541  return PyLong_FromLongLong((PY_LONG_LONG) value);
26542 #endif
26543  }
26544  }
26545  {
26546  int one = 1; int little = (int)*(unsigned char *)&one;
26547  unsigned char *bytes = (unsigned char *)&value;
26548  return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES),
26549  little, !is_unsigned);
26550  }
26551 }
26552 
26553 /* CIntFromPy */
26554  static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
26555  const int neg_one = (int) -1, const_zero = (int) 0;
26556  const int is_unsigned = neg_one > const_zero;
26557 #if PY_MAJOR_VERSION < 3
26558  if (likely(PyInt_Check(x))) {
26559  if (sizeof(int) < sizeof(long)) {
26560  __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
26561  } else {
26562  long val = PyInt_AS_LONG(x);
26563  if (is_unsigned && unlikely(val < 0)) {
26564  goto raise_neg_overflow;
26565  }
26566  return (int) val;
26567  }
26568  } else
26569 #endif
26570  if (likely(PyLong_Check(x))) {
26571  if (is_unsigned) {
26572 #if CYTHON_USE_PYLONG_INTERNALS
26573  const digit* digits = ((PyLongObject*)x)->ob_digit;
26574  switch (Py_SIZE(x)) {
26575  case 0: return (int) 0;
26576  case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
26577  case 2:
26578  if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
26579  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
26580  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26581  } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
26582  return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
26583  }
26584  }
26585  break;
26586  case 3:
26587  if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
26588  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
26589  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26590  } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
26591  return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
26592  }
26593  }
26594  break;
26595  case 4:
26596  if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
26597  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
26598  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26599  } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
26600  return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
26601  }
26602  }
26603  break;
26604  }
26605 #endif
26606 #if CYTHON_COMPILING_IN_CPYTHON
26607  if (unlikely(Py_SIZE(x) < 0)) {
26608  goto raise_neg_overflow;
26609  }
26610 #else
26611  {
26612  int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
26613  if (unlikely(result < 0))
26614  return (int) -1;
26615  if (unlikely(result == 1))
26616  goto raise_neg_overflow;
26617  }
26618 #endif
26619  if (sizeof(int) <= sizeof(unsigned long)) {
26620  __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
26621 #ifdef HAVE_LONG_LONG
26622  } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
26623  __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
26624 #endif
26625  }
26626  } else {
26627 #if CYTHON_USE_PYLONG_INTERNALS
26628  const digit* digits = ((PyLongObject*)x)->ob_digit;
26629  switch (Py_SIZE(x)) {
26630  case 0: return (int) 0;
26631  case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
26632  case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0])
26633  case -2:
26634  if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
26635  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
26636  __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26637  } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
26638  return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
26639  }
26640  }
26641  break;
26642  case 2:
26643  if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
26644  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
26645  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26646  } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
26647  return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
26648  }
26649  }
26650  break;
26651  case -3:
26652  if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
26653  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
26654  __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26655  } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
26656  return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
26657  }
26658  }
26659  break;
26660  case 3:
26661  if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
26662  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
26663  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26664  } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
26665  return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
26666  }
26667  }
26668  break;
26669  case -4:
26670  if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
26671  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
26672  __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26673  } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
26674  return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
26675  }
26676  }
26677  break;
26678  case 4:
26679  if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
26680  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
26681  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26682  } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
26683  return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
26684  }
26685  }
26686  break;
26687  }
26688 #endif
26689  if (sizeof(int) <= sizeof(long)) {
26690  __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
26691 #ifdef HAVE_LONG_LONG
26692  } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
26693  __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
26694 #endif
26695  }
26696  }
26697  {
26698 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
26699  PyErr_SetString(PyExc_RuntimeError,
26700  "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
26701 #else
26702  int val;
26703  PyObject *v = __Pyx_PyNumber_IntOrLong(x);
26704  #if PY_MAJOR_VERSION < 3
26705  if (likely(v) && !PyLong_Check(v)) {
26706  PyObject *tmp = v;
26707  v = PyNumber_Long(tmp);
26708  Py_DECREF(tmp);
26709  }
26710  #endif
26711  if (likely(v)) {
26712  int one = 1; int is_little = (int)*(unsigned char *)&one;
26713  unsigned char *bytes = (unsigned char *)&val;
26714  int ret = _PyLong_AsByteArray((PyLongObject *)v,
26715  bytes, sizeof(val),
26716  is_little, !is_unsigned);
26717  Py_DECREF(v);
26718  if (likely(!ret))
26719  return val;
26720  }
26721 #endif
26722  return (int) -1;
26723  }
26724  } else {
26725  int val;
26726  PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
26727  if (!tmp) return (int) -1;
26728  val = __Pyx_PyInt_As_int(tmp);
26729  Py_DECREF(tmp);
26730  return val;
26731  }
26732 raise_overflow:
26733  PyErr_SetString(PyExc_OverflowError,
26734  "value too large to convert to int");
26735  return (int) -1;
26736 raise_neg_overflow:
26737  PyErr_SetString(PyExc_OverflowError,
26738  "can't convert negative value to int");
26739  return (int) -1;
26740 }
26741 
26742 /* CIntFromPy */
26743  static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_As_Py_intptr_t(PyObject *x) {
26744  const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0;
26745  const int is_unsigned = neg_one > const_zero;
26746 #if PY_MAJOR_VERSION < 3
26747  if (likely(PyInt_Check(x))) {
26748  if (sizeof(Py_intptr_t) < sizeof(long)) {
26749  __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, PyInt_AS_LONG(x))
26750  } else {
26751  long val = PyInt_AS_LONG(x);
26752  if (is_unsigned && unlikely(val < 0)) {
26753  goto raise_neg_overflow;
26754  }
26755  return (Py_intptr_t) val;
26756  }
26757  } else
26758 #endif
26759  if (likely(PyLong_Check(x))) {
26760  if (is_unsigned) {
26761 #if CYTHON_USE_PYLONG_INTERNALS
26762  const digit* digits = ((PyLongObject*)x)->ob_digit;
26763  switch (Py_SIZE(x)) {
26764  case 0: return (Py_intptr_t) 0;
26765  case 1: __PYX_VERIFY_RETURN_INT(Py_intptr_t, digit, digits[0])
26766  case 2:
26767  if (8 * sizeof(Py_intptr_t) > 1 * PyLong_SHIFT) {
26768  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
26769  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26770  } else if (8 * sizeof(Py_intptr_t) >= 2 * PyLong_SHIFT) {
26771  return (Py_intptr_t) (((((Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0]));
26772  }
26773  }
26774  break;
26775  case 3:
26776  if (8 * sizeof(Py_intptr_t) > 2 * PyLong_SHIFT) {
26777  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
26778  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26779  } else if (8 * sizeof(Py_intptr_t) >= 3 * PyLong_SHIFT) {
26780  return (Py_intptr_t) (((((((Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0]));
26781  }
26782  }
26783  break;
26784  case 4:
26785  if (8 * sizeof(Py_intptr_t) > 3 * PyLong_SHIFT) {
26786  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
26787  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26788  } else if (8 * sizeof(Py_intptr_t) >= 4 * PyLong_SHIFT) {
26789  return (Py_intptr_t) (((((((((Py_intptr_t)digits[3]) << PyLong_SHIFT) | (Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0]));
26790  }
26791  }
26792  break;
26793  }
26794 #endif
26795 #if CYTHON_COMPILING_IN_CPYTHON
26796  if (unlikely(Py_SIZE(x) < 0)) {
26797  goto raise_neg_overflow;
26798  }
26799 #else
26800  {
26801  int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
26802  if (unlikely(result < 0))
26803  return (Py_intptr_t) -1;
26804  if (unlikely(result == 1))
26805  goto raise_neg_overflow;
26806  }
26807 #endif
26808  if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) {
26809  __PYX_VERIFY_RETURN_INT_EXC(Py_intptr_t, unsigned long, PyLong_AsUnsignedLong(x))
26810 #ifdef HAVE_LONG_LONG
26811  } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) {
26812  __PYX_VERIFY_RETURN_INT_EXC(Py_intptr_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
26813 #endif
26814  }
26815  } else {
26816 #if CYTHON_USE_PYLONG_INTERNALS
26817  const digit* digits = ((PyLongObject*)x)->ob_digit;
26818  switch (Py_SIZE(x)) {
26819  case 0: return (Py_intptr_t) 0;
26820  case -1: __PYX_VERIFY_RETURN_INT(Py_intptr_t, sdigit, (sdigit) (-(sdigit)digits[0]))
26821  case 1: __PYX_VERIFY_RETURN_INT(Py_intptr_t, digit, +digits[0])
26822  case -2:
26823  if (8 * sizeof(Py_intptr_t) - 1 > 1 * PyLong_SHIFT) {
26824  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
26825  __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26826  } else if (8 * sizeof(Py_intptr_t) - 1 > 2 * PyLong_SHIFT) {
26827  return (Py_intptr_t) (((Py_intptr_t)-1)*(((((Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
26828  }
26829  }
26830  break;
26831  case 2:
26832  if (8 * sizeof(Py_intptr_t) > 1 * PyLong_SHIFT) {
26833  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
26834  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26835  } else if (8 * sizeof(Py_intptr_t) - 1 > 2 * PyLong_SHIFT) {
26836  return (Py_intptr_t) ((((((Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
26837  }
26838  }
26839  break;
26840  case -3:
26841  if (8 * sizeof(Py_intptr_t) - 1 > 2 * PyLong_SHIFT) {
26842  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
26843  __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26844  } else if (8 * sizeof(Py_intptr_t) - 1 > 3 * PyLong_SHIFT) {
26845  return (Py_intptr_t) (((Py_intptr_t)-1)*(((((((Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
26846  }
26847  }
26848  break;
26849  case 3:
26850  if (8 * sizeof(Py_intptr_t) > 2 * PyLong_SHIFT) {
26851  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
26852  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26853  } else if (8 * sizeof(Py_intptr_t) - 1 > 3 * PyLong_SHIFT) {
26854  return (Py_intptr_t) ((((((((Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
26855  }
26856  }
26857  break;
26858  case -4:
26859  if (8 * sizeof(Py_intptr_t) - 1 > 3 * PyLong_SHIFT) {
26860  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
26861  __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26862  } else if (8 * sizeof(Py_intptr_t) - 1 > 4 * PyLong_SHIFT) {
26863  return (Py_intptr_t) (((Py_intptr_t)-1)*(((((((((Py_intptr_t)digits[3]) << PyLong_SHIFT) | (Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
26864  }
26865  }
26866  break;
26867  case 4:
26868  if (8 * sizeof(Py_intptr_t) > 3 * PyLong_SHIFT) {
26869  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
26870  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26871  } else if (8 * sizeof(Py_intptr_t) - 1 > 4 * PyLong_SHIFT) {
26872  return (Py_intptr_t) ((((((((((Py_intptr_t)digits[3]) << PyLong_SHIFT) | (Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
26873  }
26874  }
26875  break;
26876  }
26877 #endif
26878  if (sizeof(Py_intptr_t) <= sizeof(long)) {
26879  __PYX_VERIFY_RETURN_INT_EXC(Py_intptr_t, long, PyLong_AsLong(x))
26880 #ifdef HAVE_LONG_LONG
26881  } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) {
26882  __PYX_VERIFY_RETURN_INT_EXC(Py_intptr_t, PY_LONG_LONG, PyLong_AsLongLong(x))
26883 #endif
26884  }
26885  }
26886  {
26887 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
26888  PyErr_SetString(PyExc_RuntimeError,
26889  "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
26890 #else
26891  Py_intptr_t val;
26892  PyObject *v = __Pyx_PyNumber_IntOrLong(x);
26893  #if PY_MAJOR_VERSION < 3
26894  if (likely(v) && !PyLong_Check(v)) {
26895  PyObject *tmp = v;
26896  v = PyNumber_Long(tmp);
26897  Py_DECREF(tmp);
26898  }
26899  #endif
26900  if (likely(v)) {
26901  int one = 1; int is_little = (int)*(unsigned char *)&one;
26902  unsigned char *bytes = (unsigned char *)&val;
26903  int ret = _PyLong_AsByteArray((PyLongObject *)v,
26904  bytes, sizeof(val),
26905  is_little, !is_unsigned);
26906  Py_DECREF(v);
26907  if (likely(!ret))
26908  return val;
26909  }
26910 #endif
26911  return (Py_intptr_t) -1;
26912  }
26913  } else {
26914  Py_intptr_t val;
26915  PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
26916  if (!tmp) return (Py_intptr_t) -1;
26917  val = __Pyx_PyInt_As_Py_intptr_t(tmp);
26918  Py_DECREF(tmp);
26919  return val;
26920  }
26921 raise_overflow:
26922  PyErr_SetString(PyExc_OverflowError,
26923  "value too large to convert to Py_intptr_t");
26924  return (Py_intptr_t) -1;
26925 raise_neg_overflow:
26926  PyErr_SetString(PyExc_OverflowError,
26927  "can't convert negative value to Py_intptr_t");
26928  return (Py_intptr_t) -1;
26929 }
26930 
26931 /* CIntFromPy */
26932  static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
26933  const long neg_one = (long) -1, const_zero = (long) 0;
26934  const int is_unsigned = neg_one > const_zero;
26935 #if PY_MAJOR_VERSION < 3
26936  if (likely(PyInt_Check(x))) {
26937  if (sizeof(long) < sizeof(long)) {
26938  __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
26939  } else {
26940  long val = PyInt_AS_LONG(x);
26941  if (is_unsigned && unlikely(val < 0)) {
26942  goto raise_neg_overflow;
26943  }
26944  return (long) val;
26945  }
26946  } else
26947 #endif
26948  if (likely(PyLong_Check(x))) {
26949  if (is_unsigned) {
26950 #if CYTHON_USE_PYLONG_INTERNALS
26951  const digit* digits = ((PyLongObject*)x)->ob_digit;
26952  switch (Py_SIZE(x)) {
26953  case 0: return (long) 0;
26954  case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
26955  case 2:
26956  if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
26957  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
26958  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26959  } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
26960  return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
26961  }
26962  }
26963  break;
26964  case 3:
26965  if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
26966  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
26967  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26968  } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
26969  return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
26970  }
26971  }
26972  break;
26973  case 4:
26974  if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
26975  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
26976  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
26977  } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
26978  return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
26979  }
26980  }
26981  break;
26982  }
26983 #endif
26984 #if CYTHON_COMPILING_IN_CPYTHON
26985  if (unlikely(Py_SIZE(x) < 0)) {
26986  goto raise_neg_overflow;
26987  }
26988 #else
26989  {
26990  int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
26991  if (unlikely(result < 0))
26992  return (long) -1;
26993  if (unlikely(result == 1))
26994  goto raise_neg_overflow;
26995  }
26996 #endif
26997  if (sizeof(long) <= sizeof(unsigned long)) {
26998  __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
26999 #ifdef HAVE_LONG_LONG
27000  } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
27001  __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
27002 #endif
27003  }
27004  } else {
27005 #if CYTHON_USE_PYLONG_INTERNALS
27006  const digit* digits = ((PyLongObject*)x)->ob_digit;
27007  switch (Py_SIZE(x)) {
27008  case 0: return (long) 0;
27009  case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
27010  case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0])
27011  case -2:
27012  if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
27013  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
27014  __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27015  } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
27016  return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
27017  }
27018  }
27019  break;
27020  case 2:
27021  if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
27022  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
27023  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27024  } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
27025  return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
27026  }
27027  }
27028  break;
27029  case -3:
27030  if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
27031  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
27032  __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27033  } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
27034  return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
27035  }
27036  }
27037  break;
27038  case 3:
27039  if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
27040  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
27041  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27042  } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
27043  return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
27044  }
27045  }
27046  break;
27047  case -4:
27048  if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
27049  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
27050  __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27051  } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
27052  return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
27053  }
27054  }
27055  break;
27056  case 4:
27057  if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
27058  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
27059  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27060  } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
27061  return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
27062  }
27063  }
27064  break;
27065  }
27066 #endif
27067  if (sizeof(long) <= sizeof(long)) {
27068  __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
27069 #ifdef HAVE_LONG_LONG
27070  } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
27071  __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
27072 #endif
27073  }
27074  }
27075  {
27076 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
27077  PyErr_SetString(PyExc_RuntimeError,
27078  "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
27079 #else
27080  long val;
27081  PyObject *v = __Pyx_PyNumber_IntOrLong(x);
27082  #if PY_MAJOR_VERSION < 3
27083  if (likely(v) && !PyLong_Check(v)) {
27084  PyObject *tmp = v;
27085  v = PyNumber_Long(tmp);
27086  Py_DECREF(tmp);
27087  }
27088  #endif
27089  if (likely(v)) {
27090  int one = 1; int is_little = (int)*(unsigned char *)&one;
27091  unsigned char *bytes = (unsigned char *)&val;
27092  int ret = _PyLong_AsByteArray((PyLongObject *)v,
27093  bytes, sizeof(val),
27094  is_little, !is_unsigned);
27095  Py_DECREF(v);
27096  if (likely(!ret))
27097  return val;
27098  }
27099 #endif
27100  return (long) -1;
27101  }
27102  } else {
27103  long val;
27104  PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
27105  if (!tmp) return (long) -1;
27106  val = __Pyx_PyInt_As_long(tmp);
27107  Py_DECREF(tmp);
27108  return val;
27109  }
27110 raise_overflow:
27111  PyErr_SetString(PyExc_OverflowError,
27112  "value too large to convert to long");
27113  return (long) -1;
27114 raise_neg_overflow:
27115  PyErr_SetString(PyExc_OverflowError,
27116  "can't convert negative value to long");
27117  return (long) -1;
27118 }
27119 
27120 /* CheckBinaryVersion */
27121  static int __Pyx_check_binary_version(void) {
27122  char ctversion[4], rtversion[4];
27123  PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
27124  PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
27125  if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
27126  char message[200];
27127  PyOS_snprintf(message, sizeof(message),
27128  "compiletime version %s of module '%.100s' "
27129  "does not match runtime version %s",
27130  ctversion, __Pyx_MODULE_NAME, rtversion);
27131  return PyErr_WarnEx(NULL, message, 1);
27132  }
27133  return 0;
27134 }
27135 
27136 /* ModuleImport */
27137  #ifndef __PYX_HAVE_RT_ImportModule
27138 #define __PYX_HAVE_RT_ImportModule
27139 static PyObject *__Pyx_ImportModule(const char *name) {
27140  PyObject *py_name = 0;
27141  PyObject *py_module = 0;
27142  py_name = __Pyx_PyIdentifier_FromString(name);
27143  if (!py_name)
27144  goto bad;
27145  py_module = PyImport_Import(py_name);
27146  Py_DECREF(py_name);
27147  return py_module;
27148 bad:
27149  Py_XDECREF(py_name);
27150  return 0;
27151 }
27152 #endif
27153 
27154 /* TypeImport */
27155  #ifndef __PYX_HAVE_RT_ImportType
27156 #define __PYX_HAVE_RT_ImportType
27157 static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name,
27158  size_t size, int strict)
27159 {
27160  PyObject *py_module = 0;
27161  PyObject *result = 0;
27162  PyObject *py_name = 0;
27163  char warning[200];
27164  Py_ssize_t basicsize;
27165 #ifdef Py_LIMITED_API
27166  PyObject *py_basicsize;
27167 #endif
27168  py_module = __Pyx_ImportModule(module_name);
27169  if (!py_module)
27170  goto bad;
27171  py_name = __Pyx_PyIdentifier_FromString(class_name);
27172  if (!py_name)
27173  goto bad;
27174  result = PyObject_GetAttr(py_module, py_name);
27175  Py_DECREF(py_name);
27176  py_name = 0;
27177  Py_DECREF(py_module);
27178  py_module = 0;
27179  if (!result)
27180  goto bad;
27181  if (!PyType_Check(result)) {
27182  PyErr_Format(PyExc_TypeError,
27183  "%.200s.%.200s is not a type object",
27184  module_name, class_name);
27185  goto bad;
27186  }
27187 #ifndef Py_LIMITED_API
27188  basicsize = ((PyTypeObject *)result)->tp_basicsize;
27189 #else
27190  py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
27191  if (!py_basicsize)
27192  goto bad;
27193  basicsize = PyLong_AsSsize_t(py_basicsize);
27194  Py_DECREF(py_basicsize);
27195  py_basicsize = 0;
27196  if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
27197  goto bad;
27198 #endif
27199  if (!strict && (size_t)basicsize > size) {
27200  PyOS_snprintf(warning, sizeof(warning),
27201  "%s.%s size changed, may indicate binary incompatibility. Expected %zd, got %zd",
27202  module_name, class_name, basicsize, size);
27203  if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
27204  }
27205  else if ((size_t)basicsize != size) {
27206  PyErr_Format(PyExc_ValueError,
27207  "%.200s.%.200s has the wrong size, try recompiling. Expected %zd, got %zd",
27208  module_name, class_name, basicsize, size);
27209  goto bad;
27210  }
27211  return (PyTypeObject *)result;
27212 bad:
27213  Py_XDECREF(py_module);
27214  Py_XDECREF(result);
27215  return NULL;
27216 }
27217 #endif
27218 
27219 /* InitStrings */
27220  static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
27221  while (t->p) {
27222  #if PY_MAJOR_VERSION < 3
27223  if (t->is_unicode) {
27224  *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
27225  } else if (t->intern) {
27226  *t->p = PyString_InternFromString(t->s);
27227  } else {
27228  *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
27229  }
27230  #else
27231  if (t->is_unicode | t->is_str) {
27232  if (t->intern) {
27233  *t->p = PyUnicode_InternFromString(t->s);
27234  } else if (t->encoding) {
27235  *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
27236  } else {
27237  *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
27238  }
27239  } else {
27240  *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
27241  }
27242  #endif
27243  if (!*t->p)
27244  return -1;
27245  ++t;
27246  }
27247  return 0;
27248 }
27249 
27250 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
27251  return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
27252 }
27253 static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
27254  Py_ssize_t ignore;
27255  return __Pyx_PyObject_AsStringAndSize(o, &ignore);
27256 }
27257 static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
27258 #if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT)
27259  if (
27260 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
27261  __Pyx_sys_getdefaultencoding_not_ascii &&
27262 #endif
27263  PyUnicode_Check(o)) {
27264 #if PY_VERSION_HEX < 0x03030000
27265  char* defenc_c;
27266  PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
27267  if (!defenc) return NULL;
27268  defenc_c = PyBytes_AS_STRING(defenc);
27269 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
27270  {
27271  char* end = defenc_c + PyBytes_GET_SIZE(defenc);
27272  char* c;
27273  for (c = defenc_c; c < end; c++) {
27274  if ((unsigned char) (*c) >= 128) {
27275  PyUnicode_AsASCIIString(o);
27276  return NULL;
27277  }
27278  }
27279  }
27280 #endif
27281  *length = PyBytes_GET_SIZE(defenc);
27282  return defenc_c;
27283 #else
27284  if (__Pyx_PyUnicode_READY(o) == -1) return NULL;
27285 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
27286  if (PyUnicode_IS_ASCII(o)) {
27287  *length = PyUnicode_GET_LENGTH(o);
27288  return PyUnicode_AsUTF8(o);
27289  } else {
27290  PyUnicode_AsASCIIString(o);
27291  return NULL;
27292  }
27293 #else
27294  return PyUnicode_AsUTF8AndSize(o, length);
27295 #endif
27296 #endif
27297  } else
27298 #endif
27299 #if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
27300  if (PyByteArray_Check(o)) {
27301  *length = PyByteArray_GET_SIZE(o);
27302  return PyByteArray_AS_STRING(o);
27303  } else
27304 #endif
27305  {
27306  char* result;
27307  int r = PyBytes_AsStringAndSize(o, &result, length);
27308  if (unlikely(r < 0)) {
27309  return NULL;
27310  } else {
27311  return result;
27312  }
27313  }
27314 }
27315 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
27316  int is_true = x == Py_True;
27317  if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
27318  else return PyObject_IsTrue(x);
27319 }
27320 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
27321 #if CYTHON_USE_TYPE_SLOTS
27322  PyNumberMethods *m;
27323 #endif
27324  const char *name = NULL;
27325  PyObject *res = NULL;
27326 #if PY_MAJOR_VERSION < 3
27327  if (PyInt_Check(x) || PyLong_Check(x))
27328 #else
27329  if (PyLong_Check(x))
27330 #endif
27331  return __Pyx_NewRef(x);
27332 #if CYTHON_USE_TYPE_SLOTS
27333  m = Py_TYPE(x)->tp_as_number;
27334  #if PY_MAJOR_VERSION < 3
27335  if (m && m->nb_int) {
27336  name = "int";
27337  res = PyNumber_Int(x);
27338  }
27339  else if (m && m->nb_long) {
27340  name = "long";
27341  res = PyNumber_Long(x);
27342  }
27343  #else
27344  if (m && m->nb_int) {
27345  name = "int";
27346  res = PyNumber_Long(x);
27347  }
27348  #endif
27349 #else
27350  res = PyNumber_Int(x);
27351 #endif
27352  if (res) {
27353 #if PY_MAJOR_VERSION < 3
27354  if (!PyInt_Check(res) && !PyLong_Check(res)) {
27355 #else
27356  if (!PyLong_Check(res)) {
27357 #endif
27358  PyErr_Format(PyExc_TypeError,
27359  "__%.4s__ returned non-%.4s (type %.200s)",
27360  name, name, Py_TYPE(res)->tp_name);
27361  Py_DECREF(res);
27362  return NULL;
27363  }
27364  }
27365  else if (!PyErr_Occurred()) {
27366  PyErr_SetString(PyExc_TypeError,
27367  "an integer is required");
27368  }
27369  return res;
27370 }
27371 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
27372  Py_ssize_t ival;
27373  PyObject *x;
27374 #if PY_MAJOR_VERSION < 3
27375  if (likely(PyInt_CheckExact(b))) {
27376  if (sizeof(Py_ssize_t) >= sizeof(long))
27377  return PyInt_AS_LONG(b);
27378  else
27379  return PyInt_AsSsize_t(x);
27380  }
27381 #endif
27382  if (likely(PyLong_CheckExact(b))) {
27383  #if CYTHON_USE_PYLONG_INTERNALS
27384  const digit* digits = ((PyLongObject*)b)->ob_digit;
27385  const Py_ssize_t size = Py_SIZE(b);
27386  if (likely(__Pyx_sst_abs(size) <= 1)) {
27387  ival = likely(size) ? digits[0] : 0;
27388  if (size == -1) ival = -ival;
27389  return ival;
27390  } else {
27391  switch (size) {
27392  case 2:
27393  if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
27394  return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
27395  }
27396  break;
27397  case -2:
27398  if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
27399  return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
27400  }
27401  break;
27402  case 3:
27403  if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
27404  return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
27405  }
27406  break;
27407  case -3:
27408  if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
27409  return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
27410  }
27411  break;
27412  case 4:
27413  if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
27414  return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
27415  }
27416  break;
27417  case -4:
27418  if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
27419  return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
27420  }
27421  break;
27422  }
27423  }
27424  #endif
27425  return PyLong_AsSsize_t(b);
27426  }
27427  x = PyNumber_Index(b);
27428  if (!x) return -1;
27429  ival = PyInt_AsSsize_t(x);
27430  Py_DECREF(x);
27431  return ival;
27432 }
27433 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
27434  return PyInt_FromSize_t(ival);
27435 }
27436 
27437 
27438 #endif /* Py_PYTHON_H */
f
double f(double C, double b, double a, int q, int r)
Definition: analyticalSolutions.c:2193
PyMODINIT_FUNC
#define PyMODINIT_FUNC
Definition: flcbdfWrappersModule.cpp:7215
Generated on Tue Sep 18 2018 16:12:29 for proteus by   doxygen 1.8.13